Wall clock time and date at job start Tue Mar 31 2020 19:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47448 * 2 1 4 4 C 1.50699 * 109.47459 * 120.00045 * 2 1 3 5 5 O 1.21284 * 119.99742 * 359.97438 * 4 2 1 6 6 N 1.34780 * 120.00658 * 180.02562 * 4 2 1 7 7 C 1.46495 * 120.00087 * 180.02562 * 6 4 2 8 8 H 1.08991 * 108.96809 * 33.90446 * 7 6 4 9 9 C 1.52534 * 109.03697 * 274.99454 * 7 6 4 10 10 C 1.53836 * 111.64896 * 185.34241 * 9 7 6 11 11 C 1.51453 * 107.05393 * 57.22248 * 10 9 7 12 12 H 1.08995 * 109.86825 * 54.22285 * 11 10 9 13 13 C 1.52335 * 117.39358 * 181.17591 * 11 10 9 14 14 N 1.48655 * 105.83861 * 145.39439 * 13 11 10 15 15 C 1.46901 * 110.99844 * 118.88516 * 14 13 11 16 16 C 1.50696 * 109.47037 * 49.50348 * 15 14 13 17 17 O 1.21291 * 119.99976 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99843 * 179.97438 * 16 15 14 19 19 C 1.37097 * 119.99859 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99927 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00089 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00044 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99748 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47032 * 90.00345 * 23 21 19 25 25 H 1.48503 * 109.47077 * 209.99845 * 23 21 19 26 26 H 1.48502 * 109.47466 * 330.00489 * 23 21 19 27 27 C 1.49070 * 108.29418 * 356.79758 * 14 13 11 28 28 C 1.53071 * 103.41963 * 335.64676 * 27 14 13 29 29 H 1.09002 * 110.54256 * 284.34073 * 28 27 14 30 30 C 1.51622 * 116.62706 * 155.97081 * 28 27 14 31 31 H 1.09000 * 109.47158 * 300.00251 * 1 2 3 32 32 H 1.08997 * 109.47284 * 60.00158 * 1 2 3 33 33 H 1.08995 * 109.47344 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47586 * 239.99985 * 2 1 3 35 35 H 1.08994 * 109.47410 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.46749 * 300.00169 * 3 2 1 37 37 H 1.09004 * 109.46739 * 59.99467 * 3 2 1 38 38 H 0.97000 * 119.99233 * 359.97438 * 6 4 2 39 39 H 1.09006 * 109.04221 * 64.78560 * 9 7 6 40 40 H 1.09001 * 109.04364 * 305.90645 * 9 7 6 41 41 H 1.09000 * 109.93636 * 176.60331 * 10 9 7 42 42 H 1.09000 * 109.93572 * 297.83283 * 10 9 7 43 43 H 1.08997 * 110.18158 * 264.49222 * 13 11 10 44 44 H 1.09004 * 110.17672 * 26.30985 * 13 11 10 45 45 H 1.09004 * 109.46727 * 169.49882 * 15 14 13 46 46 H 1.08995 * 109.47152 * 289.49657 * 15 14 13 47 47 H 0.96999 * 120.00056 * 359.97438 * 18 16 15 48 48 H 0.97000 * 119.99789 * 179.97438 * 22 21 19 49 49 H 1.09000 * 110.63261 * 217.16189 * 27 14 13 50 50 H 1.09003 * 110.62919 * 94.12777 * 27 14 13 51 51 H 1.08994 * 109.94171 * 303.06883 * 30 28 27 52 52 H 1.09006 * 109.93729 * 64.31193 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2442 -1.1709 2.0290 6 7 3.3574 -0.8331 1.4440 7 6 3.8457 -1.5242 2.6399 8 1 3.1575 -2.3322 2.8879 9 6 3.8924 -0.5364 3.8012 10 6 4.5217 -1.1652 5.0562 11 6 5.9045 -1.6449 4.6669 12 1 6.4703 -0.8249 4.2249 13 6 6.7338 -2.3384 5.7402 14 7 7.5218 -3.3819 5.0330 15 6 8.9637 -3.1435 5.1815 16 6 9.2877 -2.9132 6.6351 17 8 8.4043 -2.9441 7.4656 18 7 10.5591 -2.6728 7.0122 19 6 10.8540 -2.4638 8.3347 20 1 10.0673 -2.4914 9.0742 21 6 12.1647 -2.2156 8.7235 22 7 12.4472 -2.0147 9.9910 23 14 13.5251 -2.1673 7.4443 24 1 13.6761 -0.7807 6.9344 25 1 14.8012 -2.6092 8.0619 26 1 13.1794 -3.0733 6.3196 27 6 7.1243 -3.3750 3.5963 28 6 5.7138 -2.7809 3.6208 29 1 4.9947 -3.5175 3.9793 30 6 5.2327 -2.1196 2.3440 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 3.9877 -0.4645 0.8055 39 1 2.8776 -0.2144 4.0353 40 1 4.4805 0.3325 3.5056 41 1 4.5963 -0.4197 5.8479 42 1 3.9172 -2.0073 5.3929 43 1 7.4020 -1.6232 6.2198 44 1 6.0803 -2.7988 6.4813 45 1 9.5146 -4.0116 4.8196 46 1 9.2483 -2.2652 4.6021 47 1 11.2657 -2.6485 6.3480 48 1 13.3622 -1.8418 10.2624 49 1 7.1070 -4.3894 3.1978 50 1 7.7967 -2.7442 3.0148 51 1 5.9227 -1.3278 2.0527 52 1 5.1572 -2.8600 1.5476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282939606.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:16 Heat of formation + Delta-G solvation = -76.734736 kcal Electronic energy + Delta-G solvation = -29760.908256 eV Core-core repulsion = 25759.648670 eV Total energy + Delta-G solvation = -4001.259586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.79016 -39.83238 -38.34943 -36.34703 -34.87044 -34.13094 -33.63992 -31.70770 -31.59325 -30.19855 -27.59790 -27.34935 -26.78978 -24.54230 -23.74193 -22.46993 -21.15954 -20.79171 -20.40555 -19.89141 -19.29807 -18.14427 -17.53787 -16.43296 -16.06772 -15.70971 -15.56966 -15.05461 -15.01482 -14.88588 -14.42624 -14.29717 -14.15707 -13.85118 -13.41116 -13.17598 -13.00090 -12.95091 -12.76652 -12.61552 -12.44857 -12.36148 -12.34358 -12.18361 -11.91462 -11.78571 -11.61705 -11.60495 -11.51780 -11.20868 -10.96771 -10.86290 -10.71355 -10.60934 -10.43191 -10.11734 -9.98571 -9.93557 -9.52754 -9.30301 -8.42772 -8.17238 -7.99759 -6.32217 -3.83552 2.34970 2.82438 3.01652 3.05268 3.13891 3.72147 4.02954 4.09352 4.22753 4.25631 4.38738 4.43744 4.51096 4.68874 4.73928 4.86473 4.91451 5.07038 5.14410 5.15635 5.20736 5.23181 5.24763 5.27095 5.36483 5.39971 5.43658 5.48830 5.49958 5.60191 5.67159 5.67397 5.76703 5.79845 5.84463 5.84932 5.91125 5.95356 6.00106 6.07038 6.10608 6.24687 6.25947 6.43986 6.66661 7.17850 7.20268 7.24003 7.57570 7.93724 8.13139 8.58547 8.93721 9.41173 9.81103 10.80837 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028046 B = 0.001952 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.137099 B =14338.965485 C =14436.780243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C -0.144 4.144 4 C 0.515 3.485 5 O -0.538 6.538 6 N -0.728 5.728 7 C 0.147 3.853 8 H 0.087 0.913 9 C -0.126 4.126 10 C -0.099 4.099 11 C -0.121 4.121 12 H 0.068 0.932 13 C 0.068 3.932 14 N -0.509 5.509 15 C 0.036 3.964 16 C 0.449 3.551 17 O -0.560 6.560 18 N -0.590 5.590 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.050 3.950 28 C -0.100 4.100 29 H 0.088 0.912 30 C -0.108 4.108 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.398 0.602 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.047 0.953 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.079 0.921 50 H 0.046 0.954 51 H 0.069 0.931 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.318 5.070 -25.120 30.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.137 4.137 3 C -0.202 4.202 4 C 0.301 3.699 5 O -0.414 6.414 6 N -0.379 5.379 7 C 0.043 3.957 8 H 0.105 0.895 9 C -0.164 4.164 10 C -0.138 4.138 11 C -0.141 4.141 12 H 0.086 0.914 13 C -0.059 4.059 14 N -0.233 5.233 15 C -0.095 4.095 16 C 0.235 3.765 17 O -0.442 6.442 18 N -0.229 5.229 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.078 4.078 28 C -0.119 4.119 29 H 0.107 0.893 30 C -0.147 4.147 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.232 0.768 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.065 0.935 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.098 0.902 50 H 0.064 0.936 51 H 0.087 0.913 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.418 4.262 -23.561 29.609 hybrid contribution 1.961 1.042 -1.573 2.721 sum -15.457 5.304 -25.134 29.980 Atomic orbital electron populations 1.21610 0.92448 1.02883 1.02130 1.21324 0.98491 0.97287 0.96648 1.21793 1.01142 0.94208 1.03054 1.20730 0.82237 0.79347 0.87568 1.90713 1.55279 1.48256 1.47151 1.46180 1.07090 1.59118 1.25499 1.21062 0.95453 0.94883 0.84350 0.89484 1.21913 1.01428 0.98339 0.94745 1.21226 0.95009 1.00909 0.96646 1.22316 0.96642 0.97480 0.97664 0.91388 1.22509 0.95967 0.92693 0.94745 1.64169 1.03186 1.47246 1.08674 1.22104 0.90455 1.00759 0.96230 1.19664 0.83369 0.83909 0.89600 1.90575 1.45837 1.54753 1.53082 1.42216 1.07032 1.64713 1.08938 1.19432 0.95699 1.45544 0.82659 0.86252 1.25039 0.97316 0.97570 0.96229 1.69620 1.20383 1.47414 1.14646 0.86678 0.82578 0.78791 0.81387 1.19692 1.20147 1.19459 1.22830 0.94611 1.00619 0.89713 1.21963 0.97445 0.97484 0.95051 0.89331 1.21577 0.95250 0.99922 0.97931 0.91893 0.92071 0.91940 0.88609 0.92174 0.91351 0.91973 0.76768 0.91580 0.92140 0.91220 0.91208 0.90896 0.90048 0.89240 0.93504 0.79716 0.91613 0.90242 0.93613 0.91270 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 8.48 37.15 0.32 -0.56 16 2 C -0.12 -0.69 3.26 -91.77 -0.30 -0.99 16 3 C -0.14 -0.65 9.09 37.16 0.34 -0.31 16 4 C 0.51 4.71 7.11 -10.98 -0.08 4.63 16 5 O -0.54 -7.23 15.61 5.55 0.09 -7.14 16 6 N -0.73 -5.34 4.93 -53.63 -0.26 -5.60 16 7 C 0.15 1.31 2.45 -67.75 -0.17 1.14 16 8 H 0.09 0.96 7.51 -51.93 -0.39 0.57 16 9 C -0.13 -1.23 5.37 -26.53 -0.14 -1.37 16 10 C -0.10 -1.10 5.70 -27.08 -0.15 -1.26 16 11 C -0.12 -1.47 2.30 -90.36 -0.21 -1.67 16 12 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 13 C 0.07 1.11 4.77 -3.19 -0.02 1.10 16 14 N -0.51 -8.15 5.26 -233.03 -1.23 -9.38 16 15 C 0.04 0.61 5.59 -4.98 -0.03 0.59 16 16 C 0.45 10.12 7.05 -10.99 -0.08 10.04 16 17 O -0.56 -14.69 13.42 5.55 0.07 -14.62 16 18 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 19 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 20 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.67 13.96 55.50 0.77 -24.89 16 23 Si 0.88 19.27 27.74 -169.99 -4.71 14.56 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 27 C 0.05 0.58 6.36 -2.58 -0.02 0.57 16 28 C -0.10 -1.04 2.48 -89.90 -0.22 -1.27 16 29 H 0.09 1.00 8.04 -51.93 -0.42 0.58 16 30 C -0.11 -0.86 5.16 -27.01 -0.14 -0.99 16 31 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.40 1.87 8.03 -40.82 -0.33 1.54 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 43 H 0.07 1.40 5.96 -51.93 -0.31 1.09 16 44 H 0.08 1.48 8.05 -51.93 -0.42 1.06 16 45 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.05 0.69 7.85 -51.93 -0.41 0.29 16 47 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 48 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 51 H 0.07 0.50 7.98 -51.93 -0.41 0.08 16 52 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 401.27 15.07 6.05 6.05 Total: -1.00 -33.82 401.27 -9.58 -43.40 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -9.16 Total: 9.71 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.14 Total: 1.96 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.77 Total: -53.91 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.16 Total: -21.76 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.71 Total: 14.56 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.82 -9.58 -43.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282939606.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.332 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds