Wall clock time and date at job start Tue Mar 31 2020 19:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46994 * 2 1 4 4 C 1.50696 * 109.47014 * 119.99268 * 2 1 3 5 5 O 1.21284 * 120.00078 * 0.02562 * 4 2 1 6 6 N 1.34779 * 120.00352 * 180.02562 * 4 2 1 7 7 C 1.46493 * 120.00180 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.47123 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.42377 * 59.89247 * 8 7 6 10 10 C 1.53132 * 109.38508 * 179.75882 * 8 7 6 11 11 C 1.53706 * 108.88923 * 66.04078 * 10 8 7 12 12 H 1.08994 * 112.13007 * 188.36875 * 11 10 8 13 13 C 1.54613 * 107.80909 * 312.37800 * 11 10 8 14 14 C 1.54287 * 104.84238 * 88.55776 * 13 11 10 15 15 C 1.54611 * 104.84360 * 0.02562 * 14 13 11 16 16 H 1.08996 * 112.21963 * 147.48431 * 15 14 13 17 17 C 1.53131 * 109.42669 * 300.00019 * 8 7 6 18 18 N 1.48714 * 107.24073 * 64.08548 * 11 10 8 19 19 C 1.46902 * 111.00239 * 168.34562 * 18 11 10 20 20 C 1.50698 * 109.46842 * 284.46913 * 19 18 11 21 21 O 1.21291 * 120.00244 * 359.97438 * 20 19 18 22 22 N 1.34777 * 119.99889 * 179.97438 * 20 19 18 23 23 C 1.37098 * 120.00349 * 180.02562 * 22 20 19 24 24 H 1.07999 * 119.99872 * 359.97438 * 23 22 20 25 25 C 1.38946 * 120.00200 * 180.02562 * 23 22 20 26 26 N 1.31410 * 120.00148 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 119.99904 * 359.97438 * 25 23 22 28 28 H 1.48502 * 109.47230 * 90.00485 * 27 25 23 29 29 H 1.48505 * 109.46921 * 209.99759 * 27 25 23 30 30 H 1.48493 * 109.47394 * 330.00273 * 27 25 23 31 31 H 1.08992 * 109.47252 * 300.00611 * 1 2 3 32 32 H 1.09001 * 109.46605 * 60.00432 * 1 2 3 33 33 H 1.08997 * 109.46629 * 180.02562 * 1 2 3 34 34 H 1.08990 * 109.47434 * 239.99903 * 2 1 3 35 35 H 1.08999 * 109.46588 * 299.99833 * 3 2 1 36 36 H 1.08996 * 109.46987 * 59.99290 * 3 2 1 37 37 H 1.09000 * 109.47066 * 179.97438 * 3 2 1 38 38 H 0.97003 * 119.99373 * 0.02562 * 6 4 2 39 39 H 1.08995 * 109.47806 * 60.00106 * 7 6 4 40 40 H 1.09006 * 109.46974 * 299.99655 * 7 6 4 41 41 H 1.09000 * 109.56919 * 185.86372 * 10 8 7 42 42 H 1.08997 * 109.57213 * 306.09918 * 10 8 7 43 43 H 1.08996 * 110.36252 * 207.40283 * 13 11 10 44 44 H 1.08996 * 110.36202 * 329.61145 * 13 11 10 45 45 H 1.08998 * 110.36827 * 241.15942 * 14 13 11 46 46 H 1.09001 * 110.36346 * 118.83649 * 14 13 11 47 47 H 1.09000 * 109.56586 * 174.16719 * 17 8 7 48 48 H 1.08994 * 109.66773 * 53.86400 * 17 8 7 49 49 H 1.08999 * 109.46968 * 44.46761 * 19 18 11 50 50 H 1.08999 * 109.46948 * 164.46990 * 19 18 11 51 51 H 0.97003 * 119.99961 * 359.97438 * 22 20 19 52 52 H 0.97001 * 120.00277 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7102 1.2305 5 8 1.2442 -1.1715 2.0287 6 7 3.3574 -0.8329 1.4442 7 6 3.8456 -1.5239 2.6401 8 6 5.3757 -1.5238 2.6402 9 1 5.7381 -0.4958 2.6387 10 6 5.8839 -2.2412 3.8941 11 6 5.4921 -3.7251 3.8116 12 1 5.6982 -4.2565 4.7407 13 6 3.9995 -3.7988 3.4149 14 6 4.0003 -3.8014 1.8720 15 6 5.4933 -3.7298 1.4766 16 1 5.7002 -4.2644 0.5496 17 6 5.8852 -2.2455 1.3894 18 7 6.2091 -4.3062 2.6455 19 6 6.1170 -5.7723 2.6480 20 6 7.0478 -6.3323 3.6925 21 8 7.7220 -5.5838 4.3681 22 7 7.1312 -7.6649 3.8760 23 6 7.9775 -8.1744 4.8266 24 1 8.5778 -7.5080 5.4281 25 6 8.0638 -9.5483 5.0154 26 7 8.8755 -10.0367 5.9262 27 14 7.0261 -10.7011 3.9745 28 1 7.7774 -11.0728 2.7487 29 1 6.7138 -11.9260 4.7540 30 1 5.7621 -10.0213 3.5933 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3632 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.1300 1.4426 0.0005 38 1 3.9877 -0.4637 0.8060 39 1 3.4828 -2.5517 2.6396 40 1 3.4819 -1.0105 3.5303 41 1 6.9688 -2.1527 3.9509 42 1 5.4342 -1.7917 4.7794 43 1 3.5507 -4.7162 3.7956 44 1 3.4630 -2.9291 3.7940 45 1 3.4645 -2.9321 1.4909 46 1 3.5519 -4.7202 1.4941 47 1 6.9701 -2.1572 1.3335 48 1 5.4364 -1.8010 0.5011 49 1 5.0938 -6.0717 2.8751 50 1 6.3986 -6.1557 1.6673 51 1 6.5917 -8.2636 3.3360 52 1 8.9360 -10.9958 6.0578 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279203888.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:09 Heat of formation + Delta-G solvation = -2.186105 kcal Electronic energy + Delta-G solvation = -31045.400388 eV Core-core repulsion = 27047.373474 eV Total energy + Delta-G solvation = -3998.026915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.31408 -40.66195 -39.98286 -36.60007 -35.88089 -35.39313 -33.93093 -33.65337 -32.72121 -32.21121 -29.57811 -27.96508 -27.24979 -25.57296 -25.17780 -24.00884 -22.34308 -21.68604 -21.18012 -20.89963 -20.19168 -19.88265 -18.11323 -17.99000 -17.64188 -16.96664 -16.75599 -16.59251 -16.10571 -15.65266 -15.42309 -15.23516 -14.91329 -14.78776 -14.49481 -14.37323 -14.20259 -14.07931 -13.81234 -13.63461 -13.49774 -13.34458 -13.18181 -13.11127 -12.88938 -12.87444 -12.72842 -12.42277 -12.29728 -12.02167 -11.99036 -11.94730 -11.75890 -11.54821 -11.46150 -11.31345 -11.19986 -10.74796 -10.63237 -10.35986 -10.23085 -9.55685 -9.34258 -8.41073 -6.01324 1.28890 1.34427 1.42988 1.72850 1.98477 2.22311 2.31980 2.65373 3.13683 3.20767 3.60486 3.64870 3.77316 3.84221 3.99073 4.05165 4.07012 4.11558 4.13752 4.18507 4.26434 4.36602 4.38140 4.44117 4.47139 4.54627 4.57838 4.70318 4.78632 4.80104 4.85515 4.93218 4.93457 4.96865 5.02266 5.10571 5.15222 5.16764 5.17893 5.30555 5.33388 5.36225 5.37286 5.39160 5.54211 5.58722 5.92696 5.96152 6.13608 6.61046 6.65643 6.89689 7.36083 7.41414 7.99501 8.76742 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024911 B = 0.002457 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.746312 B =11391.077595 C =11907.331373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.506 3.494 5 O -0.590 6.590 6 N -0.711 5.711 7 C 0.005 3.995 8 C -0.079 4.079 9 H 0.087 0.913 10 C -0.096 4.096 11 C 0.069 3.931 12 H 0.059 0.941 13 C -0.181 4.181 14 C -0.176 4.176 15 C 0.064 3.936 16 H 0.113 0.887 17 C -0.098 4.098 18 N -0.495 5.495 19 C 0.042 3.958 20 C 0.454 3.546 21 O -0.605 6.605 22 N -0.596 5.596 23 C -0.325 4.325 24 H 0.054 0.946 25 C -0.017 4.017 26 N -0.936 5.936 27 Si 0.965 3.035 28 H -0.256 1.256 29 H -0.275 1.275 30 H -0.234 1.234 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.410 0.590 39 H 0.180 0.820 40 H 0.039 0.961 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.111 0.889 45 H 0.121 0.879 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.096 0.904 49 H 0.073 0.927 50 H 0.119 0.881 51 H 0.388 0.612 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.678 20.541 -20.005 33.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.132 4.132 3 C -0.199 4.199 4 C 0.294 3.706 5 O -0.470 6.470 6 N -0.364 5.364 7 C -0.115 4.115 8 C -0.098 4.098 9 H 0.105 0.895 10 C -0.135 4.135 11 C -0.040 4.040 12 H 0.077 0.923 13 C -0.219 4.219 14 C -0.214 4.214 15 C -0.044 4.044 16 H 0.131 0.869 17 C -0.136 4.136 18 N -0.217 5.217 19 C -0.089 4.089 20 C 0.241 3.759 21 O -0.489 6.489 22 N -0.238 5.238 23 C -0.454 4.454 24 H 0.072 0.928 25 C -0.216 4.216 26 N -0.577 5.577 27 Si 0.785 3.215 28 H -0.180 1.180 29 H -0.201 1.201 30 H -0.158 1.158 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.140 0.860 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.248 0.752 39 H 0.196 0.804 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.128 0.872 45 H 0.138 0.862 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.115 0.885 49 H 0.091 0.909 50 H 0.137 0.863 51 H 0.223 0.777 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.058 20.695 -18.866 32.282 hybrid contribution -0.422 -1.210 0.501 1.376 sum -16.481 19.485 -18.365 31.441 Atomic orbital electron populations 1.21621 0.93280 1.02003 1.02248 1.21375 0.97801 0.98135 0.95939 1.21804 1.02021 0.92981 1.03118 1.21326 0.82170 0.79042 0.88100 1.90692 1.56569 1.50729 1.49035 1.46174 1.06858 1.57947 1.25408 1.24879 0.95207 1.04572 0.86844 1.21193 0.93306 1.00068 0.95257 0.89461 1.21586 1.01131 0.92824 0.97935 1.22894 0.90659 0.96347 0.94095 0.92276 1.23755 0.98116 1.03201 0.96825 1.23723 0.99320 1.04292 0.94024 1.23272 0.90059 0.96916 0.94155 0.86929 1.21739 1.01722 0.92721 0.97377 1.65097 1.50291 1.03332 1.03022 1.21929 0.97457 0.90719 0.98838 1.20914 0.86200 0.81794 0.86963 1.90534 1.48419 1.58862 1.51044 1.42064 1.39956 1.06589 1.35188 1.18977 1.19847 0.92119 1.14441 0.92758 1.26107 0.98657 0.98338 0.98451 1.69805 1.38758 1.14373 1.34730 0.85366 0.79445 0.78063 0.78644 1.17993 1.20060 1.15767 0.93832 0.89798 0.93376 0.85969 0.89626 0.93549 0.90769 0.75229 0.80427 0.94262 0.92128 0.91293 0.92350 0.87153 0.86152 0.91196 0.91234 0.88546 0.90939 0.86314 0.77682 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 8.48 71.98 0.61 -1.05 16 2 C -0.11 -1.11 3.26 -11.54 -0.04 -1.15 16 3 C -0.14 -0.91 9.09 71.98 0.65 -0.26 16 4 C 0.51 8.74 6.90 87.66 0.61 9.35 16 5 O -0.59 -16.04 15.98 -3.04 -0.05 -16.09 16 6 N -0.71 -9.33 4.27 -463.06 -1.98 -11.30 16 7 C 0.01 0.09 2.68 86.38 0.23 0.32 16 8 C -0.08 -1.36 2.77 -10.70 -0.03 -1.39 16 9 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 10 C -0.10 -2.40 5.37 30.88 0.17 -2.24 16 11 C 0.07 2.05 3.22 45.35 0.15 2.19 16 12 H 0.06 2.27 7.08 -2.39 -0.02 2.26 16 13 C -0.18 -4.28 4.98 31.58 0.16 -4.12 16 14 C -0.18 -3.29 5.19 31.58 0.16 -3.12 16 15 C 0.06 1.25 3.67 45.38 0.17 1.41 16 16 H 0.11 1.81 8.01 -2.39 -0.02 1.79 16 17 C -0.10 -1.52 5.27 30.90 0.16 -1.36 16 18 N -0.49 -14.54 4.59 -832.09 -3.82 -18.36 16 19 C 0.04 1.34 5.14 85.56 0.44 1.78 16 20 C 0.45 20.97 7.45 87.66 0.65 21.62 16 21 O -0.61 -34.07 14.96 -3.06 -0.05 -34.12 16 22 N -0.60 -28.76 5.09 -306.99 -1.56 -30.33 16 23 C -0.32 -19.35 10.16 84.04 0.85 -18.50 16 24 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 25 C -0.02 -0.97 5.50 84.93 0.47 -0.51 16 26 N -0.94 -57.26 13.96 21.66 0.30 -56.96 16 27 Si 0.96 39.58 27.74 68.60 1.90 41.48 16 28 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 29 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 30 H -0.23 -8.18 6.52 99.48 0.65 -7.53 16 31 H 0.04 0.69 8.10 -2.39 -0.02 0.67 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 34 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.07 0.27 7.56 -2.39 -0.02 0.26 16 38 H 0.41 2.86 6.73 -92.71 -0.62 2.24 16 39 H 0.18 3.54 1.11 -111.37 -0.12 3.42 16 40 H 0.04 0.84 7.99 -2.38 -0.02 0.83 16 41 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.46 7.88 -2.39 -0.02 1.44 16 44 H 0.11 2.52 4.84 -2.39 -0.01 2.51 16 45 H 0.12 2.05 3.92 -2.39 -0.01 2.04 16 46 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.10 0.85 6.73 -2.39 -0.02 0.83 16 49 H 0.07 2.04 6.89 -2.39 -0.02 2.02 16 50 H 0.12 3.05 7.99 -2.39 -0.02 3.03 16 51 H 0.39 15.60 5.76 -92.71 -0.53 15.07 16 52 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -82.99 384.11 -0.22 -83.21 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: -0.39 Total: 39.48 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 5.41 Total: 2.98 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -7.05 Total: -116.94 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -0.09 Total: -50.21 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 1.90 Total: 41.48 kcal Total: -82.99 -0.22 -83.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279203888.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.026 kcal (2) G-P(sol) polarization free energy of solvation -82.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds