Wall clock time and date at job start Tue Mar 31 2020 20:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50696 * 119.99586 * 2 1 4 4 H 1.09003 * 109.47194 * 0.02562 * 3 2 1 5 5 C 1.53006 * 109.46971 * 240.00231 * 3 2 1 6 6 C 1.53000 * 109.47058 * 65.00531 * 5 3 2 7 7 C 1.52991 * 109.47119 * 120.00383 * 3 2 1 8 8 C 1.50703 * 109.47199 * 295.00142 * 7 3 2 9 9 O 1.21282 * 119.99854 * 359.97438 * 8 7 3 10 10 N 1.34772 * 120.00241 * 180.02562 * 8 7 3 11 11 C 1.46504 * 120.00291 * 179.97438 * 10 8 7 12 12 C 1.52996 * 110.28603 * 299.32238 * 11 10 8 13 13 C 1.54262 * 110.32210 * 61.45082 * 11 10 8 14 14 C 1.54377 * 105.05927 * 118.99940 * 13 11 10 15 15 N 1.48552 * 104.59445 * 336.14521 * 14 13 11 16 16 C 1.46902 * 110.99920 * 159.04050 * 15 14 13 17 17 C 1.50702 * 109.47027 * 69.87237 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99928 * 179.72353 * 17 16 15 20 20 C 1.37101 * 120.00327 * 180.27606 * 19 17 16 21 21 H 1.08001 * 119.99426 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00412 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00057 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47191 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46534 * 120.00189 * 24 22 20 27 27 H 1.48498 * 109.47283 * 240.00132 * 24 22 20 28 28 C 1.48563 * 104.22423 * 39.48587 * 15 14 13 29 29 H 1.07994 * 120.00306 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99646 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.00306 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46781 * 185.00054 * 5 3 2 33 33 H 1.08988 * 109.47093 * 304.99998 * 5 3 2 34 34 H 1.08999 * 109.47264 * 59.99389 * 6 5 3 35 35 H 1.08998 * 109.46980 * 179.97438 * 6 5 3 36 36 H 1.09004 * 109.47032 * 299.99867 * 6 5 3 37 37 H 1.09000 * 109.47413 * 174.99781 * 7 3 2 38 38 H 1.09003 * 109.47111 * 54.99897 * 7 3 2 39 39 H 0.97002 * 120.00200 * 359.97438 * 10 8 7 40 40 H 1.09005 * 109.47115 * 180.66932 * 12 11 10 41 41 H 1.08999 * 109.47619 * 300.67306 * 12 11 10 42 42 H 1.09008 * 109.46835 * 60.67523 * 12 11 10 43 43 H 1.09002 * 110.32250 * 0.09991 * 13 11 10 44 44 H 1.09000 * 110.32485 * 237.89760 * 13 11 10 45 45 H 1.09000 * 110.40771 * 217.36703 * 14 13 11 46 46 H 1.08995 * 110.51009 * 94.98023 * 14 13 11 47 47 H 1.09004 * 109.47131 * 309.87481 * 16 15 14 48 48 H 1.09000 * 109.47732 * 189.87592 * 16 15 14 49 49 H 0.97000 * 120.00317 * 0.28382 * 19 17 16 50 50 H 0.96996 * 120.00330 * 179.97438 * 23 22 20 51 51 H 1.09003 * 110.40906 * 79.29372 * 28 15 14 52 52 H 1.08999 * 110.41295 * 201.73473 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3862 -1.2493 6 6 2.0563 1.4309 -2.4953 7 6 2.9431 1.3862 1.2491 8 6 2.0698 1.4299 2.4765 9 8 0.8627 1.3998 2.3633 10 7 2.6302 1.5036 3.7000 11 6 1.7812 1.5467 4.8932 12 6 0.8755 2.7792 4.8556 13 6 0.9337 0.2618 4.9944 14 6 1.3597 -0.3960 6.3245 15 7 2.7239 0.1320 6.5831 16 6 3.0735 0.0134 8.0050 17 6 3.2684 -1.4394 8.3548 18 8 3.1302 -2.2922 7.5034 19 7 3.6023 -1.7908 9.6124 20 6 3.7852 -3.1120 9.9295 21 1 3.6621 -3.8713 9.1713 22 6 4.1288 -3.4743 11.2261 23 7 4.2781 -2.5505 12.1487 24 14 4.3773 -5.2746 11.6581 25 1 4.1514 -6.1092 10.4508 26 1 5.7641 -5.4791 12.1483 27 1 3.4146 -5.6667 12.7186 28 6 2.6480 1.5572 6.1706 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 3.5539 2.2879 -1.2056 33 1 3.5905 0.5107 -1.2953 34 1 1.4088 2.3065 -2.4493 35 1 2.6829 1.4891 -3.3853 36 1 1.4454 0.5292 -2.5390 37 1 3.5540 2.2879 1.2055 38 1 3.5906 0.5105 1.2950 39 1 3.5956 1.5281 3.7907 40 1 0.2588 2.8045 5.7541 41 1 1.4884 3.6794 4.8102 42 1 0.2338 2.7318 3.9757 43 1 1.1506 -0.4017 4.1573 44 1 -0.1277 0.5091 5.0172 45 1 1.3852 -1.4808 6.2210 46 1 0.6817 -0.1074 7.1276 47 1 2.2695 0.4287 8.6127 48 1 3.9958 0.5608 8.1994 49 1 3.7131 -1.1089 10.2934 50 1 4.5176 -2.8034 13.0540 51 1 2.1712 2.1532 6.9488 52 1 3.6435 1.9430 5.9514 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278421514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:33 Heat of formation + Delta-G solvation = -80.271436 kcal Electronic energy + Delta-G solvation = -29725.814607 eV Core-core repulsion = 25724.401659 eV Total energy + Delta-G solvation = -4001.412949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.47745 -40.31643 -39.22203 -37.52261 -36.03511 -35.34666 -33.32565 -32.88546 -32.56037 -31.10257 -30.29994 -28.95052 -26.91977 -25.83887 -25.14020 -22.72603 -22.52150 -21.79428 -21.03874 -20.39431 -20.31538 -19.83269 -17.97524 -17.67899 -17.39124 -16.72849 -16.43247 -16.33048 -15.99160 -15.75114 -15.57904 -15.39671 -15.35535 -14.76799 -14.59026 -14.44885 -14.14929 -14.06050 -13.82322 -13.52744 -13.36985 -13.22454 -13.02203 -12.96836 -12.90675 -12.79589 -12.64593 -12.40681 -12.20360 -12.12671 -12.10198 -12.00911 -11.91998 -11.79561 -11.64043 -11.48146 -11.32954 -10.60787 -10.32335 -10.02095 -9.99728 -9.84583 -9.38110 -8.46772 -5.95007 1.35700 1.40885 1.54837 1.57324 1.87255 2.06445 2.27804 2.33768 2.80676 3.19971 3.34147 3.47646 3.77610 3.87220 3.91445 3.98410 4.03718 4.19918 4.28955 4.39872 4.41974 4.43421 4.46714 4.48995 4.53273 4.63496 4.65839 4.68362 4.71086 4.79174 4.84041 4.88504 4.91774 5.05347 5.08998 5.10237 5.13519 5.16495 5.21283 5.31657 5.41103 5.42501 5.49080 5.69793 5.83599 5.87752 5.90723 6.07289 6.07853 6.61340 6.76613 7.13818 7.48262 7.57367 8.13892 8.70873 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019711 B = 0.002075 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.211421 B =13489.860986 C =14142.686404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 C -0.039 4.039 4 H 0.067 0.933 5 C -0.112 4.112 6 C -0.152 4.152 7 C -0.131 4.131 8 C 0.506 3.494 9 O -0.560 6.560 10 N -0.712 5.712 11 C 0.179 3.821 12 C -0.147 4.147 13 C -0.106 4.106 14 C 0.039 3.961 15 N -0.502 5.502 16 C 0.047 3.953 17 C 0.441 3.559 18 O -0.618 6.618 19 N -0.575 5.575 20 C -0.331 4.331 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.032 3.968 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.411 0.589 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.055 0.945 46 H 0.043 0.957 47 H 0.071 0.929 48 H 0.116 0.884 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.075 0.925 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 15.891 -20.785 26.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.167 4.167 3 C -0.058 4.058 4 H 0.085 0.915 5 C -0.149 4.149 6 C -0.209 4.209 7 C -0.170 4.170 8 C 0.294 3.706 9 O -0.438 6.438 10 N -0.365 5.365 11 C 0.092 3.908 12 C -0.206 4.206 13 C -0.146 4.146 14 C -0.089 4.089 15 N -0.226 5.226 16 C -0.085 4.085 17 C 0.229 3.771 18 O -0.503 6.503 19 N -0.213 5.213 20 C -0.460 4.460 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.095 4.095 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.139 0.861 38 H 0.121 0.879 39 H 0.247 0.753 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.089 0.911 48 H 0.134 0.866 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.093 0.907 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.237 14.996 -21.512 26.318 hybrid contribution -0.237 -0.633 1.525 1.668 sum -2.473 14.364 -19.987 24.737 Atomic orbital electron populations 1.23654 0.96397 1.00822 1.00763 1.22834 0.95907 0.98051 0.99929 1.20111 0.96497 0.95485 0.93708 0.91499 1.21525 0.97602 1.02971 0.92833 1.21761 0.99897 1.01480 0.97763 1.21762 0.98372 1.06098 0.90796 1.21141 0.89265 0.74951 0.85235 1.90673 1.16120 1.50001 1.87040 1.46123 1.10548 1.75045 1.04779 1.20861 0.90444 0.94685 0.84768 1.22094 0.99464 0.96064 1.02929 1.22524 0.99743 0.96392 0.95902 1.23038 0.88935 1.00074 0.96859 1.65095 1.26033 1.14674 1.16774 1.21946 1.03459 0.93003 0.90078 1.20797 0.82185 0.91786 0.82368 1.90491 1.57062 1.53624 1.49162 1.41925 1.61703 1.08162 1.09488 1.19656 1.46008 0.84673 0.95683 0.90569 1.26003 0.96487 1.03961 0.94830 1.69671 1.48126 1.34763 1.03548 0.84898 0.78335 0.77213 0.78049 1.20002 1.19505 1.19645 1.23536 1.01502 0.88878 0.95600 0.89479 0.89463 0.88013 0.90258 0.91297 0.93109 0.91914 0.93471 0.86141 0.87868 0.75276 0.91234 0.90951 0.92009 0.92910 0.90765 0.92690 0.93917 0.91092 0.86557 0.76984 0.91335 0.90658 0.87439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.92 13.22 67.77 0.90 -3.02 16 2 C -0.15 -2.92 6.76 25.64 0.17 -2.75 16 3 C -0.04 -0.60 1.82 -11.54 -0.02 -0.63 16 4 H 0.07 1.23 7.60 -2.39 -0.02 1.21 16 5 C -0.11 -1.26 5.39 30.60 0.16 -1.09 16 6 C -0.15 -1.84 9.73 71.98 0.70 -1.14 16 7 C -0.13 -1.77 5.16 29.85 0.15 -1.62 16 8 C 0.51 10.35 6.74 87.66 0.59 10.94 16 9 O -0.56 -15.06 11.46 -3.03 -0.03 -15.09 16 10 N -0.71 -13.36 5.10 -418.88 -2.13 -15.50 16 11 C 0.18 3.87 1.01 4.50 0.00 3.88 16 12 C -0.15 -2.80 8.16 71.98 0.59 -2.21 16 13 C -0.11 -3.01 5.48 31.49 0.17 -2.84 16 14 C 0.04 1.31 5.80 86.45 0.50 1.81 16 15 N -0.50 -15.71 5.06 -886.06 -4.49 -20.20 16 16 C 0.05 1.56 5.30 85.56 0.45 2.02 16 17 C 0.44 21.02 7.58 87.66 0.66 21.69 16 18 O -0.62 -34.59 14.42 -3.07 -0.04 -34.63 16 19 N -0.57 -29.50 5.29 -306.98 -1.62 -31.12 16 20 C -0.33 -18.89 9.68 84.04 0.81 -18.07 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 23 N -0.92 -49.55 13.05 21.66 0.28 -49.27 16 24 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 28 C 0.03 0.68 5.69 86.45 0.49 1.18 16 29 H 0.09 1.99 7.83 -2.91 -0.02 1.97 16 30 H 0.09 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.10 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.05 0.67 7.38 -2.38 -0.02 0.65 16 37 H 0.12 0.96 8.14 -2.39 -0.02 0.95 16 38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.41 5.91 8.27 -92.71 -0.77 5.14 16 40 H 0.07 1.22 8.12 -2.38 -0.02 1.20 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.43 6.31 -2.38 -0.02 1.42 16 43 H 0.05 1.72 7.31 -2.39 -0.02 1.71 16 44 H 0.07 2.04 7.71 -2.39 -0.02 2.02 16 45 H 0.05 2.31 6.91 -2.39 -0.02 2.30 16 46 H 0.04 1.36 7.82 -2.39 -0.02 1.34 16 47 H 0.07 2.11 7.88 -2.38 -0.02 2.10 16 48 H 0.12 3.30 8.13 -2.39 -0.02 3.28 16 49 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 50 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 51 H 0.08 1.37 7.70 -2.39 -0.02 1.35 16 52 H 0.11 1.80 7.75 -2.39 -0.02 1.78 16 Total: -1.00 -72.18 411.48 0.21 -71.97 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: -0.59 Total: 40.67 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 6.82 Total: 7.90 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -7.96 Total: -116.08 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -0.08 Total: -49.72 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -72.18 0.21 -71.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278421514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.301 kcal (2) G-P(sol) polarization free energy of solvation -72.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds