Wall clock time and date at job start Tue Mar 31 2020 20:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99795 * 2 1 4 4 H 1.09001 * 109.46777 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.46793 * 240.00077 * 3 2 1 6 6 C 1.52996 * 109.47491 * 65.00292 * 5 3 2 7 7 C 1.52997 * 109.46973 * 119.99841 * 3 2 1 8 8 C 1.50702 * 109.47002 * 184.99929 * 7 3 2 9 9 O 1.21286 * 119.99880 * 0.02562 * 8 7 3 10 10 N 1.34772 * 120.00236 * 180.02562 * 8 7 3 11 11 C 1.46497 * 120.00331 * 180.02562 * 10 8 7 12 12 C 1.52997 * 110.28984 * 59.29599 * 11 10 8 13 13 C 1.54262 * 110.32223 * 297.16600 * 11 10 8 14 14 C 1.54611 * 104.95222 * 240.97441 * 13 11 10 15 15 N 1.48558 * 104.59360 * 23.93432 * 14 13 11 16 16 C 1.46901 * 110.99916 * 200.90325 * 15 14 13 17 17 C 1.50705 * 109.46894 * 305.41602 * 16 15 14 18 18 O 1.21292 * 119.99920 * 0.02562 * 17 16 15 19 19 N 1.34771 * 119.99536 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99575 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00370 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00019 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99948 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00160 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46916 * 60.00723 * 24 22 20 26 26 H 1.48502 * 109.47490 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47468 * 300.00742 * 24 22 20 28 28 C 1.48562 * 104.22166 * 320.45756 * 15 14 13 29 29 H 1.08000 * 119.99623 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.00173 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99984 * 179.97438 * 2 1 3 32 32 H 1.09010 * 109.47012 * 185.00136 * 5 3 2 33 33 H 1.09001 * 109.47154 * 304.99313 * 5 3 2 34 34 H 1.09001 * 109.47143 * 180.02562 * 6 5 3 35 35 H 1.09000 * 109.46718 * 299.99370 * 6 5 3 36 36 H 1.08997 * 109.47271 * 59.99567 * 6 5 3 37 37 H 1.08998 * 109.46934 * 65.00293 * 7 3 2 38 38 H 1.09001 * 109.47557 * 304.99584 * 7 3 2 39 39 H 0.97002 * 119.99821 * 359.97438 * 10 8 7 40 40 H 1.09002 * 109.47153 * 60.70198 * 12 11 10 41 41 H 1.09001 * 109.46832 * 300.70389 * 12 11 10 42 42 H 1.09004 * 109.47261 * 180.70371 * 12 11 10 43 43 H 1.09002 * 110.32390 * 359.90168 * 13 11 10 44 44 H 1.09001 * 110.31995 * 122.10340 * 13 11 10 45 45 H 1.09000 * 110.46042 * 265.12940 * 14 13 11 46 46 H 1.09007 * 110.45932 * 142.73641 * 14 13 11 47 47 H 1.08995 * 109.46892 * 65.41687 * 16 15 14 48 48 H 1.09005 * 109.47276 * 185.41920 * 16 15 14 49 49 H 0.96997 * 120.00557 * 359.97438 * 19 17 16 50 50 H 0.96999 * 120.00466 * 179.97438 * 23 22 20 51 51 H 1.08996 * 110.41144 * 280.70816 * 28 15 14 52 52 H 1.09004 * 110.51021 * 158.31519 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3861 -1.2492 6 6 2.0564 1.4307 -2.4953 7 6 2.9431 1.3862 1.2492 8 6 3.6019 2.7401 1.3127 9 8 3.3885 3.5596 0.4445 10 7 4.4282 3.0402 2.3342 11 6 5.0682 4.3565 2.3963 12 6 4.0092 5.4598 2.4416 13 6 5.9994 4.5572 1.1829 14 6 7.4079 4.7544 1.7893 15 7 7.3389 4.0945 3.1185 16 6 8.3902 4.5990 4.0119 17 6 9.7331 4.4426 3.3459 18 8 9.8069 3.9589 2.2361 19 7 10.8517 4.8412 3.9832 20 6 12.0733 4.6994 3.3772 21 1 12.1391 4.2687 2.3890 22 6 13.2266 5.1108 4.0340 23 7 13.1465 5.6353 5.2362 24 14 14.8911 4.9170 3.2086 25 1 14.9069 5.6877 1.9393 26 1 15.9538 5.4275 4.1114 27 1 15.1358 3.4812 2.9189 28 6 5.9900 4.4470 3.6314 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.5540 2.2879 -1.2056 33 1 3.5906 0.5105 -1.2951 34 1 2.6831 1.4880 -3.3853 35 1 1.4456 0.5290 -2.5390 36 1 1.4089 2.3063 -2.4494 37 1 3.7084 0.6114 1.2056 38 1 2.3278 1.2396 2.1370 39 1 4.5985 2.3849 3.0288 40 1 3.3910 5.3338 3.3305 41 1 3.3827 5.3988 1.5517 42 1 4.4993 6.4329 2.4749 43 1 5.9816 3.6756 0.5421 44 1 5.7019 5.4417 0.6196 45 1 7.6287 5.8157 1.9028 46 1 8.1620 4.2746 1.1653 47 1 8.2109 5.6527 4.2251 48 1 8.3784 4.0326 4.9432 49 1 10.7925 5.2290 4.8703 50 1 13.9516 5.9221 5.6949 51 1 5.9889 5.4602 4.0331 52 1 5.6737 3.7359 4.3946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278421515.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:36 Heat of formation + Delta-G solvation = -78.101597 kcal Electronic energy + Delta-G solvation = -29703.378121 eV Core-core repulsion = 25702.059263 eV Total energy + Delta-G solvation = -4001.318857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.54979 -40.43274 -39.21037 -37.53440 -36.08747 -35.33403 -33.35898 -32.88936 -32.62599 -31.10862 -30.29658 -28.94796 -26.92813 -25.81956 -25.10230 -22.85442 -22.68168 -21.64055 -21.07392 -20.48158 -20.33285 -19.81276 -17.96873 -17.63209 -17.43591 -16.74295 -16.40289 -16.31201 -15.95742 -15.78817 -15.65052 -15.53357 -15.37447 -15.01031 -14.56910 -14.32040 -14.20728 -14.00906 -13.72393 -13.50201 -13.47907 -13.25977 -13.12284 -13.04375 -12.91977 -12.72793 -12.68299 -12.43756 -12.25438 -12.14064 -12.06177 -11.98590 -11.92000 -11.80466 -11.60476 -11.48358 -11.44559 -10.47677 -10.23864 -10.14800 -10.02475 -9.90275 -9.39656 -8.47089 -5.95500 1.38783 1.40986 1.45295 1.51573 1.79208 2.04306 2.27708 2.32434 2.83421 3.19641 3.29648 3.47523 3.78644 3.81346 3.86470 4.02126 4.14228 4.20013 4.27264 4.31319 4.43137 4.44311 4.44901 4.48254 4.54148 4.61999 4.64732 4.66400 4.68853 4.77492 4.84347 4.87808 4.92767 5.00675 5.06765 5.13154 5.15078 5.23214 5.23466 5.31261 5.40681 5.44514 5.48211 5.67628 5.81351 5.83284 5.90173 5.98037 6.07741 6.60301 6.72567 7.12626 7.42942 7.55470 8.11759 8.69950 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.002024 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.380963 B =13830.187744 C =14389.246062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.148 4.148 3 C -0.040 4.040 4 H 0.065 0.935 5 C -0.122 4.122 6 C -0.144 4.144 7 C -0.129 4.129 8 C 0.510 3.490 9 O -0.566 6.566 10 N -0.709 5.709 11 C 0.178 3.822 12 C -0.150 4.150 13 C -0.110 4.110 14 C 0.039 3.961 15 N -0.499 5.499 16 C 0.045 3.955 17 C 0.438 3.562 18 O -0.616 6.616 19 N -0.572 5.572 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.032 3.968 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.413 0.587 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.029 0.971 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.116 0.884 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.072 0.928 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.202 -7.125 -2.052 26.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.166 4.166 3 C -0.058 4.058 4 H 0.084 0.916 5 C -0.160 4.160 6 C -0.201 4.201 7 C -0.169 4.169 8 C 0.298 3.702 9 O -0.445 6.445 10 N -0.361 5.361 11 C 0.091 3.909 12 C -0.208 4.208 13 C -0.149 4.149 14 C -0.089 4.089 15 N -0.224 5.224 16 C -0.086 4.086 17 C 0.225 3.775 18 O -0.503 6.503 19 N -0.209 5.209 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.096 4.096 29 H 0.128 0.872 30 H 0.111 0.889 31 H 0.137 0.863 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.249 0.751 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.134 0.866 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.090 0.910 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.053 -7.362 -3.276 26.317 hybrid contribution 1.283 0.911 0.336 1.609 sum -23.770 -6.452 -2.940 24.805 Atomic orbital electron populations 1.23981 0.95882 1.02289 1.00595 1.22914 0.96027 0.97659 1.00043 1.20051 0.96449 0.95882 0.93462 0.91622 1.21618 0.98147 1.01806 0.94394 1.21692 0.99614 1.01568 0.97252 1.21727 1.00562 0.93739 1.00856 1.21117 0.78366 0.90118 0.80620 1.90640 1.63381 1.51363 1.39158 1.46104 1.46747 1.16012 1.27256 1.20886 0.91819 0.84080 0.94074 1.22116 0.98539 0.96956 1.03185 1.22628 0.93136 1.01692 0.97479 1.23157 0.97629 0.96114 0.92026 1.65235 1.01508 1.53575 1.02037 1.22004 0.88847 1.00556 0.97183 1.20766 0.86663 0.82893 0.87148 1.90458 1.87302 1.50248 1.22244 1.41905 1.05311 1.55300 1.18395 1.19600 0.84157 1.40378 1.02099 0.90416 1.26014 1.02810 0.96028 0.96371 1.69658 1.31468 1.41568 1.13282 0.85013 0.76819 0.78715 0.77936 1.19862 1.19435 1.19754 1.23568 0.87496 1.02129 0.96418 0.87241 0.88948 0.86336 0.92388 0.92135 0.93190 0.92026 0.93575 0.87496 0.86673 0.75057 0.90885 0.91839 0.91448 0.92603 0.91102 0.95223 0.91027 0.91108 0.86559 0.76960 0.91294 0.91025 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.18 14.32 67.78 0.97 -1.21 16 2 C -0.15 -1.85 7.75 25.64 0.20 -1.65 16 3 C -0.04 -0.63 1.80 -11.54 -0.02 -0.65 16 4 H 0.07 1.26 7.60 -2.39 -0.02 1.24 16 5 C -0.12 -2.36 5.18 30.59 0.16 -2.20 16 6 C -0.14 -2.55 9.73 71.98 0.70 -1.85 16 7 C -0.13 -1.80 5.16 29.85 0.15 -1.64 16 8 C 0.51 10.43 6.69 87.66 0.59 11.02 16 9 O -0.57 -15.48 11.28 -3.05 -0.03 -15.52 16 10 N -0.71 -13.18 5.09 -418.88 -2.13 -15.31 16 11 C 0.18 3.93 1.01 4.50 0.00 3.93 16 12 C -0.15 -2.99 8.15 71.98 0.59 -2.40 16 13 C -0.11 -3.20 5.54 31.57 0.18 -3.03 16 14 C 0.04 1.35 5.32 86.53 0.46 1.81 16 15 N -0.50 -15.56 5.34 -885.54 -4.72 -20.29 16 16 C 0.05 1.52 5.55 85.56 0.47 1.99 16 17 C 0.44 20.59 7.50 87.66 0.66 21.25 16 18 O -0.62 -33.68 13.24 -3.07 -0.04 -33.72 16 19 N -0.57 -29.09 5.29 -306.98 -1.62 -30.71 16 20 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 23 N -0.92 -49.27 13.05 21.66 0.28 -48.98 16 24 Si 0.99 42.96 29.55 68.60 2.03 44.98 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 28 C 0.03 0.67 5.69 86.45 0.49 1.16 16 29 H 0.11 0.95 8.06 -2.91 -0.02 0.93 16 30 H 0.09 1.10 7.83 -2.91 -0.02 1.08 16 31 H 0.12 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.06 1.46 5.88 -2.38 -0.01 1.45 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.95 7.38 -2.39 -0.02 0.93 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.12 1.08 8.14 -2.39 -0.02 1.07 16 39 H 0.41 5.67 8.27 -92.71 -0.77 4.90 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.53 6.17 -2.39 -0.01 1.52 16 42 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.06 1.81 7.41 -2.39 -0.02 1.79 16 44 H 0.07 2.04 7.71 -2.39 -0.02 2.02 16 45 H 0.03 1.04 8.00 -2.39 -0.02 1.03 16 46 H 0.07 3.15 6.04 -2.38 -0.01 3.13 16 47 H 0.07 2.10 7.88 -2.39 -0.02 2.08 16 48 H 0.12 3.33 8.14 -2.38 -0.02 3.31 16 49 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 50 H 0.28 13.98 8.31 -92.71 -0.77 13.20 16 51 H 0.07 1.37 7.54 -2.39 -0.02 1.35 16 52 H 0.11 1.80 7.76 -2.38 -0.02 1.78 16 Total: -1.00 -70.11 408.79 0.05 -70.06 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -0.58 Total: 41.16 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 6.88 Total: 8.33 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -8.20 Total: -115.29 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -0.07 Total: -49.24 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -70.11 0.05 -70.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278421515.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.039 kcal (2) G-P(sol) polarization free energy of solvation -70.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds