Wall clock time and date at job start Tue Mar 31 2020 19:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47189 * 2 1 4 4 H 1.08999 * 115.55089 * 29.32542 * 3 2 1 5 5 C 1.52998 * 117.51418 * 243.62845 * 3 2 1 6 6 C 1.52997 * 117.50000 * 174.99891 * 3 2 1 7 7 H 1.09003 * 117.50072 * 0.02562 * 6 3 2 8 8 C 1.50696 * 117.50282 * 214.99881 * 6 3 2 9 9 O 1.21285 * 119.99521 * 0.02562 * 8 6 3 10 10 N 1.34775 * 120.00182 * 180.02562 * 8 6 3 11 11 C 1.48140 * 127.84035 * 359.97438 * 10 8 6 12 12 C 1.54384 * 104.61897 * 140.41386 * 11 10 8 13 13 C 1.54290 * 104.96099 * 23.86648 * 12 11 10 14 14 C 1.53001 * 110.34332 * 241.02327 * 13 12 11 15 15 C 1.52993 * 110.34128 * 118.87287 * 13 12 11 16 16 N 1.46901 * 109.47323 * 61.45270 * 15 13 12 17 17 C 1.46904 * 110.99695 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.46676 * 180.02562 * 17 16 15 19 19 O 1.21288 * 120.00284 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99730 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99910 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99959 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00053 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99930 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99918 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47057 * 179.97438 * 25 23 21 27 27 H 1.48500 * 109.47389 * 300.00155 * 25 23 21 28 28 H 1.48504 * 109.47102 * 60.00503 * 25 23 21 29 29 C 1.48150 * 127.83359 * 179.97438 * 10 8 6 30 30 H 1.08990 * 109.46862 * 60.00208 * 1 2 3 31 31 H 1.09001 * 109.46553 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46819 * 300.00039 * 1 2 3 33 33 H 1.08995 * 109.47247 * 239.99846 * 2 1 3 34 34 H 1.09003 * 109.47108 * 119.99921 * 2 1 3 35 35 H 1.09005 * 117.49749 * 145.02705 * 5 3 2 36 36 H 1.08999 * 117.50273 * 0.02562 * 5 3 2 37 37 H 1.09000 * 110.40687 * 21.62755 * 11 10 8 38 38 H 1.09005 * 110.50754 * 259.24942 * 11 10 8 39 39 H 1.09003 * 110.34237 * 264.99501 * 12 11 10 40 40 H 1.08999 * 110.43390 * 142.78653 * 12 11 10 41 41 H 1.08995 * 109.47513 * 297.12758 * 14 13 12 42 42 H 1.09003 * 109.47040 * 57.12311 * 14 13 12 43 43 H 1.08997 * 109.47219 * 177.12002 * 14 13 12 44 44 H 1.08998 * 109.47256 * 301.45328 * 15 13 12 45 45 H 1.09001 * 109.47023 * 181.45844 * 15 13 12 46 46 H 1.00902 * 110.99893 * 56.05170 * 16 15 13 47 47 H 1.08996 * 109.47230 * 60.00720 * 17 16 15 48 48 H 1.09002 * 109.47146 * 299.99952 * 17 16 15 49 49 H 0.96996 * 119.99887 * 0.02562 * 20 18 17 50 50 H 0.97001 * 119.99781 * 359.97438 * 24 23 21 51 51 H 1.08997 * 110.40262 * 100.80367 * 29 10 8 52 52 H 1.08991 * 110.41146 * 338.36824 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1716 0.4816 5 6 2.8439 1.9080 -1.2157 6 6 3.5502 1.6579 0.1183 7 1 4.1804 0.7720 0.1957 8 6 4.0229 2.8617 0.8918 9 8 3.2158 3.6160 1.3925 10 7 5.3425 3.1002 1.0271 11 6 6.4698 2.3011 0.4932 12 6 7.5015 3.3487 0.0225 13 6 7.1882 4.6147 0.8469 14 6 6.8026 5.7703 -0.0788 15 6 8.3936 5.0019 1.7057 16 7 9.5384 5.3030 0.8356 17 6 10.7167 5.6803 1.6277 18 6 11.8679 5.9817 0.7030 19 8 11.7211 5.8916 -0.4976 20 7 13.0603 6.3524 1.2101 21 6 14.1077 6.6261 0.3690 22 1 13.9772 6.5451 -0.7001 23 6 15.3372 7.0078 0.8918 24 7 15.4961 7.1059 2.1926 25 14 16.7642 7.3814 -0.2543 26 1 17.9551 7.7634 0.5462 27 1 17.0771 6.1767 -1.0643 28 1 16.3945 8.5019 -1.1561 29 6 5.9946 4.2211 1.7435 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.7212 2.9433 -1.5339 36 1 3.0092 1.1867 -2.0160 37 1 6.1385 1.6900 -0.3464 38 1 6.8962 1.6724 1.2750 39 1 7.3790 3.5496 -1.0418 40 1 8.5149 3.0038 0.2280 41 1 7.6466 6.0171 -0.7228 42 1 5.9513 5.4757 -0.6925 43 1 6.5351 6.6413 0.5194 44 1 8.6485 4.1748 2.3682 45 1 8.1482 5.8816 2.3007 46 1 9.3058 6.0233 0.1684 47 1 10.9878 4.8581 2.2899 48 1 10.4871 6.5649 2.2218 49 1 13.1776 6.4248 2.1702 50 1 14.7550 6.9123 2.7877 51 1 6.3460 3.8935 2.7219 52 1 5.3048 5.0585 1.8472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278549711.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:40 Heat of formation + Delta-G solvation = -77.299565 kcal Electronic energy + Delta-G solvation = -28853.868882 eV Core-core repulsion = 24852.584804 eV Total energy + Delta-G solvation = -4001.284079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.46535 -40.36298 -39.72140 -37.87953 -36.79905 -36.11129 -33.76162 -33.07316 -32.82883 -30.63816 -28.86371 -28.33439 -26.61480 -25.43692 -24.69506 -24.02852 -23.69729 -21.51867 -21.41869 -20.29791 -19.95303 -19.83571 -18.43229 -17.96182 -17.10721 -16.98211 -16.83897 -16.68769 -15.87029 -15.64920 -15.48779 -15.45173 -15.31667 -15.14768 -14.81450 -14.52776 -14.27749 -14.09057 -13.81996 -13.47687 -13.35497 -13.31319 -13.23253 -13.09281 -13.00869 -12.90786 -12.73200 -12.28888 -12.22170 -11.94792 -11.91261 -11.88497 -11.86221 -11.67390 -11.50627 -11.49872 -11.29222 -11.04965 -10.82405 -10.38545 -10.09434 -9.79292 -9.35900 -8.91156 -6.05153 1.39891 1.53777 1.55649 1.83140 1.84018 2.02793 2.41692 2.80365 2.82797 3.18323 3.29632 3.43819 3.61959 3.68942 3.74295 3.80638 3.82947 4.10870 4.13612 4.19333 4.25046 4.26169 4.35127 4.39793 4.46230 4.49542 4.50851 4.56128 4.66046 4.67110 4.70620 4.75309 4.85522 4.88019 4.92061 4.92606 4.99318 5.07928 5.14243 5.20221 5.21782 5.28611 5.35854 5.43904 5.48049 5.60524 5.94068 6.00172 6.33842 6.49907 6.59704 6.76390 7.06455 7.46293 7.94601 8.56616 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036401 B = 0.001623 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.030437 B =17246.736322 C =17483.073911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.121 4.121 4 H 0.092 0.908 5 C -0.137 4.137 6 C -0.191 4.191 7 H 0.146 0.854 8 C 0.556 3.444 9 O -0.592 6.592 10 N -0.617 5.617 11 C 0.102 3.898 12 C -0.114 4.114 13 C -0.063 4.063 14 C -0.137 4.137 15 C 0.076 3.924 16 N -0.674 5.674 17 C 0.065 3.935 18 C 0.442 3.558 19 O -0.617 6.617 20 N -0.587 5.587 21 C -0.411 4.411 22 H 0.073 0.927 23 C -0.041 4.041 24 N -0.917 5.917 25 Si 1.133 2.867 26 H -0.273 1.273 27 H -0.273 1.273 28 H -0.273 1.273 29 C 0.115 3.885 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.131 0.869 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.088 0.912 45 H 0.039 0.961 46 H 0.343 0.657 47 H 0.108 0.892 48 H 0.064 0.936 49 H 0.384 0.616 50 H 0.259 0.741 51 H 0.086 0.914 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.308 -14.239 -1.184 29.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C -0.140 4.140 4 H 0.110 0.890 5 C -0.174 4.174 6 C -0.212 4.212 7 H 0.164 0.836 8 C 0.347 3.653 9 O -0.473 6.473 10 N -0.349 5.349 11 C -0.020 4.020 12 C -0.152 4.152 13 C -0.064 4.064 14 C -0.194 4.194 15 C -0.053 4.053 16 N -0.307 5.307 17 C -0.068 4.068 18 C 0.230 3.770 19 O -0.502 6.502 20 N -0.227 5.227 21 C -0.540 4.540 22 H 0.091 0.909 23 C -0.240 4.240 24 N -0.557 5.557 25 Si 0.953 3.047 26 H -0.198 1.198 27 H -0.198 1.198 28 H -0.199 1.199 29 C -0.008 4.008 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.149 0.851 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.107 0.893 45 H 0.057 0.943 46 H 0.163 0.837 47 H 0.126 0.874 48 H 0.082 0.918 49 H 0.219 0.781 50 H 0.070 0.930 51 H 0.104 0.896 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.141 -14.116 -1.832 28.025 hybrid contribution -1.613 0.954 1.026 2.137 sum -25.753 -13.162 -0.806 28.933 Atomic orbital electron populations 1.21749 0.95024 1.02279 1.01761 1.21157 0.96393 0.92096 1.03042 1.22492 0.90649 0.99535 1.01298 0.88982 1.23182 1.00654 1.03177 0.90413 1.22310 0.98191 0.98115 1.02537 0.83594 1.19874 0.80139 0.85984 0.79339 1.90671 1.54155 1.50949 1.51522 1.48950 1.04760 1.27734 1.53465 1.22644 0.85245 0.94118 0.99998 1.22506 0.99685 0.93429 0.99626 1.21363 0.93279 0.96289 0.95515 1.21837 1.01029 0.97358 0.99196 1.22025 0.88511 1.00841 0.93971 1.60114 1.03811 1.49393 1.17415 1.21545 0.89441 1.01518 0.94285 1.20898 0.84683 0.81809 0.89616 1.90497 1.83991 1.58017 1.17710 1.41997 1.10310 1.61578 1.08787 1.20523 0.92531 1.48571 0.92362 0.90878 1.27784 1.01917 0.94664 0.99608 1.70974 1.34512 1.47260 1.02920 0.82640 0.72007 0.77484 0.72617 1.19812 1.19800 1.19893 1.22368 0.93148 0.89877 0.95440 0.92494 0.91424 0.93421 0.89966 0.91209 0.89696 0.85086 0.88366 0.89278 0.91445 0.89384 0.92437 0.92973 0.92497 0.89334 0.94266 0.83726 0.87407 0.91773 0.78149 0.92987 0.89617 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.87 71.98 0.71 -0.72 16 2 C -0.09 -0.87 6.22 30.60 0.19 -0.68 16 3 C -0.12 -1.76 5.25 -10.79 -0.06 -1.82 16 4 H 0.09 1.83 7.60 -2.39 -0.02 1.81 16 5 C -0.14 -1.73 9.88 30.59 0.30 -1.43 16 6 C -0.19 -2.85 5.02 -11.54 -0.06 -2.91 16 7 H 0.15 1.46 7.65 -2.39 -0.02 1.44 16 8 C 0.56 12.48 7.70 87.66 0.67 13.15 16 9 O -0.59 -18.35 16.52 -3.04 -0.05 -18.40 16 10 N -0.62 -11.68 3.32 -807.98 -2.68 -14.36 16 11 C 0.10 1.40 6.82 86.53 0.59 1.99 16 12 C -0.11 -2.03 6.06 31.50 0.19 -1.84 16 13 C -0.06 -1.19 0.82 -51.27 -0.04 -1.23 16 14 C -0.14 -2.84 7.94 71.98 0.57 -2.26 16 15 C 0.08 1.52 4.40 86.30 0.38 1.90 16 16 N -0.67 -19.06 5.58 -517.92 -2.89 -21.95 16 17 C 0.06 2.04 6.17 85.56 0.53 2.57 16 18 C 0.44 20.34 7.82 87.66 0.69 21.02 16 19 O -0.62 -33.42 15.78 -3.05 -0.05 -33.47 16 20 N -0.59 -29.30 5.28 -306.98 -1.62 -30.92 16 21 C -0.41 -23.24 9.68 84.04 0.81 -22.43 16 22 H 0.07 4.44 7.16 -2.91 -0.02 4.42 16 23 C -0.04 -2.23 5.50 84.93 0.47 -1.77 16 24 N -0.92 -50.77 13.68 21.66 0.30 -50.47 16 25 Si 1.13 48.10 29.92 68.60 2.05 50.15 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 29 C 0.11 2.18 6.14 86.53 0.53 2.72 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.55 7.88 -2.39 -0.02 0.53 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.13 0.97 8.03 -2.39 -0.02 0.96 16 37 H 0.10 1.01 7.21 -2.39 -0.02 0.99 16 38 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.07 1.29 7.71 -2.39 -0.02 1.28 16 40 H 0.09 1.77 7.49 -2.39 -0.02 1.76 16 41 H 0.06 1.32 6.63 -2.39 -0.02 1.31 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 1.58 8.12 -2.39 -0.02 1.56 16 45 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.34 10.62 6.56 -89.69 -0.59 10.03 16 47 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 48 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.38 17.56 6.73 -92.71 -0.62 16.94 16 50 H 0.26 13.84 6.78 -92.71 -0.63 13.21 16 51 H 0.09 1.41 7.85 -2.39 -0.02 1.40 16 52 H 0.07 1.51 7.60 -2.39 -0.02 1.49 16 Total: -1.00 -74.58 417.25 1.38 -73.20 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -0.15 Total: 39.94 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 6.48 Total: 6.27 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -6.90 Total: -117.70 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -0.10 Total: -51.87 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.05 Total: 50.15 kcal Total: -74.58 1.38 -73.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278549711.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.099 kcal (2) G-P(sol) polarization free energy of solvation -74.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds