Wall clock time and date at job start Tue Mar 31 2020 20:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 119.99629 * 2 1 4 4 H 1.08991 * 109.47430 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47128 * 120.00001 * 3 2 1 6 6 C 1.52999 * 109.47183 * 294.99941 * 5 3 2 7 7 C 1.53005 * 109.46766 * 239.99898 * 3 2 1 8 8 C 1.50692 * 109.47460 * 65.00304 * 7 3 2 9 9 O 1.21286 * 119.99777 * 359.97438 * 8 7 3 10 10 N 1.34779 * 120.00548 * 180.02562 * 8 7 3 11 11 C 1.46492 * 120.00110 * 179.97438 * 10 8 7 12 12 C 1.53004 * 110.37030 * 60.72692 * 11 10 8 13 13 C 1.54263 * 110.32524 * 298.54208 * 11 10 8 14 14 C 1.54383 * 105.06015 * 241.10671 * 13 11 10 15 15 N 1.48557 * 104.69816 * 23.79495 * 14 13 11 16 16 C 1.46905 * 110.99707 * 201.02181 * 15 14 13 17 17 C 1.50701 * 109.47061 * 176.47862 * 16 15 14 18 18 O 1.21297 * 120.00020 * 6.04320 * 17 16 15 19 19 N 1.34773 * 120.00161 * 186.05134 * 17 16 15 20 20 C 1.37094 * 120.00371 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00091 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00048 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00272 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99820 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46897 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47046 * 120.00322 * 24 22 20 27 27 H 1.48502 * 109.47104 * 240.00321 * 24 22 20 28 28 C 1.48677 * 104.16653 * 320.66986 * 15 14 13 29 29 H 1.08002 * 120.00162 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00075 * 179.97438 * 1 2 3 31 31 H 1.07993 * 119.99581 * 179.97438 * 2 1 3 32 32 H 1.09007 * 109.46986 * 54.99863 * 5 3 2 33 33 H 1.08998 * 109.47286 * 174.99189 * 5 3 2 34 34 H 1.08995 * 109.47145 * 59.99601 * 6 5 3 35 35 H 1.08997 * 109.47031 * 179.97438 * 6 5 3 36 36 H 1.09001 * 109.46658 * 299.99781 * 6 5 3 37 37 H 1.09000 * 109.46938 * 304.99798 * 7 3 2 38 38 H 1.09003 * 109.47139 * 185.00283 * 7 3 2 39 39 H 0.96998 * 119.99131 * 359.97438 * 10 8 7 40 40 H 1.08995 * 109.47174 * 299.26859 * 12 11 10 41 41 H 1.08996 * 109.46858 * 59.27050 * 12 11 10 42 42 H 1.08995 * 109.46959 * 179.27200 * 12 11 10 43 43 H 1.09001 * 110.31888 * 122.20880 * 13 11 10 44 44 H 1.08996 * 110.41154 * 0.04615 * 13 11 10 45 45 H 1.08992 * 110.41054 * 142.63293 * 14 13 11 46 46 H 1.09003 * 110.40815 * 264.95564 * 14 13 11 47 47 H 1.08996 * 109.46752 * 296.47113 * 16 15 14 48 48 H 1.08993 * 109.47557 * 56.47447 * 16 15 14 49 49 H 0.97003 * 119.99732 * 359.97438 * 19 17 16 50 50 H 0.96998 * 120.00600 * 179.97438 * 23 22 20 51 51 H 1.08992 * 110.30511 * 280.55118 * 28 15 14 52 52 H 1.09000 * 110.53673 * 158.21360 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3863 1.2492 6 6 2.0564 1.4308 2.4953 7 6 2.9431 1.3862 -1.2493 8 6 2.0698 1.4300 -2.4766 9 8 0.8627 1.3990 -2.3633 10 7 2.6302 1.5027 -3.7003 11 6 1.7812 1.5447 -4.8933 12 6 0.8754 2.7774 -4.8592 13 6 0.9337 0.2596 -4.9935 14 6 1.3616 -0.4006 -6.3218 15 7 2.7258 0.1266 -6.5824 16 6 3.0743 0.0053 -8.0043 17 6 4.4258 0.6270 -8.2451 18 8 5.0865 1.0237 -7.3084 19 7 4.9003 0.7425 -9.5013 20 6 6.1296 1.3085 -9.7204 21 1 6.7180 1.6616 -8.8864 22 6 6.6190 1.4270 -11.0154 23 7 5.9034 0.9971 -12.0302 24 14 8.2943 2.1977 -11.3139 25 1 8.8939 2.5969 -10.0154 26 1 9.1797 1.2127 -11.9855 27 1 8.1413 3.3956 -12.1781 28 6 2.6498 1.5529 -6.1695 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 3.5906 0.5106 1.2951 33 1 3.5540 2.2879 1.2055 34 1 1.4455 0.5291 2.5389 35 1 2.6831 1.4881 3.3853 36 1 1.4089 2.3065 2.4493 37 1 3.5906 0.5105 -1.2951 38 1 3.5540 2.2879 -1.2057 39 1 3.5956 1.5271 -3.7908 40 1 0.2324 2.7316 -3.9803 41 1 1.4884 3.6775 -4.8145 42 1 0.2601 2.8011 -5.7586 43 1 -0.1276 0.5071 -5.0183 44 1 1.1477 -0.4032 -4.1551 45 1 1.3869 -1.4851 -6.2164 46 1 0.6831 -0.1132 -7.1250 47 1 3.1043 -1.0481 -8.2824 48 1 2.3255 0.5191 -8.6071 49 1 4.3721 0.4251 -10.2503 50 1 6.2448 1.0801 -12.9343 51 1 2.1742 2.1475 -6.9494 52 1 3.6444 1.9409 -5.9500 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278421517.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:39 Heat of formation + Delta-G solvation = -79.036592 kcal Electronic energy + Delta-G solvation = -29920.281399 eV Core-core repulsion = 25918.921997 eV Total energy + Delta-G solvation = -4001.359402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.49402 -40.33497 -39.17852 -37.51968 -36.00667 -35.38671 -33.30315 -32.88084 -32.54955 -31.09341 -30.31993 -28.80934 -27.03058 -25.84436 -25.24460 -22.53723 -22.51357 -21.86454 -20.97122 -20.39379 -20.30402 -19.85230 -17.94189 -17.81853 -17.16124 -16.70802 -16.46663 -16.35894 -16.21698 -15.72163 -15.56465 -15.39589 -15.18327 -14.80864 -14.63662 -14.42474 -14.13827 -13.99337 -13.79426 -13.57437 -13.35869 -13.28423 -12.99927 -12.97837 -12.95108 -12.82497 -12.56881 -12.39185 -12.29007 -12.10891 -12.10264 -12.01186 -11.87784 -11.79400 -11.64261 -11.45859 -11.32225 -10.60534 -10.27101 -10.02558 -9.99601 -9.84139 -9.39130 -8.45943 -5.94139 1.36794 1.42403 1.56129 1.59813 1.85202 2.05453 2.28627 2.32584 2.81919 3.21208 3.32205 3.43999 3.81351 3.86549 3.90800 3.98320 4.08305 4.23415 4.30980 4.31645 4.39485 4.45073 4.46289 4.48026 4.55452 4.62072 4.66609 4.70407 4.74289 4.75794 4.79880 4.88445 4.96585 5.03318 5.06546 5.09136 5.11896 5.19901 5.21552 5.26368 5.42142 5.42287 5.48867 5.68419 5.81535 5.88862 5.91120 6.08042 6.10515 6.60913 6.72993 7.13769 7.43507 7.57195 8.12047 8.71699 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.002210 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.406233 B =12666.306131 C =13553.582626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.148 4.148 3 C -0.039 4.039 4 H 0.065 0.935 5 C -0.113 4.113 6 C -0.150 4.150 7 C -0.133 4.133 8 C 0.510 3.490 9 O -0.557 6.557 10 N -0.715 5.715 11 C 0.176 3.824 12 C -0.149 4.149 13 C -0.106 4.106 14 C 0.030 3.970 15 N -0.501 5.501 16 C 0.045 3.955 17 C 0.442 3.558 18 O -0.611 6.611 19 N -0.575 5.575 20 C -0.328 4.328 21 H 0.081 0.919 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.273 1.273 27 H -0.272 1.272 28 C 0.041 3.959 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.406 0.594 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.058 0.942 47 H 0.110 0.890 48 H 0.069 0.931 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.048 0.952 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.558 -0.473 20.295 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.166 4.166 3 C -0.057 4.057 4 H 0.083 0.917 5 C -0.151 4.151 6 C -0.208 4.208 7 C -0.173 4.173 8 C 0.298 3.702 9 O -0.435 6.435 10 N -0.367 5.367 11 C 0.089 3.911 12 C -0.207 4.207 13 C -0.145 4.145 14 C -0.097 4.097 15 N -0.225 5.225 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.497 6.497 19 N -0.212 5.212 20 C -0.457 4.457 21 H 0.099 0.901 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.198 1.198 27 H -0.198 1.198 28 C -0.088 4.088 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.241 0.759 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.076 0.924 47 H 0.128 0.872 48 H 0.087 0.913 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.066 0.934 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.525 -0.532 21.072 23.561 hybrid contribution 0.394 0.508 -1.633 1.755 sum -10.131 -0.024 19.439 21.921 Atomic orbital electron populations 1.23661 0.96255 1.00927 1.00504 1.22787 0.95921 0.97761 1.00143 1.20098 0.96399 0.95928 0.93321 0.91704 1.21532 0.97677 1.02831 0.93037 1.21749 0.99847 1.01588 0.97575 1.21772 0.98501 1.05831 0.91148 1.21070 0.89278 0.74987 0.84912 1.90650 1.15681 1.50197 1.86967 1.46239 1.10477 1.74895 1.05100 1.20915 0.90187 0.95759 0.84211 1.22104 0.99393 0.96063 1.03159 1.22523 0.99627 0.95515 0.96857 1.23275 0.88294 1.01011 0.97124 1.65175 1.25869 1.15002 1.16480 1.21970 0.93693 1.02618 0.90357 1.20644 0.89590 0.83981 0.82824 1.90456 1.61677 1.54687 1.42881 1.41945 1.17945 1.54354 1.06949 1.19682 0.95380 1.37186 0.93496 0.90113 1.26036 1.03126 0.97834 0.94475 1.69676 1.39590 1.47272 0.99725 0.84880 0.77302 0.78015 0.78210 1.19631 1.19801 1.19765 1.23335 1.00204 0.89893 0.95330 0.89760 0.88893 0.87579 0.91119 0.90839 0.93077 0.91959 0.93230 0.87679 0.87121 0.75876 0.91145 0.92696 0.91084 0.90018 0.91732 0.89160 0.92353 0.87187 0.91347 0.77124 0.91397 0.93360 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.55 13.22 67.78 0.90 -2.66 16 2 C -0.15 -2.74 6.76 25.64 0.17 -2.57 16 3 C -0.04 -0.64 1.82 -11.54 -0.02 -0.66 16 4 H 0.06 1.28 7.60 -2.39 -0.02 1.26 16 5 C -0.11 -1.42 5.39 30.59 0.16 -1.26 16 6 C -0.15 -1.90 9.73 71.98 0.70 -1.20 16 7 C -0.13 -2.16 5.16 29.85 0.15 -2.00 16 8 C 0.51 11.61 6.75 87.65 0.59 12.20 16 9 O -0.56 -15.19 11.46 -3.05 -0.03 -15.23 16 10 N -0.72 -17.07 5.10 -418.88 -2.14 -19.21 16 11 C 0.18 4.52 1.01 4.50 0.00 4.52 16 12 C -0.15 -3.55 8.17 71.98 0.59 -2.97 16 13 C -0.11 -2.60 5.48 31.49 0.17 -2.43 16 14 C 0.03 0.75 6.49 86.45 0.56 1.31 16 15 N -0.50 -15.80 5.19 -885.74 -4.59 -20.39 16 16 C 0.05 1.53 5.39 85.56 0.46 1.99 16 17 C 0.44 20.35 7.43 87.66 0.65 21.00 16 18 O -0.61 -31.98 14.02 -3.08 -0.04 -32.02 16 19 N -0.57 -28.83 5.29 -306.99 -1.62 -30.45 16 20 C -0.33 -18.21 9.68 84.04 0.81 -17.40 16 21 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 22 C -0.02 -0.80 5.50 84.93 0.47 -0.33 16 23 N -0.92 -49.24 13.05 21.66 0.28 -48.96 16 24 Si 0.99 42.34 29.55 68.60 2.03 44.37 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 C 0.04 1.26 4.79 86.43 0.41 1.67 16 29 H 0.08 1.85 7.83 -2.91 -0.02 1.82 16 30 H 0.09 1.71 8.06 -2.91 -0.02 1.69 16 31 H 0.11 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.71 7.38 -2.39 -0.02 0.69 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.41 9.46 8.27 -92.71 -0.77 8.69 16 40 H 0.07 1.82 6.32 -2.39 -0.02 1.80 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 1.53 8.12 -2.39 -0.02 1.52 16 43 H 0.08 1.87 7.71 -2.39 -0.02 1.85 16 44 H 0.06 1.73 7.32 -2.39 -0.02 1.71 16 45 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.06 1.27 7.92 -2.39 -0.02 1.25 16 47 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 48 H 0.07 2.07 7.98 -2.39 -0.02 2.05 16 49 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 50 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 51 H 0.05 1.50 7.66 -2.39 -0.02 1.48 16 52 H 0.08 2.94 6.16 -2.39 -0.01 2.93 16 Total: -1.00 -65.71 410.75 0.08 -65.63 By element: Atomic # 1 Polarization: 47.63 SS G_CDS: -0.59 Total: 47.04 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 6.79 Total: 9.22 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -8.07 Total: -119.01 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -0.08 Total: -47.25 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -65.71 0.08 -65.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278421517.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.407 kcal (2) G-P(sol) polarization free energy of solvation -65.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds