Wall clock time and date at job start Tue Mar 31 2020 19:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47323 * 2 1 4 4 C 1.50704 * 109.47006 * 120.00376 * 2 1 3 5 5 O 1.21278 * 119.99826 * 239.99802 * 4 2 1 6 6 N 1.34780 * 120.00037 * 59.99732 * 4 2 1 7 7 C 1.46496 * 119.99788 * 179.97438 * 6 4 2 8 8 H 1.09010 * 109.21694 * 35.61214 * 7 6 4 9 9 C 1.52832 * 109.22359 * 276.26447 * 7 6 4 10 10 C 1.52832 * 107.46422 * 303.51014 * 9 7 6 11 11 C 1.51063 * 110.76281 * 294.99914 * 10 9 7 12 12 H 1.09001 * 107.99992 * 272.94965 * 11 10 9 13 13 C 1.54836 * 109.76719 * 155.01833 * 11 10 9 14 14 N 1.48908 * 103.86523 * 209.13643 * 13 11 10 15 15 C 1.46896 * 111.00239 * 159.79492 * 14 13 11 16 16 C 1.50701 * 109.46946 * 69.87904 * 15 14 13 17 17 O 1.21293 * 120.00278 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00078 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99959 * 179.97438 * 18 16 15 20 20 H 1.07991 * 120.00408 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99816 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99922 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00126 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46986 * 270.00039 * 23 21 19 25 25 H 1.48496 * 109.47029 * 30.00056 * 23 21 19 26 26 H 1.48499 * 109.47352 * 149.99886 * 23 21 19 27 27 C 1.48925 * 103.58896 * 40.60585 * 14 13 11 28 28 C 1.51143 * 116.49839 * 35.24473 * 11 10 9 29 29 H 1.09003 * 106.64626 * 233.72946 * 28 11 10 30 30 C 1.49135 * 120.45706 * 355.45451 * 28 11 10 31 31 H 1.09002 * 109.47444 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47162 * 300.00143 * 1 2 3 33 33 H 1.09001 * 109.47262 * 59.99810 * 1 2 3 34 34 H 1.08999 * 109.46916 * 239.99381 * 2 1 3 35 35 H 1.09005 * 109.46621 * 180.02562 * 3 2 1 36 36 H 1.08995 * 109.47142 * 299.99879 * 3 2 1 37 37 H 1.08998 * 109.47089 * 60.00355 * 3 2 1 38 38 H 0.96997 * 119.99738 * 359.97438 * 6 4 2 39 39 H 1.08995 * 109.85914 * 63.00191 * 9 7 6 40 40 H 1.08999 * 109.85902 * 184.02917 * 9 7 6 41 41 H 1.08999 * 109.21673 * 174.66656 * 10 9 7 42 42 H 1.09008 * 109.21895 * 55.32971 * 10 9 7 43 43 H 1.09001 * 110.54756 * 90.54100 * 13 11 10 44 44 H 1.09006 * 110.55212 * 327.73531 * 13 11 10 45 45 H 1.08994 * 109.47346 * 309.87807 * 15 14 13 46 46 H 1.09006 * 109.47133 * 189.87199 * 15 14 13 47 47 H 0.97000 * 119.99555 * 359.97438 * 18 16 15 48 48 H 0.96996 * 120.00340 * 359.97438 * 22 21 19 49 49 H 1.09004 * 110.56056 * 77.87873 * 27 14 13 50 50 H 1.08998 * 110.55987 * 200.72410 * 27 14 13 51 51 H 1.08993 * 107.83847 * 125.64803 * 30 28 11 52 52 H 1.08995 * 107.83301 * 241.58118 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7296 -0.1212 2.0288 6 7 1.7067 -2.0009 1.4437 7 6 2.1954 -2.6917 2.6395 8 1 2.2206 -1.9905 3.4738 9 6 3.6085 -3.2119 2.3779 10 6 3.5461 -4.1067 1.1405 11 6 2.7026 -5.3312 1.4071 12 1 3.3466 -6.0957 1.8417 13 6 2.1322 -5.8745 0.0742 14 7 0.8504 -6.5200 0.4713 15 6 -0.0455 -6.6662 -0.6837 16 6 0.5094 -7.7076 -1.6211 17 8 1.5492 -8.2720 -1.3536 18 7 -0.1491 -8.0110 -2.7572 19 6 0.3560 -8.9579 -3.6103 20 1 1.2817 -9.4605 -3.3721 21 6 -0.3232 -9.2710 -4.7813 22 7 -1.4499 -8.6599 -5.0709 23 14 0.3654 -10.5608 -5.9441 24 1 1.2618 -9.9085 -6.9321 25 1 1.1332 -11.5674 -5.1680 26 1 -0.7515 -11.2319 -6.6564 27 6 0.2797 -5.5776 1.4733 28 6 1.5063 -5.1422 2.3114 29 1 1.5945 -5.8841 3.1051 30 6 1.2596 -3.8292 2.9741 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 3.1301 1.4423 -0.0005 36 1 1.6767 1.9562 -0.8899 37 1 1.6768 1.9562 0.8900 38 1 1.1487 -2.4721 0.8054 39 1 4.2833 -2.3754 2.1963 40 1 3.9551 -3.7891 3.2350 41 1 4.5555 -4.4178 0.8715 42 1 3.1120 -3.5451 0.3131 43 1 2.8108 -6.6077 -0.3618 44 1 1.9491 -5.0583 -0.6247 45 1 -0.1241 -5.7126 -1.2055 46 1 -1.0329 -6.9754 -0.3408 47 1 -0.9804 -7.5593 -2.9713 48 1 -1.8077 -7.9904 -4.4670 49 1 -0.1697 -4.7173 0.9772 50 1 -0.4528 -6.0843 2.1016 51 1 0.2471 -3.5134 2.7228 52 1 1.2978 -3.9869 4.0519 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282939604.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:12 Heat of formation + Delta-G solvation = -104.996255 kcal Electronic energy + Delta-G solvation = -30539.196184 eV Core-core repulsion = 26536.711087 eV Total energy + Delta-G solvation = -4002.485097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.79388 -40.68576 -39.88884 -37.49533 -36.27934 -35.44687 -34.41459 -33.16740 -33.02175 -31.49930 -28.35677 -28.13321 -27.83874 -26.14287 -24.70171 -23.87659 -22.63122 -22.26565 -21.28793 -20.86857 -19.94450 -19.28327 -18.29334 -18.10138 -17.19623 -16.96763 -16.75295 -16.54200 -16.18401 -16.04649 -15.52277 -15.37124 -15.22729 -15.11451 -14.63289 -14.60451 -14.18625 -14.02749 -13.70195 -13.65435 -13.40496 -13.33978 -13.17639 -13.02401 -12.87413 -12.74087 -12.62743 -12.40048 -12.30329 -12.07492 -12.01041 -11.95073 -11.92634 -11.86662 -11.51560 -11.36182 -11.21853 -10.99930 -10.66069 -10.37048 -10.09311 -9.99697 -9.40771 -8.92060 -6.05723 1.51667 1.54499 1.67414 1.81300 2.02192 2.26137 2.39322 2.75666 3.16356 3.25424 3.43032 3.54087 3.67826 3.78863 3.97051 3.99332 4.03770 4.09136 4.11228 4.22360 4.29108 4.30280 4.36591 4.43560 4.47167 4.52563 4.65566 4.67526 4.70482 4.74862 4.85898 4.87370 4.91238 4.95406 5.01695 5.05137 5.10209 5.14024 5.18448 5.28725 5.30450 5.32503 5.35111 5.46557 5.60185 5.61960 5.87589 5.96209 6.01426 6.57292 6.59249 6.76819 7.28221 7.45537 7.95574 8.56044 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.002581 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.110663 B =10847.941987 C =11896.252484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.131 4.131 4 C 0.514 3.486 5 O -0.583 6.583 6 N -0.713 5.713 7 C 0.154 3.846 8 H 0.080 0.920 9 C -0.121 4.121 10 C -0.102 4.102 11 C -0.068 4.068 12 H 0.060 0.940 13 C 0.044 3.956 14 N -0.511 5.511 15 C 0.047 3.953 16 C 0.445 3.555 17 O -0.612 6.612 18 N -0.589 5.589 19 C -0.408 4.408 20 H 0.070 0.930 21 C -0.041 4.041 22 N -0.918 5.918 23 Si 1.133 2.867 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.272 1.272 27 C 0.033 3.967 28 C -0.071 4.071 29 H 0.070 0.930 30 C -0.106 4.106 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.407 0.593 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.110 0.890 47 H 0.384 0.616 48 H 0.260 0.740 49 H 0.062 0.938 50 H 0.091 0.909 51 H 0.085 0.915 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 18.166 13.995 22.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.138 4.138 3 C -0.188 4.188 4 C 0.302 3.698 5 O -0.463 6.463 6 N -0.365 5.365 7 C 0.050 3.950 8 H 0.098 0.902 9 C -0.159 4.159 10 C -0.140 4.140 11 C -0.087 4.087 12 H 0.079 0.921 13 C -0.084 4.084 14 N -0.234 5.234 15 C -0.085 4.085 16 C 0.232 3.768 17 O -0.497 6.497 18 N -0.228 5.228 19 C -0.537 4.537 20 H 0.088 0.912 21 C -0.240 4.240 22 N -0.557 5.557 23 Si 0.954 3.046 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.197 1.197 27 C -0.094 4.094 28 C -0.090 4.090 29 H 0.089 0.911 30 C -0.144 4.144 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.126 0.874 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.244 0.756 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.128 0.872 47 H 0.218 0.782 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.109 0.891 51 H 0.103 0.897 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.947 16.815 13.543 21.678 hybrid contribution -0.302 1.190 0.499 1.325 sum 1.645 18.005 14.042 22.892 Atomic orbital electron populations 1.21780 0.91404 1.03252 1.03355 1.21383 0.98778 0.97691 0.95941 1.21590 1.00823 0.93985 1.02423 1.21147 0.79040 0.81930 0.87717 1.90665 1.39812 1.67271 1.48570 1.46246 1.53034 1.11476 1.25758 1.20490 0.93438 0.93336 0.87721 0.90182 1.21737 0.96784 0.98744 0.98677 1.21044 0.99418 0.95124 0.98407 1.20744 0.96341 0.97514 0.94099 0.92097 1.23383 0.92072 0.96095 0.96873 1.65415 1.03440 1.44146 1.10441 1.21927 0.97841 0.97015 0.91699 1.20827 0.86055 0.86944 0.82943 1.90494 1.26440 1.56820 1.75972 1.41991 1.23694 1.37343 1.19806 1.20495 1.09964 1.19059 1.04179 0.91197 1.27750 0.94894 1.02883 0.98433 1.70939 1.19759 1.25881 1.39117 0.82618 0.75414 0.72938 0.73675 1.19577 1.20492 1.19686 1.23749 0.97286 0.94482 0.93908 1.20323 0.93183 0.97941 0.97566 0.91116 1.20543 1.00017 0.91779 1.02055 0.91244 0.92555 0.90096 0.87391 0.93478 0.90168 0.93075 0.75644 0.92664 0.89837 0.92371 0.92134 0.93133 0.93917 0.90848 0.87163 0.78165 0.92908 0.91988 0.89056 0.89669 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.09 71.98 0.65 -0.75 16 2 C -0.12 -1.61 3.26 -11.54 -0.04 -1.65 16 3 C -0.13 -1.95 8.48 71.98 0.61 -1.34 16 4 C 0.51 9.75 7.10 87.66 0.62 10.37 16 5 O -0.58 -15.76 15.65 -3.02 -0.05 -15.81 16 6 N -0.71 -10.64 3.71 -445.82 -1.66 -12.30 16 7 C 0.15 2.36 2.73 44.30 0.12 2.48 16 8 H 0.08 1.41 7.58 -2.38 -0.02 1.39 16 9 C -0.12 -2.10 5.67 30.48 0.17 -1.93 16 10 C -0.10 -1.99 5.26 29.91 0.16 -1.83 16 11 C -0.07 -1.49 2.93 -11.40 -0.03 -1.53 16 12 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 13 C 0.04 1.31 5.28 86.54 0.46 1.76 16 14 N -0.51 -15.40 5.10 -882.23 -4.50 -19.90 16 15 C 0.05 1.52 5.32 85.56 0.45 1.98 16 16 C 0.44 20.87 7.59 87.66 0.66 21.53 16 17 O -0.61 -34.08 14.42 -3.07 -0.04 -34.12 16 18 N -0.59 -29.59 5.28 -306.99 -1.62 -31.21 16 19 C -0.41 -23.25 9.68 84.04 0.81 -22.44 16 20 H 0.07 4.33 7.16 -2.91 -0.02 4.30 16 21 C -0.04 -2.24 5.50 84.93 0.47 -1.77 16 22 N -0.92 -50.67 13.68 21.66 0.30 -50.37 16 23 Si 1.13 48.54 29.92 68.60 2.05 50.60 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 C 0.03 0.64 5.70 86.53 0.49 1.13 16 28 C -0.07 -1.21 2.80 -12.02 -0.03 -1.24 16 29 H 0.07 1.25 8.06 -2.39 -0.02 1.24 16 30 C -0.11 -1.28 5.03 28.73 0.14 -1.13 16 31 H 0.07 0.57 7.56 -2.39 -0.02 0.55 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 0.83 8.10 -2.38 -0.02 0.81 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 38 H 0.41 4.83 7.90 -92.71 -0.73 4.10 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.19 6.47 -2.38 -0.02 1.17 16 43 H 0.05 1.98 6.91 -2.39 -0.02 1.97 16 44 H 0.04 1.19 7.26 -2.38 -0.02 1.17 16 45 H 0.07 2.02 7.90 -2.39 -0.02 2.00 16 46 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 47 H 0.38 17.57 6.73 -92.71 -0.62 16.94 16 48 H 0.26 13.80 6.78 -92.71 -0.63 13.18 16 49 H 0.06 0.94 7.68 -2.39 -0.02 0.92 16 50 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.08 0.84 7.17 -2.39 -0.02 0.82 16 52 H 0.09 0.89 8.11 -2.39 -0.02 0.87 16 Total: -1.00 -75.65 401.37 -0.08 -75.74 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -0.30 Total: 33.73 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 5.73 Total: 3.65 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -7.48 Total: -113.78 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.09 Total: -49.93 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.05 Total: 50.60 kcal Total: -75.65 -0.08 -75.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282939604.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.261 kcal (2) G-P(sol) polarization free energy of solvation -75.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds