Wall clock time and date at job start Tue Mar 31 2020 19:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47323 * 2 1 4 4 C 1.50704 * 109.47006 * 120.00376 * 2 1 3 5 5 O 1.21278 * 119.99826 * 239.99802 * 4 2 1 6 6 N 1.34780 * 120.00037 * 59.99732 * 4 2 1 7 7 C 1.46496 * 119.99788 * 179.97438 * 6 4 2 8 8 H 1.09010 * 109.21694 * 35.61214 * 7 6 4 9 9 C 1.52832 * 109.22359 * 276.26447 * 7 6 4 10 10 C 1.52832 * 107.46422 * 303.51014 * 9 7 6 11 11 C 1.51063 * 110.76281 * 294.99914 * 10 9 7 12 12 H 1.09001 * 107.99992 * 272.94965 * 11 10 9 13 13 C 1.54836 * 109.76719 * 155.01833 * 11 10 9 14 14 N 1.48908 * 103.86523 * 209.13643 * 13 11 10 15 15 C 1.46896 * 111.00239 * 159.79492 * 14 13 11 16 16 C 1.50701 * 109.46946 * 69.87904 * 15 14 13 17 17 O 1.21293 * 120.00278 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00078 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99959 * 179.97438 * 18 16 15 20 20 H 1.07991 * 120.00408 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99816 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99922 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00126 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46986 * 270.00039 * 23 21 19 25 25 H 1.48496 * 109.47029 * 30.00056 * 23 21 19 26 26 H 1.48499 * 109.47352 * 149.99886 * 23 21 19 27 27 C 1.48925 * 103.58896 * 40.60585 * 14 13 11 28 28 C 1.51143 * 116.49839 * 35.24473 * 11 10 9 29 29 H 1.09003 * 106.64626 * 233.72946 * 28 11 10 30 30 C 1.49135 * 120.45706 * 355.45451 * 28 11 10 31 31 H 1.09002 * 109.47444 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47162 * 300.00143 * 1 2 3 33 33 H 1.09001 * 109.47262 * 59.99810 * 1 2 3 34 34 H 1.08999 * 109.46916 * 239.99381 * 2 1 3 35 35 H 1.09005 * 109.46621 * 180.02562 * 3 2 1 36 36 H 1.08995 * 109.47142 * 299.99879 * 3 2 1 37 37 H 1.08998 * 109.47089 * 60.00355 * 3 2 1 38 38 H 0.96997 * 119.99738 * 359.97438 * 6 4 2 39 39 H 1.08995 * 109.85914 * 63.00191 * 9 7 6 40 40 H 1.08999 * 109.85902 * 184.02917 * 9 7 6 41 41 H 1.08999 * 109.21673 * 174.66656 * 10 9 7 42 42 H 1.09008 * 109.21895 * 55.32971 * 10 9 7 43 43 H 1.09001 * 110.54756 * 90.54100 * 13 11 10 44 44 H 1.09006 * 110.55212 * 327.73531 * 13 11 10 45 45 H 1.08994 * 109.47346 * 309.87807 * 15 14 13 46 46 H 1.09006 * 109.47133 * 189.87199 * 15 14 13 47 47 H 0.97000 * 119.99555 * 359.97438 * 18 16 15 48 48 H 0.96996 * 120.00340 * 359.97438 * 22 21 19 49 49 H 1.09004 * 110.56056 * 77.87873 * 27 14 13 50 50 H 1.08998 * 110.55987 * 200.72410 * 27 14 13 51 51 H 1.08993 * 107.83847 * 125.64803 * 30 28 11 52 52 H 1.08995 * 107.83301 * 241.58118 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7296 -0.1212 2.0288 6 7 1.7067 -2.0009 1.4437 7 6 2.1954 -2.6917 2.6395 8 1 2.2206 -1.9905 3.4738 9 6 3.6085 -3.2119 2.3779 10 6 3.5461 -4.1067 1.1405 11 6 2.7026 -5.3312 1.4071 12 1 3.3466 -6.0957 1.8417 13 6 2.1322 -5.8745 0.0742 14 7 0.8504 -6.5200 0.4713 15 6 -0.0455 -6.6662 -0.6837 16 6 0.5094 -7.7076 -1.6211 17 8 1.5492 -8.2720 -1.3536 18 7 -0.1491 -8.0110 -2.7572 19 6 0.3560 -8.9579 -3.6103 20 1 1.2817 -9.4605 -3.3721 21 6 -0.3232 -9.2710 -4.7813 22 7 -1.4499 -8.6599 -5.0709 23 14 0.3654 -10.5608 -5.9441 24 1 1.2618 -9.9085 -6.9321 25 1 1.1332 -11.5674 -5.1680 26 1 -0.7515 -11.2319 -6.6564 27 6 0.2797 -5.5776 1.4733 28 6 1.5063 -5.1422 2.3114 29 1 1.5945 -5.8841 3.1051 30 6 1.2596 -3.8292 2.9741 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 3.1301 1.4423 -0.0005 36 1 1.6767 1.9562 -0.8899 37 1 1.6768 1.9562 0.8900 38 1 1.1487 -2.4721 0.8054 39 1 4.2833 -2.3754 2.1963 40 1 3.9551 -3.7891 3.2350 41 1 4.5555 -4.4178 0.8715 42 1 3.1120 -3.5451 0.3131 43 1 2.8108 -6.6077 -0.3618 44 1 1.9491 -5.0583 -0.6247 45 1 -0.1241 -5.7126 -1.2055 46 1 -1.0329 -6.9754 -0.3408 47 1 -0.9804 -7.5593 -2.9713 48 1 -1.8077 -7.9904 -4.4670 49 1 -0.1697 -4.7173 0.9772 50 1 -0.4528 -6.0843 2.1016 51 1 0.2471 -3.5134 2.7228 52 1 1.2978 -3.9869 4.0519 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282939604.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:13 Heat of formation + Delta-G solvation = -81.411181 kcal Electronic energy + Delta-G solvation = -30538.173459 eV Core-core repulsion = 26536.711087 eV Total energy + Delta-G solvation = -4001.462372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.93050 -39.62400 -38.25968 -36.42870 -34.76403 -34.31445 -33.44003 -32.20387 -31.17741 -30.44826 -27.46461 -27.16149 -26.80945 -24.37019 -23.93373 -22.93696 -21.51661 -21.35999 -20.15771 -19.52693 -18.45237 -17.90100 -17.54696 -16.64584 -16.01529 -15.99779 -15.71364 -15.46547 -14.91331 -14.66427 -14.44979 -14.24828 -13.99861 -13.74642 -13.64157 -13.55139 -13.14872 -12.98594 -12.82343 -12.72548 -12.64475 -12.32648 -12.19979 -11.87321 -11.72394 -11.53860 -11.46725 -11.40643 -11.22733 -11.20545 -11.05217 -10.88881 -10.49361 -10.34766 -10.23041 -10.11756 -9.87511 -9.87303 -9.53957 -9.23243 -8.59225 -8.11983 -8.02656 -6.76384 -3.89509 2.43754 2.94705 3.29560 3.34211 3.53314 3.82845 3.95897 4.26938 4.29972 4.32930 4.41054 4.51488 4.58555 4.62258 4.79634 4.88352 4.90598 5.03577 5.05304 5.12592 5.22417 5.26237 5.31576 5.34550 5.36873 5.43265 5.49449 5.49870 5.57697 5.60345 5.64983 5.69205 5.71777 5.77087 5.79012 5.86975 5.91048 5.93589 5.98979 6.01785 6.08494 6.15362 6.27650 6.37395 6.45955 7.01857 7.11799 7.27414 7.80128 8.01460 8.07302 8.59369 8.79766 9.46734 9.87807 10.67186 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.002581 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.110663 B =10847.941987 C =11896.252484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.131 4.131 4 C 0.517 3.483 5 O -0.543 6.543 6 N -0.722 5.722 7 C 0.152 3.848 8 H 0.086 0.914 9 C -0.127 4.127 10 C -0.108 4.108 11 C -0.080 4.080 12 H 0.074 0.926 13 C 0.042 3.958 14 N -0.483 5.483 15 C 0.034 3.966 16 C 0.447 3.553 17 O -0.571 6.571 18 N -0.578 5.578 19 C -0.380 4.380 20 H 0.099 0.901 21 C -0.010 4.010 22 N -0.903 5.903 23 Si 1.093 2.907 24 H -0.285 1.285 25 H -0.283 1.283 26 H -0.281 1.281 27 C 0.031 3.969 28 C -0.082 4.082 29 H 0.070 0.930 30 C -0.114 4.114 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.399 0.601 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.036 0.964 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.375 0.625 48 H 0.261 0.739 49 H 0.038 0.962 50 H 0.080 0.920 51 H 0.069 0.931 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 17.146 13.496 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 C -0.189 4.189 4 C 0.304 3.696 5 O -0.420 6.420 6 N -0.374 5.374 7 C 0.048 3.952 8 H 0.104 0.896 9 C -0.165 4.165 10 C -0.146 4.146 11 C -0.099 4.099 12 H 0.092 0.908 13 C -0.086 4.086 14 N -0.206 5.206 15 C -0.098 4.098 16 C 0.233 3.767 17 O -0.453 6.453 18 N -0.216 5.216 19 C -0.510 4.510 20 H 0.117 0.883 21 C -0.212 4.212 22 N -0.542 5.542 23 Si 0.919 3.081 24 H -0.211 1.211 25 H -0.209 1.209 26 H -0.206 1.206 27 C -0.097 4.097 28 C -0.101 4.101 29 H 0.089 0.911 30 C -0.152 4.152 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.234 0.766 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.207 0.793 48 H 0.072 0.928 49 H 0.057 0.943 50 H 0.098 0.902 51 H 0.088 0.912 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.497 15.781 13.033 20.764 hybrid contribution -0.827 1.504 0.595 1.817 sum 2.670 17.285 13.628 22.173 Atomic orbital electron populations 1.21787 0.92882 1.02511 1.02991 1.21338 0.97639 0.98180 0.96816 1.21596 1.01764 0.93513 1.02036 1.20703 0.79744 0.81653 0.87520 1.90681 1.37911 1.66336 1.47033 1.46280 1.53521 1.11888 1.25756 1.20514 0.93668 0.93148 0.87856 0.89561 1.21803 0.96386 0.99459 0.98900 1.21125 1.00004 0.95582 0.97929 1.20855 0.95783 0.97589 0.95698 0.90794 1.23517 0.92666 0.97271 0.95116 1.65490 1.03155 1.41690 1.10305 1.22054 0.97273 0.98254 0.92232 1.19623 0.87050 0.86917 0.83112 1.90512 1.24547 1.55178 1.75110 1.41941 1.23058 1.37295 1.19323 1.20553 1.10218 1.17533 1.02673 0.88323 1.26493 0.95290 1.01908 0.97517 1.70874 1.19252 1.25299 1.38782 0.83102 0.75415 0.74674 0.74917 1.21137 1.20920 1.20637 1.23623 0.96695 0.94513 0.94894 1.20384 0.94828 0.96583 0.98267 0.91122 1.20626 0.99720 0.93613 1.01284 0.92191 0.92076 0.91270 0.88499 0.91992 0.92064 0.92007 0.76593 0.91244 0.90767 0.91730 0.92095 0.88428 0.94566 0.93477 0.89437 0.79256 0.92784 0.94339 0.90184 0.91213 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.09 37.16 0.34 -0.57 16 2 C -0.12 -0.92 3.26 -91.77 -0.30 -1.22 16 3 C -0.13 -1.04 8.48 37.15 0.32 -0.73 16 4 C 0.52 5.24 7.10 -10.98 -0.08 5.17 16 5 O -0.54 -7.42 15.65 5.56 0.09 -7.33 16 6 N -0.72 -6.20 3.71 -54.84 -0.20 -6.40 16 7 C 0.15 1.34 2.73 -69.00 -0.19 1.15 16 8 H 0.09 0.84 7.58 -51.92 -0.39 0.45 16 9 C -0.13 -1.19 5.67 -26.90 -0.15 -1.34 16 10 C -0.11 -1.11 5.26 -27.79 -0.15 -1.25 16 11 C -0.08 -0.92 2.93 -91.56 -0.27 -1.19 16 12 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 13 C 0.04 0.63 5.28 -1.74 -0.01 0.63 16 14 N -0.48 -7.67 5.10 -230.20 -1.17 -8.84 16 15 C 0.03 0.58 5.32 -4.98 -0.03 0.56 16 16 C 0.45 10.44 7.59 -10.98 -0.08 10.36 16 17 O -0.57 -15.39 14.42 5.55 0.08 -15.31 16 18 N -0.58 -14.39 5.28 -10.97 -0.06 -14.45 16 19 C -0.38 -10.63 9.68 -14.93 -0.14 -10.78 16 20 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 21 C -0.01 -0.27 5.50 -17.47 -0.10 -0.36 16 22 N -0.90 -25.12 13.68 55.50 0.76 -24.36 16 23 Si 1.09 24.23 29.92 -169.99 -5.09 19.15 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.03 0.35 5.70 -1.75 -0.01 0.34 16 28 C -0.08 -0.81 2.80 -92.51 -0.26 -1.07 16 29 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 30 C -0.11 -0.89 5.03 -29.61 -0.15 -1.04 16 31 H 0.06 0.35 7.56 -51.93 -0.39 -0.05 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 38 H 0.40 3.01 7.90 -40.82 -0.32 2.69 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.64 6.47 -51.92 -0.34 0.30 16 43 H 0.10 1.83 6.91 -51.93 -0.36 1.47 16 44 H 0.04 0.52 7.26 -51.93 -0.38 0.15 16 45 H 0.05 0.72 7.90 -51.93 -0.41 0.31 16 46 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 47 H 0.37 8.60 6.73 -40.82 -0.27 8.32 16 48 H 0.26 6.96 6.78 -40.82 -0.28 6.68 16 49 H 0.04 0.39 7.68 -51.93 -0.40 -0.01 16 50 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.07 0.51 7.17 -51.93 -0.37 0.14 16 52 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 LS Contribution 401.37 15.07 6.05 6.05 Total: -1.00 -33.72 401.37 -9.80 -43.52 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -8.99 Total: 9.33 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -1.26 Total: -1.35 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.68 Total: -54.05 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.17 Total: -22.64 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -5.09 Total: 19.15 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.72 -9.80 -43.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282939604.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.895 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds