Wall clock time and date at job start Tue Mar 31 2020 20:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50696 * 119.99586 * 2 1 4 4 H 1.09003 * 109.47194 * 0.02562 * 3 2 1 5 5 C 1.53006 * 109.46971 * 240.00231 * 3 2 1 6 6 C 1.53000 * 109.47058 * 65.00531 * 5 3 2 7 7 C 1.52991 * 109.47119 * 120.00383 * 3 2 1 8 8 C 1.50703 * 109.47199 * 295.00142 * 7 3 2 9 9 O 1.21282 * 119.99854 * 359.97438 * 8 7 3 10 10 N 1.34772 * 120.00241 * 180.02562 * 8 7 3 11 11 C 1.46504 * 120.00291 * 179.97438 * 10 8 7 12 12 C 1.52996 * 110.28603 * 299.32238 * 11 10 8 13 13 C 1.54262 * 110.32210 * 61.45082 * 11 10 8 14 14 C 1.54377 * 105.05927 * 118.99940 * 13 11 10 15 15 N 1.48552 * 104.59445 * 336.14521 * 14 13 11 16 16 C 1.46902 * 110.99920 * 159.04050 * 15 14 13 17 17 C 1.50702 * 109.47027 * 69.87237 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99928 * 179.72353 * 17 16 15 20 20 C 1.37101 * 120.00327 * 180.27606 * 19 17 16 21 21 H 1.08001 * 119.99426 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00412 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00057 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47191 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46534 * 120.00189 * 24 22 20 27 27 H 1.48498 * 109.47283 * 240.00132 * 24 22 20 28 28 C 1.48563 * 104.22423 * 39.48587 * 15 14 13 29 29 H 1.07994 * 120.00306 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99646 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.00306 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46781 * 185.00054 * 5 3 2 33 33 H 1.08988 * 109.47093 * 304.99998 * 5 3 2 34 34 H 1.08999 * 109.47264 * 59.99389 * 6 5 3 35 35 H 1.08998 * 109.46980 * 179.97438 * 6 5 3 36 36 H 1.09004 * 109.47032 * 299.99867 * 6 5 3 37 37 H 1.09000 * 109.47413 * 174.99781 * 7 3 2 38 38 H 1.09003 * 109.47111 * 54.99897 * 7 3 2 39 39 H 0.97002 * 120.00200 * 359.97438 * 10 8 7 40 40 H 1.09005 * 109.47115 * 180.66932 * 12 11 10 41 41 H 1.08999 * 109.47619 * 300.67306 * 12 11 10 42 42 H 1.09008 * 109.46835 * 60.67523 * 12 11 10 43 43 H 1.09002 * 110.32250 * 0.09991 * 13 11 10 44 44 H 1.09000 * 110.32485 * 237.89760 * 13 11 10 45 45 H 1.09000 * 110.40771 * 217.36703 * 14 13 11 46 46 H 1.08995 * 110.51009 * 94.98023 * 14 13 11 47 47 H 1.09004 * 109.47131 * 309.87481 * 16 15 14 48 48 H 1.09000 * 109.47732 * 189.87592 * 16 15 14 49 49 H 0.97000 * 120.00317 * 0.28382 * 19 17 16 50 50 H 0.96996 * 120.00330 * 179.97438 * 23 22 20 51 51 H 1.09003 * 110.40906 * 79.29372 * 28 15 14 52 52 H 1.08999 * 110.41295 * 201.73473 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3862 -1.2493 6 6 2.0563 1.4309 -2.4953 7 6 2.9431 1.3862 1.2491 8 6 2.0698 1.4299 2.4765 9 8 0.8627 1.3998 2.3633 10 7 2.6302 1.5036 3.7000 11 6 1.7812 1.5467 4.8932 12 6 0.8755 2.7792 4.8556 13 6 0.9337 0.2618 4.9944 14 6 1.3597 -0.3960 6.3245 15 7 2.7239 0.1320 6.5831 16 6 3.0735 0.0134 8.0050 17 6 3.2684 -1.4394 8.3548 18 8 3.1302 -2.2922 7.5034 19 7 3.6023 -1.7908 9.6124 20 6 3.7852 -3.1120 9.9295 21 1 3.6621 -3.8713 9.1713 22 6 4.1288 -3.4743 11.2261 23 7 4.2781 -2.5505 12.1487 24 14 4.3773 -5.2746 11.6581 25 1 4.1514 -6.1092 10.4508 26 1 5.7641 -5.4791 12.1483 27 1 3.4146 -5.6667 12.7186 28 6 2.6480 1.5572 6.1706 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 3.5539 2.2879 -1.2056 33 1 3.5905 0.5107 -1.2953 34 1 1.4088 2.3065 -2.4493 35 1 2.6829 1.4891 -3.3853 36 1 1.4454 0.5292 -2.5390 37 1 3.5540 2.2879 1.2055 38 1 3.5906 0.5105 1.2950 39 1 3.5956 1.5281 3.7907 40 1 0.2588 2.8045 5.7541 41 1 1.4884 3.6794 4.8102 42 1 0.2338 2.7318 3.9757 43 1 1.1506 -0.4017 4.1573 44 1 -0.1277 0.5091 5.0172 45 1 1.3852 -1.4808 6.2210 46 1 0.6817 -0.1074 7.1276 47 1 2.2695 0.4287 8.6127 48 1 3.9958 0.5608 8.1994 49 1 3.7131 -1.1089 10.2934 50 1 4.5176 -2.8034 13.0540 51 1 2.1712 2.1532 6.9488 52 1 3.6435 1.9430 5.9514 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278421514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:34 Heat of formation + Delta-G solvation = -57.642051 kcal Electronic energy + Delta-G solvation = -29724.833323 eV Core-core repulsion = 25724.401659 eV Total energy + Delta-G solvation = -4000.431665 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.50480 -38.95215 -37.78412 -36.69547 -34.51160 -33.77417 -31.99286 -31.87361 -31.20967 -30.16175 -29.35403 -27.59628 -25.48981 -24.86129 -23.80263 -21.89883 -21.44350 -20.89979 -19.67128 -19.52955 -19.02294 -17.84475 -17.05560 -16.43132 -15.95158 -15.69275 -15.23800 -14.98220 -14.78871 -14.58931 -14.36970 -14.24240 -13.89520 -13.75256 -13.64084 -13.34143 -13.19879 -12.91693 -12.51702 -12.40183 -12.34022 -12.12096 -11.94244 -11.87404 -11.57092 -11.48203 -11.44312 -11.39448 -11.11141 -11.04164 -10.92837 -10.90532 -10.66943 -10.59516 -10.34091 -10.22197 -9.74008 -9.49987 -9.19364 -8.97560 -8.50439 -8.03215 -7.94060 -6.41438 -3.82074 2.37197 2.69884 3.14115 3.16314 3.26809 3.34144 3.90850 4.02652 4.26380 4.39915 4.52921 4.56019 4.67884 4.82208 5.00077 5.00347 5.04172 5.12767 5.18445 5.25328 5.27474 5.30448 5.39085 5.42924 5.46316 5.53746 5.59262 5.66573 5.67247 5.70270 5.70870 5.77448 5.82408 5.85249 5.87611 5.98320 6.04156 6.09259 6.16748 6.26335 6.31721 6.49231 6.61851 6.67759 6.85842 7.10784 7.18917 7.55660 7.55861 8.06944 8.29062 8.62439 9.18921 9.55108 10.07152 10.76484 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019711 B = 0.002075 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.211421 B =13489.860986 C =14142.686404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.152 4.152 3 C -0.042 4.042 4 H 0.080 0.920 5 C -0.117 4.117 6 C -0.151 4.151 7 C -0.137 4.137 8 C 0.513 3.487 9 O -0.529 6.529 10 N -0.716 5.716 11 C 0.175 3.825 12 C -0.156 4.156 13 C -0.116 4.116 14 C 0.036 3.964 15 N -0.482 5.482 16 C 0.034 3.966 17 C 0.446 3.554 18 O -0.577 6.577 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.027 3.973 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.400 0.600 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.038 0.962 47 H 0.050 0.950 48 H 0.089 0.911 49 H 0.392 0.608 50 H 0.270 0.730 51 H 0.056 0.944 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.195 14.008 -20.809 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C -0.061 4.061 4 H 0.098 0.902 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.177 4.177 8 C 0.299 3.701 9 O -0.406 6.406 10 N -0.368 5.368 11 C 0.088 3.912 12 C -0.214 4.214 13 C -0.155 4.155 14 C -0.092 4.092 15 N -0.206 5.206 16 C -0.098 4.098 17 C 0.231 3.769 18 O -0.460 6.460 19 N -0.203 5.203 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.101 4.101 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.234 0.766 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.117 0.883 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.107 0.893 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.074 0.926 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.696 13.077 -21.543 25.471 hybrid contribution 0.239 -0.040 1.577 1.596 sum -3.457 13.037 -19.966 24.095 Atomic orbital electron populations 1.23667 0.95900 1.01191 0.99236 1.22624 0.95994 0.97071 1.01267 1.20128 0.96466 0.97047 0.92424 0.90205 1.21547 0.97887 1.01937 0.94075 1.21756 0.99815 1.02120 0.97123 1.21734 0.98800 1.04254 0.92870 1.20569 0.89272 0.75805 0.84413 1.90674 1.14607 1.48699 1.86589 1.46155 1.10061 1.75366 1.05239 1.20947 0.90439 0.95660 0.84119 1.22183 0.99706 0.96123 1.03401 1.22650 0.99071 0.95557 0.98214 1.23209 0.88166 1.02454 0.95366 1.65171 1.26309 1.11487 1.17648 1.22071 1.01341 0.97553 0.88839 1.19685 0.84384 0.89309 0.83551 1.90511 1.55906 1.51472 1.48148 1.41865 1.60974 1.08867 1.08583 1.19741 1.43717 0.83728 0.95455 0.87897 1.25255 0.97409 0.99926 0.95438 1.69618 1.48392 1.33217 1.03189 0.85808 0.77798 0.82198 0.78590 1.19234 1.20767 1.20791 1.23434 0.99849 0.91482 0.95360 0.88759 0.89297 0.88108 0.91917 0.91788 0.92889 0.92979 0.92362 0.89063 0.88831 0.76555 0.91930 0.92784 0.90271 0.90625 0.90970 0.88266 0.94401 0.93193 0.89306 0.77539 0.91965 0.92559 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 13.22 29.01 0.38 -1.32 16 2 C -0.15 -1.48 6.76 -36.03 -0.24 -1.73 16 3 C -0.04 -0.35 1.82 -91.77 -0.17 -0.51 16 4 H 0.08 0.76 7.60 -51.93 -0.39 0.36 16 5 C -0.12 -0.77 5.39 -26.73 -0.14 -0.92 16 6 C -0.15 -1.00 9.73 37.16 0.36 -0.64 16 7 C -0.14 -1.08 5.16 -27.89 -0.14 -1.22 16 8 C 0.51 5.58 6.74 -10.99 -0.07 5.51 16 9 O -0.53 -7.17 11.46 5.56 0.06 -7.11 16 10 N -0.72 -7.45 5.10 -46.33 -0.24 -7.69 16 11 C 0.17 2.06 1.01 -130.44 -0.13 1.92 16 12 C -0.16 -1.66 8.16 37.16 0.30 -1.36 16 13 C -0.12 -1.64 5.48 -25.35 -0.14 -1.78 16 14 C 0.04 0.59 5.80 -2.19 -0.01 0.58 16 15 N -0.48 -7.89 5.06 -231.42 -1.17 -9.06 16 16 C 0.03 0.60 5.30 -4.97 -0.03 0.57 16 17 C 0.45 10.50 7.58 -10.98 -0.08 10.42 16 18 O -0.58 -15.61 14.42 5.55 0.08 -15.53 16 19 N -0.57 -14.33 5.29 -10.96 -0.06 -14.39 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 24 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 C 0.03 0.33 5.69 -2.18 -0.01 0.32 16 29 H 0.09 1.01 7.83 -52.49 -0.41 0.60 16 30 H 0.09 0.88 8.06 -52.48 -0.42 0.46 16 31 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.41 8.14 -51.94 -0.42 -0.01 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.42 7.38 -51.93 -0.38 0.04 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.40 3.45 8.27 -40.82 -0.34 3.12 16 40 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.97 6.31 -51.92 -0.33 0.64 16 43 H 0.08 1.20 7.31 -51.93 -0.38 0.82 16 44 H 0.07 0.98 7.71 -51.93 -0.40 0.58 16 45 H 0.10 1.97 6.91 -51.93 -0.36 1.61 16 46 H 0.04 0.60 7.82 -51.93 -0.41 0.20 16 47 H 0.05 0.81 7.88 -51.93 -0.41 0.40 16 48 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 49 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 50 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 51 H 0.06 0.63 7.70 -51.93 -0.40 0.23 16 52 H 0.08 0.89 7.75 -51.93 -0.40 0.48 16 LS Contribution 411.48 15.07 6.20 6.20 Total: -1.00 -32.18 411.48 -8.88 -41.06 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -9.09 Total: 12.35 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.37 Total: 1.89 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.74 Total: -54.98 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.14 Total: -22.63 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.18 -8.88 -41.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278421514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.578 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds