Wall clock time and date at job start Tue Mar 31 2020 20:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99795 * 2 1 4 4 H 1.09001 * 109.46777 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.46793 * 240.00077 * 3 2 1 6 6 C 1.52996 * 109.47491 * 65.00292 * 5 3 2 7 7 C 1.52997 * 109.46973 * 119.99841 * 3 2 1 8 8 C 1.50702 * 109.47002 * 184.99929 * 7 3 2 9 9 O 1.21286 * 119.99880 * 0.02562 * 8 7 3 10 10 N 1.34772 * 120.00236 * 180.02562 * 8 7 3 11 11 C 1.46497 * 120.00331 * 180.02562 * 10 8 7 12 12 C 1.52997 * 110.28984 * 59.29599 * 11 10 8 13 13 C 1.54262 * 110.32223 * 297.16600 * 11 10 8 14 14 C 1.54611 * 104.95222 * 240.97441 * 13 11 10 15 15 N 1.48558 * 104.59360 * 23.93432 * 14 13 11 16 16 C 1.46901 * 110.99916 * 200.90325 * 15 14 13 17 17 C 1.50705 * 109.46894 * 305.41602 * 16 15 14 18 18 O 1.21292 * 119.99920 * 0.02562 * 17 16 15 19 19 N 1.34771 * 119.99536 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99575 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00370 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00019 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99948 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00160 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46916 * 60.00723 * 24 22 20 26 26 H 1.48502 * 109.47490 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47468 * 300.00742 * 24 22 20 28 28 C 1.48562 * 104.22166 * 320.45756 * 15 14 13 29 29 H 1.08000 * 119.99623 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.00173 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99984 * 179.97438 * 2 1 3 32 32 H 1.09010 * 109.47012 * 185.00136 * 5 3 2 33 33 H 1.09001 * 109.47154 * 304.99313 * 5 3 2 34 34 H 1.09001 * 109.47143 * 180.02562 * 6 5 3 35 35 H 1.09000 * 109.46718 * 299.99370 * 6 5 3 36 36 H 1.08997 * 109.47271 * 59.99567 * 6 5 3 37 37 H 1.08998 * 109.46934 * 65.00293 * 7 3 2 38 38 H 1.09001 * 109.47557 * 304.99584 * 7 3 2 39 39 H 0.97002 * 119.99821 * 359.97438 * 10 8 7 40 40 H 1.09002 * 109.47153 * 60.70198 * 12 11 10 41 41 H 1.09001 * 109.46832 * 300.70389 * 12 11 10 42 42 H 1.09004 * 109.47261 * 180.70371 * 12 11 10 43 43 H 1.09002 * 110.32390 * 359.90168 * 13 11 10 44 44 H 1.09001 * 110.31995 * 122.10340 * 13 11 10 45 45 H 1.09000 * 110.46042 * 265.12940 * 14 13 11 46 46 H 1.09007 * 110.45932 * 142.73641 * 14 13 11 47 47 H 1.08995 * 109.46892 * 65.41687 * 16 15 14 48 48 H 1.09005 * 109.47276 * 185.41920 * 16 15 14 49 49 H 0.96997 * 120.00557 * 359.97438 * 19 17 16 50 50 H 0.96999 * 120.00466 * 179.97438 * 23 22 20 51 51 H 1.08996 * 110.41144 * 280.70816 * 28 15 14 52 52 H 1.09004 * 110.51021 * 158.31519 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3861 -1.2492 6 6 2.0564 1.4307 -2.4953 7 6 2.9431 1.3862 1.2492 8 6 3.6019 2.7401 1.3127 9 8 3.3885 3.5596 0.4445 10 7 4.4282 3.0402 2.3342 11 6 5.0682 4.3565 2.3963 12 6 4.0092 5.4598 2.4416 13 6 5.9994 4.5572 1.1829 14 6 7.4079 4.7544 1.7893 15 7 7.3389 4.0945 3.1185 16 6 8.3902 4.5990 4.0119 17 6 9.7331 4.4426 3.3459 18 8 9.8069 3.9589 2.2361 19 7 10.8517 4.8412 3.9832 20 6 12.0733 4.6994 3.3772 21 1 12.1391 4.2687 2.3890 22 6 13.2266 5.1108 4.0340 23 7 13.1465 5.6353 5.2362 24 14 14.8911 4.9170 3.2086 25 1 14.9069 5.6877 1.9393 26 1 15.9538 5.4275 4.1114 27 1 15.1358 3.4812 2.9189 28 6 5.9900 4.4470 3.6314 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.5540 2.2879 -1.2056 33 1 3.5906 0.5105 -1.2951 34 1 2.6831 1.4880 -3.3853 35 1 1.4456 0.5290 -2.5390 36 1 1.4089 2.3063 -2.4494 37 1 3.7084 0.6114 1.2056 38 1 2.3278 1.2396 2.1370 39 1 4.5985 2.3849 3.0288 40 1 3.3910 5.3338 3.3305 41 1 3.3827 5.3988 1.5517 42 1 4.4993 6.4329 2.4749 43 1 5.9816 3.6756 0.5421 44 1 5.7019 5.4417 0.6196 45 1 7.6287 5.8157 1.9028 46 1 8.1620 4.2746 1.1653 47 1 8.2109 5.6527 4.2251 48 1 8.3784 4.0326 4.9432 49 1 10.7925 5.2290 4.8703 50 1 13.9516 5.9221 5.6949 51 1 5.9889 5.4602 4.0331 52 1 5.6737 3.7359 4.3946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278421515.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:37 Heat of formation + Delta-G solvation = -56.205808 kcal Electronic energy + Delta-G solvation = -29702.428648 eV Core-core repulsion = 25702.059263 eV Total energy + Delta-G solvation = -4000.369385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.56919 -39.05576 -37.80945 -36.70197 -34.55744 -33.78888 -32.03476 -31.94467 -31.26816 -30.16102 -29.30424 -27.58895 -25.47946 -24.80020 -23.77512 -22.09986 -21.40820 -20.79060 -19.83807 -19.58178 -19.06229 -17.85412 -17.09492 -16.40933 -15.94661 -15.57844 -15.29686 -14.97972 -14.90125 -14.72937 -14.48891 -14.23406 -13.88118 -13.78310 -13.53827 -13.25941 -13.20852 -12.92847 -12.84096 -12.40375 -12.26944 -12.05494 -11.97547 -11.82481 -11.54781 -11.51741 -11.38715 -11.31397 -11.06378 -10.97810 -10.93243 -10.89122 -10.72531 -10.56615 -10.42367 -10.23615 -9.69194 -9.50719 -9.49762 -9.04561 -8.43653 -8.05652 -7.94292 -6.43984 -3.84903 1.98731 2.61538 3.13106 3.18546 3.24551 3.28862 3.86874 4.04325 4.26186 4.38634 4.50939 4.53006 4.78814 4.83102 4.96662 5.00506 5.03976 5.10833 5.13927 5.23220 5.26246 5.30739 5.43044 5.47437 5.50577 5.54348 5.57138 5.65875 5.73055 5.73495 5.77332 5.78832 5.85101 5.91517 5.96716 6.10312 6.15575 6.17930 6.22957 6.23825 6.34538 6.38522 6.52372 6.61535 6.66716 7.16126 7.21723 7.51419 7.53031 8.03332 8.23130 8.58973 9.15498 9.51135 10.02856 10.73546 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.002024 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.380963 B =13830.187744 C =14389.246062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.123 4.123 6 C -0.147 4.147 7 C -0.136 4.136 8 C 0.514 3.486 9 O -0.534 6.534 10 N -0.714 5.714 11 C 0.173 3.827 12 C -0.157 4.157 13 C -0.119 4.119 14 C 0.034 3.966 15 N -0.486 5.486 16 C 0.034 3.966 17 C 0.442 3.558 18 O -0.580 6.580 19 N -0.561 5.561 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C 0.027 3.973 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.401 0.599 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.036 0.964 46 H 0.116 0.884 47 H 0.049 0.951 48 H 0.090 0.910 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.056 0.944 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.773 -6.344 -3.699 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.161 4.161 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.160 4.160 6 C -0.204 4.204 7 C -0.176 4.176 8 C 0.301 3.699 9 O -0.411 6.411 10 N -0.366 5.366 11 C 0.087 3.913 12 C -0.216 4.216 13 C -0.158 4.158 14 C -0.094 4.094 15 N -0.210 5.210 16 C -0.098 4.098 17 C 0.227 3.773 18 O -0.465 6.465 19 N -0.198 5.198 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.102 4.102 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.235 0.765 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.054 0.946 46 H 0.134 0.866 47 H 0.067 0.933 48 H 0.108 0.892 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.074 0.926 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.603 -6.572 -4.960 24.998 hybrid contribution 0.901 0.673 0.907 1.445 sum -22.702 -5.898 -4.053 23.804 Atomic orbital electron populations 1.23843 0.95953 1.01712 1.01652 1.22964 0.95911 0.98147 0.99123 1.20140 0.96821 0.95504 0.93808 0.90085 1.21664 0.98021 1.03086 0.93221 1.21721 0.99750 1.01389 0.97573 1.21711 1.00248 0.95435 1.00193 1.20580 0.78689 0.89374 0.81239 1.90641 1.62326 1.50137 1.38044 1.46164 1.47188 1.16296 1.26912 1.21003 0.91897 0.82763 0.95658 1.22199 0.99003 0.97241 1.03124 1.22760 0.93899 1.02557 0.96623 1.23410 0.97312 0.97108 0.91540 1.65268 0.99805 1.53329 1.02585 1.22096 0.92089 0.98658 0.96973 1.19685 0.85046 0.84896 0.87646 1.90455 1.86331 1.49212 1.20476 1.41841 1.05329 1.54466 1.18127 1.19651 0.82292 1.38655 1.02334 0.87942 1.25268 0.99988 0.96823 0.95832 1.69601 1.30373 1.41622 1.12652 0.85912 0.80707 0.78850 0.78722 1.19907 1.20970 1.19872 1.23461 0.90322 1.00373 0.96020 0.88632 0.88666 0.87417 0.89568 0.92581 0.93053 0.93108 0.92905 0.88733 0.89046 0.76479 0.92825 0.90109 0.91868 0.90794 0.91024 0.94602 0.86634 0.93254 0.89171 0.77459 0.91796 0.92553 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.31 14.32 29.01 0.42 -0.89 16 2 C -0.14 -1.03 7.75 -36.03 -0.28 -1.31 16 3 C -0.04 -0.37 1.80 -91.78 -0.17 -0.54 16 4 H 0.08 0.79 7.60 -51.93 -0.39 0.39 16 5 C -0.12 -1.18 5.18 -26.74 -0.14 -1.32 16 6 C -0.15 -1.31 9.73 37.16 0.36 -0.95 16 7 C -0.14 -1.07 5.16 -27.88 -0.14 -1.21 16 8 C 0.51 5.51 6.69 -10.99 -0.07 5.44 16 9 O -0.53 -7.23 11.28 5.55 0.06 -7.17 16 10 N -0.71 -7.30 5.09 -46.33 -0.24 -7.53 16 11 C 0.17 2.05 1.01 -130.44 -0.13 1.92 16 12 C -0.16 -1.72 8.15 37.16 0.30 -1.42 16 13 C -0.12 -1.71 5.54 -25.22 -0.14 -1.85 16 14 C 0.03 0.58 5.32 -2.06 -0.01 0.56 16 15 N -0.49 -7.88 5.34 -231.25 -1.23 -9.11 16 16 C 0.03 0.59 5.55 -4.97 -0.03 0.56 16 17 C 0.44 10.25 7.50 -10.99 -0.08 10.17 16 18 O -0.58 -15.26 13.24 5.55 0.07 -15.19 16 19 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 24 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 C 0.03 0.33 5.69 -2.18 -0.01 0.32 16 29 H 0.10 0.54 8.06 -52.49 -0.42 0.11 16 30 H 0.10 0.64 7.83 -52.49 -0.41 0.23 16 31 H 0.11 0.70 8.06 -52.49 -0.42 0.27 16 32 H 0.09 1.04 5.88 -51.92 -0.31 0.73 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.41 7.38 -51.93 -0.38 0.03 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.40 3.32 8.27 -40.82 -0.34 2.99 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 1.01 6.17 -51.93 -0.32 0.69 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 1.15 7.41 -51.93 -0.38 0.77 16 44 H 0.07 1.00 7.71 -51.93 -0.40 0.60 16 45 H 0.04 0.62 8.00 -51.93 -0.42 0.20 16 46 H 0.12 2.39 6.04 -51.92 -0.31 2.07 16 47 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 48 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 51 H 0.06 0.65 7.54 -51.93 -0.39 0.26 16 52 H 0.08 0.86 7.76 -51.93 -0.40 0.45 16 LS Contribution 408.79 15.07 6.16 6.16 Total: -1.00 -31.16 408.79 -8.83 -39.99 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -8.93 Total: 13.08 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -0.37 Total: 1.56 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.80 Total: -54.35 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.14 Total: -22.36 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.16 -8.83 -39.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278421515.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.218 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds