Wall clock time and date at job start Tue Mar 31 2020 19:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47506 * 2 1 4 4 C 1.50704 * 109.47313 * 120.00008 * 2 1 3 5 5 O 1.21278 * 120.00292 * 239.99940 * 4 2 1 6 6 N 1.34781 * 119.99669 * 59.99991 * 4 2 1 7 7 C 1.46500 * 119.99792 * 180.02562 * 6 4 2 8 8 H 1.09003 * 109.90161 * 34.00841 * 7 6 4 9 9 C 1.52837 * 109.85869 * 273.01824 * 7 6 4 10 10 C 1.51148 * 110.44056 * 304.88202 * 9 7 6 11 11 C 1.49129 * 117.46280 * 325.46075 * 10 9 7 12 12 H 1.09003 * 106.23039 * 126.08643 * 11 10 9 13 13 C 1.54798 * 110.93609 * 241.03066 * 11 10 9 14 14 N 1.48917 * 103.81008 * 156.90396 * 13 11 10 15 15 C 1.46901 * 111.00104 * 200.11205 * 14 13 11 16 16 C 1.50701 * 109.47012 * 176.43556 * 15 14 13 17 17 O 1.21292 * 120.00210 * 6.02512 * 16 15 14 18 18 N 1.34775 * 119.99863 * 186.02210 * 16 15 14 19 19 C 1.37099 * 119.99817 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00096 * 359.97438 * 19 18 16 21 21 C 1.38956 * 119.99427 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00343 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99524 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46967 * 59.99860 * 23 21 19 25 25 H 1.48495 * 109.46886 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47094 * 299.99857 * 23 21 19 27 27 C 1.48916 * 103.58927 * 319.30467 * 14 13 11 28 28 C 1.51152 * 120.45704 * 4.94204 * 11 10 9 29 29 H 1.08997 * 108.47473 * 117.48593 * 28 11 10 30 30 C 1.51063 * 116.49152 * 354.74975 * 28 11 10 31 31 H 1.09001 * 109.47168 * 300.00013 * 1 2 3 32 32 H 1.09001 * 109.47083 * 60.00138 * 1 2 3 33 33 H 1.08998 * 109.47503 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47168 * 239.99987 * 2 1 3 35 35 H 1.08997 * 109.47275 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46837 * 300.00013 * 3 2 1 37 37 H 1.09001 * 109.46918 * 59.99834 * 3 2 1 38 38 H 0.96993 * 120.00068 * 359.97438 * 6 4 2 39 39 H 1.09003 * 109.22141 * 64.67754 * 9 7 6 40 40 H 1.09004 * 109.21985 * 184.06429 * 9 7 6 41 41 H 1.08995 * 106.86905 * 204.24723 * 10 9 7 42 42 H 1.09000 * 108.85684 * 88.29696 * 10 9 7 43 43 H 1.08997 * 110.55232 * 38.32343 * 13 11 10 44 44 H 1.08995 * 110.55559 * 275.49310 * 13 11 10 45 45 H 1.08998 * 109.46939 * 296.43586 * 15 14 13 46 46 H 1.09000 * 109.46918 * 56.43926 * 15 14 13 47 47 H 0.96999 * 120.00232 * 0.02562 * 18 16 15 48 48 H 0.97003 * 119.99878 * 180.02562 * 22 21 19 49 49 H 1.09003 * 110.54603 * 159.20291 * 27 14 13 50 50 H 1.09004 * 110.54644 * 282.00246 * 27 14 13 51 51 H 1.09010 * 109.22014 * 155.58665 * 30 28 11 52 52 H 1.08997 * 109.22260 * 274.92610 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -0.1211 2.0288 6 7 1.7067 -2.0008 1.4437 7 6 2.1946 -2.6913 2.6401 8 1 2.2504 -1.9926 3.4750 9 6 3.5756 -3.2873 2.3688 10 6 3.5333 -4.1859 1.1542 11 6 2.2853 -4.9680 0.9204 12 1 1.9661 -4.7360 -0.0957 13 6 2.5728 -6.4889 0.9450 14 7 1.2538 -7.0947 1.2779 15 6 1.4177 -8.4560 1.8051 16 6 0.0734 -9.0025 2.2115 17 8 -0.9347 -8.3706 1.9756 18 7 -0.0087 -10.1935 2.8371 19 6 -1.2317 -10.6909 3.2063 20 1 -2.1293 -10.1283 2.9963 21 6 -1.3162 -11.9186 3.8518 22 7 -0.2239 -12.6025 4.1086 23 14 -2.9826 -12.5961 4.3556 24 1 -3.8332 -12.7651 3.1501 25 1 -2.8015 -13.9110 5.0214 26 1 -3.6377 -11.6509 5.2952 27 6 0.7022 -6.1825 2.3177 28 6 1.0788 -4.7694 1.8091 29 1 0.2577 -4.3946 1.1981 30 6 1.2575 -3.8462 2.9915 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.1488 -2.4720 0.8054 39 1 4.2854 -2.4802 2.1874 40 1 3.8971 -3.8589 3.2394 41 1 4.3564 -4.8932 1.2552 42 1 3.7222 -3.5850 0.2646 43 1 3.3083 -6.7269 1.7134 44 1 2.9149 -6.8295 -0.0322 45 1 1.8517 -9.0939 1.0352 46 1 2.0777 -8.4327 2.6723 47 1 0.7975 -10.6987 3.0260 48 1 -0.2830 -13.4597 4.5588 49 1 -0.3805 -6.2891 2.3847 50 1 1.1674 -6.3780 3.2839 51 1 0.2869 -3.4448 3.2832 52 1 1.6778 -4.4084 3.8254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282939602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:10 Heat of formation + Delta-G solvation = -84.357377 kcal Electronic energy + Delta-G solvation = -30192.310514 eV Core-core repulsion = 26190.720385 eV Total energy + Delta-G solvation = -4001.590128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.89201 -39.56860 -38.14275 -36.30697 -34.75248 -33.97688 -33.25254 -32.08402 -31.26182 -30.64224 -27.46180 -26.97419 -26.96626 -24.53894 -24.07073 -22.57791 -21.53282 -21.38503 -20.07025 -19.15811 -18.34965 -17.83433 -17.41340 -16.60646 -15.97382 -15.86339 -15.44007 -15.18122 -14.91571 -14.69634 -14.51978 -14.22911 -13.97085 -13.92617 -13.56737 -13.33903 -13.09875 -12.92998 -12.63561 -12.62607 -12.41006 -12.34584 -12.13820 -11.91956 -11.67811 -11.55540 -11.51327 -11.47361 -11.39941 -11.21027 -10.96111 -10.86868 -10.46012 -10.38709 -10.25118 -10.21423 -10.13984 -9.86491 -9.48885 -9.16646 -8.47609 -8.06314 -7.95218 -6.42956 -3.83840 2.46772 2.99735 3.18750 3.24647 3.28822 3.89322 4.03598 4.24055 4.31662 4.39335 4.43893 4.54892 4.60896 4.64050 4.85076 4.92736 5.01918 5.07052 5.09775 5.17715 5.24415 5.26040 5.29325 5.38085 5.46609 5.49070 5.50986 5.59609 5.67601 5.71634 5.75366 5.77545 5.80116 5.82031 5.87459 5.91969 5.93019 5.95503 6.00131 6.08959 6.22731 6.28294 6.31884 6.39977 6.54448 7.11335 7.23514 7.33835 7.53536 8.04557 8.05879 8.60341 9.16574 9.52952 10.04728 10.74676 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023554 B = 0.002134 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.485026 B =13115.598960 C =13583.499291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.132 4.132 4 C 0.516 3.484 5 O -0.544 6.544 6 N -0.718 5.718 7 C 0.148 3.852 8 H 0.090 0.910 9 C -0.125 4.125 10 C -0.101 4.101 11 C -0.079 4.079 12 H 0.064 0.936 13 C 0.031 3.969 14 N -0.485 5.485 15 C 0.034 3.966 16 C 0.443 3.557 17 O -0.579 6.579 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.041 3.959 28 C -0.083 4.083 29 H 0.072 0.928 30 C -0.119 4.119 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.401 0.599 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.042 0.958 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.047 0.953 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.103 0.897 50 H 0.039 0.961 51 H 0.071 0.929 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.061 21.141 -7.043 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.138 4.138 3 C -0.189 4.189 4 C 0.303 3.697 5 O -0.422 6.422 6 N -0.370 5.370 7 C 0.044 3.956 8 H 0.108 0.892 9 C -0.164 4.164 10 C -0.139 4.139 11 C -0.098 4.098 12 H 0.083 0.917 13 C -0.097 4.097 14 N -0.208 5.208 15 C -0.098 4.098 16 C 0.228 3.772 17 O -0.463 6.463 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.087 4.087 28 C -0.102 4.102 29 H 0.090 0.910 30 C -0.157 4.157 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.236 0.764 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.121 0.879 50 H 0.057 0.943 51 H 0.090 0.910 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.541 21.700 -7.010 24.019 hybrid contribution 0.075 -1.262 0.730 1.460 sum 7.616 20.438 -6.280 22.697 Atomic orbital electron populations 1.21796 0.92832 1.02682 1.02968 1.21322 0.97672 0.98068 0.96763 1.21600 1.01698 0.93605 1.02037 1.20695 0.79819 0.81672 0.87549 1.90683 1.38064 1.66319 1.47084 1.46087 1.53476 1.11822 1.25584 1.20843 0.93580 0.93270 0.87926 0.89238 1.21507 0.97181 0.99014 0.98697 1.20254 0.97248 0.98184 0.98189 1.20385 0.94479 0.94748 1.00216 0.91700 1.23596 0.91657 0.93561 1.00901 1.65546 1.18355 1.00501 1.36432 1.22067 0.97123 0.91501 0.99122 1.19707 0.89919 0.83543 0.83996 1.90489 1.37000 1.59710 1.59133 1.41866 1.09668 1.17281 1.51225 1.19642 0.86282 1.02389 1.34567 0.87980 1.25266 0.98970 0.96397 0.97324 1.69603 1.27719 1.14826 1.42159 0.85919 0.81552 0.77854 0.78897 1.19886 1.20984 1.19921 1.23550 1.03045 0.89554 0.92517 1.20859 0.97232 0.96023 0.96075 0.90992 1.21503 1.00051 0.95647 0.98539 0.92026 0.91370 0.91993 0.88608 0.92048 0.92134 0.91971 0.76362 0.91561 0.91055 0.92241 0.92600 0.93962 0.90353 0.89238 0.93486 0.77504 0.91819 0.87907 0.94318 0.91016 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.09 37.15 0.34 -0.52 16 2 C -0.12 -0.83 3.26 -91.77 -0.30 -1.13 16 3 C -0.13 -0.97 8.48 37.16 0.32 -0.65 16 4 C 0.52 5.15 7.14 -10.98 -0.08 5.07 16 5 O -0.54 -7.46 15.64 5.56 0.09 -7.37 16 6 N -0.72 -6.21 4.32 -53.97 -0.23 -6.44 16 7 C 0.15 1.40 2.89 -68.10 -0.20 1.20 16 8 H 0.09 0.96 7.57 -51.93 -0.39 0.56 16 9 C -0.13 -1.16 5.64 -27.75 -0.16 -1.32 16 10 C -0.10 -0.90 5.08 -29.57 -0.15 -1.05 16 11 C -0.08 -0.81 2.39 -92.51 -0.22 -1.03 16 12 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 13 C 0.03 0.38 5.71 -1.76 -0.01 0.37 16 14 N -0.49 -7.87 5.21 -230.21 -1.20 -9.06 16 15 C 0.03 0.60 5.40 -4.98 -0.03 0.57 16 16 C 0.44 10.35 7.43 -10.99 -0.08 10.27 16 17 O -0.58 -15.33 14.06 5.55 0.08 -15.25 16 18 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 19 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 23 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.04 0.63 5.07 -1.74 -0.01 0.62 16 28 C -0.08 -0.92 2.15 -91.56 -0.20 -1.12 16 29 H 0.07 0.79 7.68 -51.93 -0.40 0.39 16 30 C -0.12 -1.16 5.09 -27.80 -0.14 -1.30 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.34 7.56 -51.93 -0.39 -0.05 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 38 H 0.40 2.96 6.51 -40.82 -0.27 2.70 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 41 H 0.06 0.52 7.30 -51.93 -0.38 0.15 16 42 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 43 H 0.04 0.50 7.61 -51.93 -0.40 0.11 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 46 H 0.05 0.77 7.99 -51.93 -0.41 0.36 16 47 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.10 1.93 6.57 -51.93 -0.34 1.59 16 50 H 0.04 0.60 7.34 -51.93 -0.38 0.22 16 51 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 52 H 0.08 0.79 7.41 -51.93 -0.38 0.41 16 LS Contribution 400.95 15.07 6.04 6.04 Total: -1.00 -32.11 400.95 -9.80 -41.91 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -9.06 Total: 10.16 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -1.15 Total: 2.06 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.77 Total: -53.46 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.16 Total: -22.63 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.11 -9.80 -41.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282939602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.443 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds