Wall clock time and date at job start Tue Mar 31 2020 19:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50693 * 120.00035 * 2 1 4 4 C 1.32993 * 119.99992 * 180.02562 * 2 1 3 5 5 C 1.47104 * 119.99890 * 7.41448 * 4 2 1 6 6 O 1.21613 * 120.00168 * 5.22259 * 5 4 2 7 7 N 1.34773 * 120.00269 * 185.21733 * 5 4 2 8 8 C 1.46499 * 120.00285 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47377 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.50190 * 59.91675 * 9 8 7 11 11 C 1.53121 * 109.50135 * 299.80593 * 9 8 7 12 12 C 1.53117 * 109.15999 * 182.40732 * 11 9 8 13 13 C 1.53033 * 109.28361 * 57.64684 * 12 11 9 14 14 N 1.46849 * 109.52486 * 300.82350 * 13 12 11 15 15 C 1.46893 * 111.00397 * 185.83739 * 14 13 12 16 16 C 1.50700 * 109.47672 * 169.63294 * 15 14 13 17 17 O 1.21293 * 119.99504 * 353.74383 * 16 15 14 18 18 N 1.34767 * 120.00118 * 173.73953 * 16 15 14 19 19 C 1.37107 * 119.99859 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99672 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99696 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99499 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00155 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47112 * 90.00073 * 23 21 19 25 25 H 1.48506 * 109.47010 * 210.00148 * 23 21 19 26 26 H 1.48497 * 109.47074 * 330.00075 * 23 21 19 27 27 C 1.46848 * 111.19729 * 61.73742 * 14 13 12 28 28 H 1.09001 * 109.47035 * 354.93024 * 1 2 3 29 29 H 1.09009 * 109.47245 * 234.93590 * 1 2 3 30 30 H 1.08997 * 109.47560 * 114.92917 * 1 2 3 31 31 H 1.09003 * 109.47647 * 0.02562 * 3 2 1 32 32 H 1.09010 * 109.47123 * 120.00554 * 3 2 1 33 33 H 1.08997 * 109.47815 * 239.99885 * 3 2 1 34 34 H 1.07999 * 120.00466 * 187.40985 * 4 2 1 35 35 H 0.97004 * 120.00246 * 0.02562 * 7 5 4 36 36 H 1.08997 * 109.47004 * 299.99913 * 8 7 5 37 37 H 1.08992 * 109.47245 * 60.00085 * 8 7 5 38 38 H 1.08998 * 109.47406 * 60.00426 * 10 9 8 39 39 H 1.09001 * 109.47133 * 180.02562 * 10 9 8 40 40 H 1.09002 * 109.47410 * 300.00280 * 10 9 8 41 41 H 1.08998 * 109.51817 * 302.30670 * 11 9 8 42 42 H 1.08995 * 109.52998 * 62.49415 * 11 9 8 43 43 H 1.09002 * 109.49958 * 297.70667 * 12 11 9 44 44 H 1.08996 * 109.53848 * 177.61244 * 12 11 9 45 45 H 1.08994 * 109.46661 * 180.80658 * 13 12 11 46 46 H 1.08997 * 109.46069 * 60.83612 * 13 12 11 47 47 H 1.09001 * 109.47165 * 289.63731 * 15 14 13 48 48 H 1.08999 * 109.47153 * 49.63378 * 15 14 13 49 49 H 0.97003 * 120.00515 * 0.02562 * 18 16 15 50 50 H 0.96995 * 120.00117 * 180.02562 * 22 21 19 51 51 H 1.09000 * 109.46138 * 178.24088 * 27 14 13 52 52 H 1.09001 * 109.46058 * 58.27615 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4456 -2.4203 -0.1655 6 8 0.2516 -2.4118 -0.3962 7 7 2.1034 -3.5920 -0.0611 8 6 1.3802 -4.8553 -0.2259 9 6 2.3524 -6.0250 -0.0599 10 6 2.9802 -5.9735 1.3344 11 6 3.4526 -5.9297 -1.1206 12 6 4.3864 -7.1357 -0.9859 13 6 3.5727 -8.4236 -1.1310 14 7 2.5343 -8.4676 -0.0936 15 6 1.8228 -9.7526 -0.1150 16 6 0.9501 -9.8641 1.1085 17 8 1.0079 -9.0162 1.9739 18 7 0.1054 -10.9059 1.2411 19 6 -0.6889 -11.0070 2.3540 20 1 -0.6380 -10.2517 3.1242 21 6 -1.5594 -12.0814 2.4908 22 7 -2.3211 -12.1781 3.5573 23 14 -1.6479 -13.3875 1.1583 24 1 -0.6683 -14.4636 1.4541 25 1 -3.0169 -13.9616 1.1180 26 1 -1.3289 -12.7755 -0.1566 27 6 1.5976 -7.3451 -0.2319 28 1 -0.3633 1.0237 0.0908 29 1 -0.3634 -0.5904 0.8412 30 1 -0.3634 -0.4331 -0.9319 31 1 1.5522 2.1336 0.0005 32 1 2.8872 1.3627 0.8900 33 1 2.8872 1.3629 -0.8899 34 1 3.2452 -1.1558 0.1201 35 1 3.0557 -3.5989 0.1232 36 1 0.5956 -4.9257 0.5274 37 1 0.9340 -4.8915 -1.2197 38 1 2.1964 -6.0431 2.0886 39 1 3.6730 -6.8067 1.4519 40 1 3.5188 -5.0336 1.4558 41 1 3.0023 -5.9269 -2.1132 42 1 4.0207 -5.0110 -0.9748 43 1 4.8662 -7.1168 -0.0073 44 1 5.1474 -7.0963 -1.7651 45 1 4.2323 -9.2843 -1.0213 46 1 3.1043 -8.4483 -2.1149 47 1 1.2030 -9.8099 -1.0098 48 1 2.5459 -10.5682 -0.1210 49 1 0.0594 -11.5841 0.5491 50 1 -2.9285 -12.9282 3.6531 51 1 0.8228 -7.4226 0.5308 52 1 1.1385 -7.3749 -1.2201 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278641880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:06 Heat of formation + Delta-G solvation = -57.858928 kcal Electronic energy + Delta-G solvation = -29903.683303 eV Core-core repulsion = 25903.242234 eV Total energy + Delta-G solvation = -4000.441069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.32760 -39.43192 -38.06839 -36.07900 -35.17945 -33.96492 -33.11623 -31.74366 -31.62568 -28.63160 -27.96740 -27.68731 -26.87773 -25.71674 -24.61259 -22.92268 -21.71432 -20.87935 -19.32302 -19.11531 -18.32410 -18.20618 -17.13033 -16.07166 -15.93705 -15.48575 -15.24460 -15.02768 -14.87526 -14.60351 -14.40322 -14.27779 -14.03071 -13.88972 -13.57617 -13.45202 -13.20778 -12.90434 -12.83271 -12.69563 -12.52901 -12.35731 -12.08758 -11.97131 -11.96014 -11.80502 -11.79901 -11.36857 -11.28539 -11.09049 -10.97061 -10.58548 -10.54248 -10.30359 -10.20209 -9.95377 -9.71838 -9.50407 -9.39664 -8.93148 -8.51968 -8.15163 -7.92618 -6.28873 -3.79970 1.17125 3.03767 3.07912 3.16146 3.17901 3.22827 3.77247 3.93494 4.12053 4.48923 4.56083 4.60189 4.66685 4.79608 4.89231 4.95619 5.12504 5.14301 5.17634 5.22275 5.25274 5.32843 5.40702 5.49020 5.51028 5.54903 5.60356 5.63686 5.67470 5.70904 5.76853 5.86475 5.88529 5.92382 5.95676 5.97683 6.03312 6.10701 6.22278 6.23962 6.28614 6.30520 6.42200 6.50186 6.73793 7.20045 7.33983 7.50147 7.61258 8.17174 8.22720 8.62923 8.97974 9.45196 9.86559 10.84338 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.002371 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.633189 B =11805.547764 C =13103.119467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.033 4.033 3 C -0.127 4.127 4 C -0.238 4.238 5 C 0.542 3.458 6 O -0.543 6.543 7 N -0.721 5.721 8 C 0.131 3.869 9 C -0.064 4.064 10 C -0.128 4.128 11 C -0.109 4.109 12 C -0.116 4.116 13 C 0.054 3.946 14 N -0.510 5.510 15 C 0.044 3.956 16 C 0.452 3.548 17 O -0.555 6.555 18 N -0.593 5.593 19 C -0.302 4.302 20 H 0.120 0.880 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.068 3.932 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.399 0.601 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.028 0.972 47 H 0.046 0.954 48 H 0.091 0.909 49 H 0.369 0.631 50 H 0.273 0.727 51 H 0.101 0.899 52 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.252 18.763 -12.676 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.035 4.035 3 C -0.184 4.184 4 C -0.259 4.259 5 C 0.332 3.668 6 O -0.423 6.423 7 N -0.373 5.373 8 C 0.007 3.993 9 C -0.065 4.065 10 C -0.185 4.185 11 C -0.147 4.147 12 C -0.153 4.153 13 C -0.074 4.074 14 N -0.234 5.234 15 C -0.088 4.088 16 C 0.238 3.762 17 O -0.436 6.436 18 N -0.233 5.233 19 C -0.431 4.431 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.061 4.061 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.142 0.858 35 H 0.234 0.766 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.046 0.954 47 H 0.064 0.936 48 H 0.109 0.891 49 H 0.202 0.798 50 H 0.083 0.917 51 H 0.119 0.881 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 13.497 19.240 -11.666 26.238 hybrid contribution -0.056 -1.451 -1.707 2.241 sum 13.441 17.789 -13.372 25.998 Atomic orbital electron populations 1.21090 0.90762 1.01119 1.04546 1.22571 0.96962 0.94424 0.89507 1.21031 1.00328 0.94216 1.02805 1.22330 1.00178 0.92174 1.11260 1.18544 0.87012 0.84226 0.77066 1.90785 1.14973 1.87659 1.48898 1.45923 1.12687 1.05683 1.73009 1.21352 0.94509 0.81610 1.01872 1.20762 0.95000 0.93724 0.97007 1.21729 1.01447 1.00614 0.94698 1.21655 0.96677 0.98041 0.98339 1.21598 0.97405 0.93812 1.02511 1.22119 0.94285 0.98470 0.92548 1.61416 1.13754 1.01344 1.46876 1.21884 0.97287 0.92545 0.97073 1.19655 0.83649 0.84083 0.88860 1.90547 1.69176 1.40987 1.42939 1.42235 1.37336 1.22808 1.20894 1.19416 1.15729 1.10030 0.97931 0.86274 1.25037 0.96482 0.97740 0.96987 1.69619 1.24327 1.31259 1.27022 0.86678 0.78717 0.82424 0.81590 1.19660 1.20245 1.19578 1.22117 0.94886 0.88626 1.00430 0.92923 0.90341 0.89377 0.91181 0.90649 0.90589 0.85826 0.76602 0.90932 0.91784 0.91962 0.90677 0.94364 0.92287 0.92196 0.90569 0.91840 0.90859 0.95357 0.93622 0.89123 0.79805 0.91666 0.88064 0.95707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 8.34 36.01 0.30 -0.87 16 2 C -0.03 -0.28 6.11 -101.17 -0.62 -0.90 16 3 C -0.13 -0.69 10.07 36.00 0.36 -0.33 16 4 C -0.24 -2.20 9.67 -37.81 -0.37 -2.56 16 5 C 0.54 6.66 7.69 -12.67 -0.10 6.56 16 6 O -0.54 -8.54 13.23 5.27 0.07 -8.47 16 7 N -0.72 -7.78 4.98 -61.49 -0.31 -8.09 16 8 C 0.13 1.65 4.57 -4.04 -0.02 1.63 16 9 C -0.06 -0.78 0.53 -154.43 -0.08 -0.86 16 10 C -0.13 -1.66 7.86 37.16 0.29 -1.37 16 11 C -0.11 -1.07 4.58 -26.61 -0.12 -1.20 16 12 C -0.12 -1.13 5.74 -26.65 -0.15 -1.28 16 13 C 0.05 0.62 5.46 -3.83 -0.02 0.60 16 14 N -0.51 -7.71 3.64 -236.13 -0.86 -8.57 16 15 C 0.04 0.72 5.45 -4.98 -0.03 0.69 16 16 C 0.45 10.06 7.31 -10.99 -0.08 9.98 16 17 O -0.56 -14.35 14.27 5.55 0.08 -14.27 16 18 N -0.59 -14.02 5.09 -10.96 -0.06 -14.08 16 19 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 22 N -0.88 -25.89 13.96 55.50 0.77 -25.11 16 23 Si 0.88 19.47 27.74 -169.99 -4.71 14.76 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -5.46 6.52 56.52 0.37 -5.10 16 27 C 0.07 1.03 3.84 -3.84 -0.01 1.01 16 28 H 0.05 0.40 7.71 -51.93 -0.40 0.00 16 29 H 0.08 0.90 7.52 -51.92 -0.39 0.51 16 30 H 0.09 1.01 6.99 -51.93 -0.36 0.65 16 31 H 0.07 0.33 7.71 -51.93 -0.40 -0.07 16 32 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.40 3.36 6.17 -40.82 -0.25 3.11 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.07 6.01 -51.93 -0.31 0.76 16 40 H 0.04 0.40 6.86 -51.93 -0.36 0.04 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.49 6.95 -51.93 -0.36 0.13 16 43 H 0.08 0.79 6.58 -51.93 -0.34 0.45 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.78 8.01 -51.93 -0.42 0.37 16 46 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 48 H 0.09 1.30 7.98 -51.93 -0.41 0.89 16 49 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 50 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 51 H 0.10 1.93 6.03 -51.93 -0.31 1.62 16 52 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 401.94 15.07 6.06 6.06 Total: -1.00 -33.41 401.94 -8.61 -42.01 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -8.76 Total: 12.31 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -0.89 Total: 3.44 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.45 Total: -55.85 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.15 Total: -22.74 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.41 -8.61 -42.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278641880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.844 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds