Wall clock time and date at job start Tue Mar 31 2020 19:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50693 * 120.00035 * 2 1 4 4 C 1.32993 * 119.99992 * 180.02562 * 2 1 3 5 5 C 1.47104 * 119.99890 * 7.41448 * 4 2 1 6 6 O 1.21613 * 120.00168 * 5.22259 * 5 4 2 7 7 N 1.34773 * 120.00269 * 185.21733 * 5 4 2 8 8 C 1.46499 * 120.00285 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47377 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.50190 * 59.91675 * 9 8 7 11 11 C 1.53121 * 109.50135 * 299.80593 * 9 8 7 12 12 C 1.53117 * 109.15999 * 182.40732 * 11 9 8 13 13 C 1.53033 * 109.28361 * 57.64684 * 12 11 9 14 14 N 1.46849 * 109.52486 * 300.82350 * 13 12 11 15 15 C 1.46893 * 111.00397 * 185.83739 * 14 13 12 16 16 C 1.50700 * 109.47672 * 169.63294 * 15 14 13 17 17 O 1.21293 * 119.99504 * 353.74383 * 16 15 14 18 18 N 1.34767 * 120.00118 * 173.73953 * 16 15 14 19 19 C 1.37107 * 119.99859 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99672 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99696 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99499 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00155 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47112 * 90.00073 * 23 21 19 25 25 H 1.48506 * 109.47010 * 210.00148 * 23 21 19 26 26 H 1.48497 * 109.47074 * 330.00075 * 23 21 19 27 27 C 1.46848 * 111.19729 * 61.73742 * 14 13 12 28 28 H 1.09001 * 109.47035 * 354.93024 * 1 2 3 29 29 H 1.09009 * 109.47245 * 234.93590 * 1 2 3 30 30 H 1.08997 * 109.47560 * 114.92917 * 1 2 3 31 31 H 1.09003 * 109.47647 * 0.02562 * 3 2 1 32 32 H 1.09010 * 109.47123 * 120.00554 * 3 2 1 33 33 H 1.08997 * 109.47815 * 239.99885 * 3 2 1 34 34 H 1.07999 * 120.00466 * 187.40985 * 4 2 1 35 35 H 0.97004 * 120.00246 * 0.02562 * 7 5 4 36 36 H 1.08997 * 109.47004 * 299.99913 * 8 7 5 37 37 H 1.08992 * 109.47245 * 60.00085 * 8 7 5 38 38 H 1.08998 * 109.47406 * 60.00426 * 10 9 8 39 39 H 1.09001 * 109.47133 * 180.02562 * 10 9 8 40 40 H 1.09002 * 109.47410 * 300.00280 * 10 9 8 41 41 H 1.08998 * 109.51817 * 302.30670 * 11 9 8 42 42 H 1.08995 * 109.52998 * 62.49415 * 11 9 8 43 43 H 1.09002 * 109.49958 * 297.70667 * 12 11 9 44 44 H 1.08996 * 109.53848 * 177.61244 * 12 11 9 45 45 H 1.08994 * 109.46661 * 180.80658 * 13 12 11 46 46 H 1.08997 * 109.46069 * 60.83612 * 13 12 11 47 47 H 1.09001 * 109.47165 * 289.63731 * 15 14 13 48 48 H 1.08999 * 109.47153 * 49.63378 * 15 14 13 49 49 H 0.97003 * 120.00515 * 0.02562 * 18 16 15 50 50 H 0.96995 * 120.00117 * 180.02562 * 22 21 19 51 51 H 1.09000 * 109.46138 * 178.24088 * 27 14 13 52 52 H 1.09001 * 109.46058 * 58.27615 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4456 -2.4203 -0.1655 6 8 0.2516 -2.4118 -0.3962 7 7 2.1034 -3.5920 -0.0611 8 6 1.3802 -4.8553 -0.2259 9 6 2.3524 -6.0250 -0.0599 10 6 2.9802 -5.9735 1.3344 11 6 3.4526 -5.9297 -1.1206 12 6 4.3864 -7.1357 -0.9859 13 6 3.5727 -8.4236 -1.1310 14 7 2.5343 -8.4676 -0.0936 15 6 1.8228 -9.7526 -0.1150 16 6 0.9501 -9.8641 1.1085 17 8 1.0079 -9.0162 1.9739 18 7 0.1054 -10.9059 1.2411 19 6 -0.6889 -11.0070 2.3540 20 1 -0.6380 -10.2517 3.1242 21 6 -1.5594 -12.0814 2.4908 22 7 -2.3211 -12.1781 3.5573 23 14 -1.6479 -13.3875 1.1583 24 1 -0.6683 -14.4636 1.4541 25 1 -3.0169 -13.9616 1.1180 26 1 -1.3289 -12.7755 -0.1566 27 6 1.5976 -7.3451 -0.2319 28 1 -0.3633 1.0237 0.0908 29 1 -0.3634 -0.5904 0.8412 30 1 -0.3634 -0.4331 -0.9319 31 1 1.5522 2.1336 0.0005 32 1 2.8872 1.3627 0.8900 33 1 2.8872 1.3629 -0.8899 34 1 3.2452 -1.1558 0.1201 35 1 3.0557 -3.5989 0.1232 36 1 0.5956 -4.9257 0.5274 37 1 0.9340 -4.8915 -1.2197 38 1 2.1964 -6.0431 2.0886 39 1 3.6730 -6.8067 1.4519 40 1 3.5188 -5.0336 1.4558 41 1 3.0023 -5.9269 -2.1132 42 1 4.0207 -5.0110 -0.9748 43 1 4.8662 -7.1168 -0.0073 44 1 5.1474 -7.0963 -1.7651 45 1 4.2323 -9.2843 -1.0213 46 1 3.1043 -8.4483 -2.1149 47 1 1.2030 -9.8099 -1.0098 48 1 2.5459 -10.5682 -0.1210 49 1 0.0594 -11.5841 0.5491 50 1 -2.9285 -12.9282 3.6531 51 1 0.8228 -7.4226 0.5308 52 1 1.1385 -7.3749 -1.2201 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278641880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:05 Heat of formation + Delta-G solvation = -82.546267 kcal Electronic energy + Delta-G solvation = -29904.753826 eV Core-core repulsion = 25903.242234 eV Total energy + Delta-G solvation = -4001.511593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.39027 -40.61313 -39.66556 -37.03210 -36.15814 -35.87248 -34.24809 -33.70389 -32.69995 -29.43535 -29.12534 -28.61953 -27.95091 -26.65861 -26.38197 -24.14863 -22.62995 -21.90959 -21.22442 -20.19605 -19.93091 -19.25248 -18.01601 -17.69819 -17.08042 -16.72475 -16.53188 -16.30703 -16.17274 -15.61297 -15.48223 -15.32304 -15.10548 -15.03179 -14.88834 -14.57555 -14.41436 -14.35193 -13.95279 -13.85580 -13.46482 -13.38548 -13.26408 -13.22684 -13.08621 -12.85887 -12.66605 -12.46530 -12.40954 -12.39725 -12.27523 -11.99735 -11.97183 -11.49999 -11.46463 -11.25649 -11.19637 -10.69006 -10.31268 -10.27310 -10.21429 -9.79971 -9.13806 -8.40924 -6.01028 0.41391 1.28657 1.34464 1.42943 1.98926 2.22362 2.23565 2.32482 2.67825 3.14975 3.22420 3.65485 3.73374 3.83257 3.87170 3.93733 4.14759 4.24003 4.26129 4.28905 4.30226 4.41354 4.49521 4.52813 4.58506 4.64983 4.70197 4.72336 4.77866 4.82503 4.86085 4.89256 4.90461 5.00477 5.07029 5.08068 5.13992 5.17095 5.19332 5.33372 5.39596 5.46318 5.54023 5.54302 5.63954 5.66469 5.92342 6.05792 6.28255 6.61272 6.63016 6.90227 7.30807 7.41916 8.00210 8.76977 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.002371 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.633189 B =11805.547764 C =13103.119467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.029 4.029 3 C -0.123 4.123 4 C -0.247 4.247 5 C 0.532 3.468 6 O -0.588 6.588 7 N -0.708 5.708 8 C 0.139 3.861 9 C -0.054 4.054 10 C -0.119 4.119 11 C -0.103 4.103 12 C -0.112 4.112 13 C 0.051 3.949 14 N -0.527 5.527 15 C 0.054 3.946 16 C 0.450 3.550 17 O -0.599 6.599 18 N -0.596 5.596 19 C -0.323 4.323 20 H 0.054 0.946 21 C -0.019 4.019 22 N -0.937 5.937 23 Si 0.966 3.034 24 H -0.255 1.255 25 H -0.277 1.277 26 H -0.233 1.233 27 C 0.070 3.930 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.158 0.842 35 H 0.413 0.587 36 H 0.035 0.965 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.041 0.959 47 H 0.071 0.929 48 H 0.123 0.877 49 H 0.388 0.612 50 H 0.278 0.722 51 H 0.048 0.952 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.762 19.030 -16.465 30.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.031 4.031 3 C -0.179 4.179 4 C -0.268 4.268 5 C 0.323 3.677 6 O -0.471 6.471 7 N -0.361 5.361 8 C 0.014 3.986 9 C -0.055 4.055 10 C -0.176 4.176 11 C -0.140 4.140 12 C -0.149 4.149 13 C -0.076 4.076 14 N -0.252 5.252 15 C -0.077 4.077 16 C 0.238 3.762 17 O -0.483 6.483 18 N -0.238 5.238 19 C -0.452 4.452 20 H 0.072 0.928 21 C -0.217 4.217 22 N -0.578 5.578 23 Si 0.786 3.214 24 H -0.180 1.180 25 H -0.202 1.202 26 H -0.157 1.157 27 C -0.058 4.058 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.176 0.824 35 H 0.252 0.748 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.059 0.941 47 H 0.089 0.911 48 H 0.141 0.859 49 H 0.223 0.777 50 H 0.087 0.913 51 H 0.067 0.933 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 17.073 19.521 -15.473 30.198 hybrid contribution -1.174 -1.393 -0.407 1.867 sum 15.898 18.128 -15.879 28.871 Atomic orbital electron populations 1.21034 0.92374 1.01794 1.02415 1.22883 0.96202 0.96040 0.87985 1.21084 1.00494 0.92192 1.04136 1.22441 1.01578 0.90419 1.12318 1.19231 0.86722 0.85512 0.76197 1.90772 1.17053 1.88308 1.50991 1.45773 1.13225 1.04651 1.72429 1.21099 0.94170 0.82984 1.00317 1.20648 0.95417 0.91758 0.97632 1.21632 1.00049 1.01823 0.94140 1.21634 0.95682 0.99558 0.97133 1.21618 0.97511 0.92469 1.03327 1.22290 0.93313 1.00235 0.91750 1.61383 1.14090 1.00404 1.49336 1.21826 0.97314 0.94486 0.94071 1.20948 0.82862 0.82350 0.90050 1.90540 1.70167 1.42337 1.45223 1.42069 1.37452 1.24106 1.20187 1.18969 1.18091 1.09505 0.98685 0.92810 1.26123 0.95061 1.00339 1.00150 1.69809 1.25375 1.32648 1.29934 0.85354 0.78978 0.78284 0.78819 1.17967 1.20177 1.15687 1.21964 0.94461 0.90570 0.98832 0.90613 0.92838 0.91511 0.90328 0.89162 0.89059 0.82442 0.74842 0.94668 0.92191 0.96207 0.91486 0.91384 0.91673 0.89756 0.91192 0.88732 0.89356 0.94070 0.91118 0.85911 0.77667 0.91253 0.93330 0.94971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.34 71.24 0.59 -1.81 16 2 C -0.03 -0.46 6.11 -17.62 -0.11 -0.57 16 3 C -0.12 -0.95 10.07 71.23 0.72 -0.23 16 4 C -0.25 -4.15 9.67 23.43 0.23 -3.92 16 5 C 0.53 13.18 7.69 86.57 0.67 13.85 16 6 O -0.59 -19.65 13.23 -4.07 -0.05 -19.70 16 7 N -0.71 -15.00 4.98 -466.72 -2.32 -17.32 16 8 C 0.14 3.70 4.57 86.38 0.39 4.09 16 9 C -0.05 -1.31 0.53 -52.13 -0.03 -1.33 16 10 C -0.12 -3.18 7.86 71.98 0.57 -2.61 16 11 C -0.10 -1.69 4.58 30.67 0.14 -1.55 16 12 C -0.11 -1.73 5.74 30.64 0.18 -1.56 16 13 C 0.05 0.99 5.46 86.32 0.47 1.46 16 14 N -0.53 -15.31 3.64 -900.97 -3.28 -18.58 16 15 C 0.05 1.68 5.45 85.56 0.47 2.15 16 16 C 0.45 20.58 7.31 87.66 0.64 21.22 16 17 O -0.60 -33.28 14.27 -3.07 -0.04 -33.32 16 18 N -0.60 -28.63 5.09 -306.99 -1.56 -30.19 16 19 C -0.32 -19.29 10.16 84.04 0.85 -18.44 16 20 H 0.05 3.83 7.39 -2.91 -0.02 3.80 16 21 C -0.02 -1.05 5.50 84.93 0.47 -0.59 16 22 N -0.94 -57.67 13.96 21.66 0.30 -57.37 16 23 Si 0.97 39.72 27.74 68.60 1.90 41.62 16 24 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 25 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.23 -8.14 6.52 99.48 0.65 -7.49 16 27 C 0.07 2.19 3.84 86.32 0.33 2.52 16 28 H 0.08 1.10 7.71 -2.39 -0.02 1.08 16 29 H 0.05 1.33 7.52 -2.38 -0.02 1.31 16 30 H 0.07 1.63 6.99 -2.39 -0.02 1.61 16 31 H 0.08 0.50 7.71 -2.39 -0.02 0.48 16 32 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.41 6.07 6.17 -92.70 -0.57 5.50 16 36 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 1.90 6.01 -2.39 -0.01 1.89 16 40 H 0.07 1.35 6.86 -2.39 -0.02 1.33 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.02 6.95 -2.39 -0.02 1.00 16 43 H 0.07 1.21 6.58 -2.39 -0.02 1.20 16 44 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.09 1.48 8.01 -2.39 -0.02 1.46 16 46 H 0.04 0.72 8.14 -2.39 -0.02 0.71 16 47 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 48 H 0.12 3.08 7.98 -2.39 -0.02 3.06 16 49 H 0.39 15.50 5.76 -92.71 -0.53 14.97 16 50 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 51 H 0.05 2.02 6.03 -2.39 -0.01 2.01 16 52 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -83.82 401.94 1.28 -82.54 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.24 Total: 39.65 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 6.58 Total: 12.68 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -6.86 Total: -123.47 kcal Atomic # 8 Polarization: -52.92 SS G_CDS: -0.10 Total: -53.02 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 1.90 Total: 41.62 kcal Total: -83.82 1.28 -82.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278641880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.008 kcal (2) G-P(sol) polarization free energy of solvation -83.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds