Wall clock time and date at job start Tue Mar 31 2020 19:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47448 * 2 1 4 4 C 1.50699 * 109.47459 * 120.00045 * 2 1 3 5 5 O 1.21284 * 119.99742 * 359.97438 * 4 2 1 6 6 N 1.34780 * 120.00658 * 180.02562 * 4 2 1 7 7 C 1.46495 * 120.00087 * 180.02562 * 6 4 2 8 8 H 1.08991 * 108.96809 * 33.90446 * 7 6 4 9 9 C 1.52534 * 109.03697 * 274.99454 * 7 6 4 10 10 C 1.53836 * 111.64896 * 185.34241 * 9 7 6 11 11 C 1.51453 * 107.05393 * 57.22248 * 10 9 7 12 12 H 1.08995 * 109.86825 * 54.22285 * 11 10 9 13 13 C 1.52335 * 117.39358 * 181.17591 * 11 10 9 14 14 N 1.48655 * 105.83861 * 145.39439 * 13 11 10 15 15 C 1.46901 * 110.99844 * 118.88516 * 14 13 11 16 16 C 1.50696 * 109.47037 * 49.50348 * 15 14 13 17 17 O 1.21291 * 119.99976 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99843 * 179.97438 * 16 15 14 19 19 C 1.37097 * 119.99859 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99927 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00089 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00044 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99748 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47032 * 90.00345 * 23 21 19 25 25 H 1.48503 * 109.47077 * 209.99845 * 23 21 19 26 26 H 1.48502 * 109.47466 * 330.00489 * 23 21 19 27 27 C 1.49070 * 108.29418 * 356.79758 * 14 13 11 28 28 C 1.53071 * 103.41963 * 335.64676 * 27 14 13 29 29 H 1.09002 * 110.54256 * 284.34073 * 28 27 14 30 30 C 1.51622 * 116.62706 * 155.97081 * 28 27 14 31 31 H 1.09000 * 109.47158 * 300.00251 * 1 2 3 32 32 H 1.08997 * 109.47284 * 60.00158 * 1 2 3 33 33 H 1.08995 * 109.47344 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47586 * 239.99985 * 2 1 3 35 35 H 1.08994 * 109.47410 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.46749 * 300.00169 * 3 2 1 37 37 H 1.09004 * 109.46739 * 59.99467 * 3 2 1 38 38 H 0.97000 * 119.99233 * 359.97438 * 6 4 2 39 39 H 1.09006 * 109.04221 * 64.78560 * 9 7 6 40 40 H 1.09001 * 109.04364 * 305.90645 * 9 7 6 41 41 H 1.09000 * 109.93636 * 176.60331 * 10 9 7 42 42 H 1.09000 * 109.93572 * 297.83283 * 10 9 7 43 43 H 1.08997 * 110.18158 * 264.49222 * 13 11 10 44 44 H 1.09004 * 110.17672 * 26.30985 * 13 11 10 45 45 H 1.09004 * 109.46727 * 169.49882 * 15 14 13 46 46 H 1.08995 * 109.47152 * 289.49657 * 15 14 13 47 47 H 0.96999 * 120.00056 * 359.97438 * 18 16 15 48 48 H 0.97000 * 119.99789 * 179.97438 * 22 21 19 49 49 H 1.09000 * 110.63261 * 217.16189 * 27 14 13 50 50 H 1.09003 * 110.62919 * 94.12777 * 27 14 13 51 51 H 1.08994 * 109.94171 * 303.06883 * 30 28 27 52 52 H 1.09006 * 109.93729 * 64.31193 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2442 -1.1709 2.0290 6 7 3.3574 -0.8331 1.4440 7 6 3.8457 -1.5242 2.6399 8 1 3.1575 -2.3322 2.8879 9 6 3.8924 -0.5364 3.8012 10 6 4.5217 -1.1652 5.0562 11 6 5.9045 -1.6449 4.6669 12 1 6.4703 -0.8249 4.2249 13 6 6.7338 -2.3384 5.7402 14 7 7.5218 -3.3819 5.0330 15 6 8.9637 -3.1435 5.1815 16 6 9.2877 -2.9132 6.6351 17 8 8.4043 -2.9441 7.4656 18 7 10.5591 -2.6728 7.0122 19 6 10.8540 -2.4638 8.3347 20 1 10.0673 -2.4914 9.0742 21 6 12.1647 -2.2156 8.7235 22 7 12.4472 -2.0147 9.9910 23 14 13.5251 -2.1673 7.4443 24 1 13.6761 -0.7807 6.9344 25 1 14.8012 -2.6092 8.0619 26 1 13.1794 -3.0733 6.3196 27 6 7.1243 -3.3750 3.5963 28 6 5.7138 -2.7809 3.6208 29 1 4.9947 -3.5175 3.9793 30 6 5.2327 -2.1196 2.3440 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 3.9877 -0.4645 0.8055 39 1 2.8776 -0.2144 4.0353 40 1 4.4805 0.3325 3.5056 41 1 4.5963 -0.4197 5.8479 42 1 3.9172 -2.0073 5.3929 43 1 7.4020 -1.6232 6.2198 44 1 6.0803 -2.7988 6.4813 45 1 9.5146 -4.0116 4.8196 46 1 9.2483 -2.2652 4.6021 47 1 11.2657 -2.6485 6.3480 48 1 13.3622 -1.8418 10.2624 49 1 7.1070 -4.3894 3.1978 50 1 7.7967 -2.7442 3.0148 51 1 5.9227 -1.3278 2.0527 52 1 5.1572 -2.8600 1.5476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282939606.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:15 Heat of formation + Delta-G solvation = -102.901739 kcal Electronic energy + Delta-G solvation = -29762.042943 eV Core-core repulsion = 25759.648670 eV Total energy + Delta-G solvation = -4002.394272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.69251 -40.84155 -39.90981 -37.40300 -35.98878 -35.45541 -34.65182 -33.76808 -32.51953 -31.24868 -28.55808 -28.22089 -27.78418 -26.15702 -24.49239 -23.57091 -21.98937 -21.73826 -21.39421 -21.21408 -20.62161 -19.99446 -18.16981 -17.74454 -17.14734 -16.82238 -16.75088 -16.34582 -16.22587 -15.83070 -15.61947 -15.44955 -15.03540 -14.87994 -14.66734 -14.51786 -14.19411 -13.97892 -13.79646 -13.73338 -13.48557 -13.38232 -13.16880 -13.13325 -12.94523 -12.85343 -12.77793 -12.53195 -12.42172 -12.04962 -11.98893 -11.98381 -11.89267 -11.86826 -11.72002 -11.51723 -11.33728 -10.98839 -10.68435 -10.31295 -10.19737 -10.02993 -9.20429 -8.41773 -6.02771 1.29968 1.35074 1.44562 1.67033 1.94454 2.18700 2.22815 2.71206 3.13787 3.16065 3.45914 3.57010 3.68325 3.80107 3.94961 4.00758 4.08419 4.15534 4.22393 4.29613 4.37123 4.38898 4.44695 4.50502 4.53101 4.54284 4.57835 4.61835 4.76722 4.77885 4.85206 4.91571 4.93833 4.99558 5.05159 5.06745 5.10468 5.13918 5.18421 5.30256 5.32648 5.33660 5.34629 5.49998 5.52962 5.56581 5.90255 5.97482 6.13111 6.59106 6.60647 6.87495 7.31525 7.38610 7.95523 8.75894 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028046 B = 0.001952 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.137099 B =14338.965485 C =14436.780243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.509 3.491 5 O -0.589 6.589 6 N -0.713 5.713 7 C 0.150 3.850 8 H 0.061 0.939 9 C -0.115 4.115 10 C -0.098 4.098 11 C -0.113 4.113 12 H 0.082 0.918 13 C 0.073 3.927 14 N -0.533 5.533 15 C 0.049 3.951 16 C 0.446 3.554 17 O -0.607 6.607 18 N -0.590 5.590 19 C -0.328 4.328 20 H 0.053 0.947 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.256 1.256 25 H -0.275 1.275 26 H -0.230 1.230 27 C 0.053 3.947 28 C -0.090 4.090 29 H 0.074 0.926 30 C -0.094 4.094 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.123 0.877 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.416 0.584 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.045 0.955 45 H 0.119 0.881 46 H 0.081 0.919 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.094 0.906 50 H 0.072 0.928 51 H 0.091 0.909 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.404 5.601 -30.983 34.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 C -0.199 4.199 4 C 0.297 3.703 5 O -0.469 6.469 6 N -0.364 5.364 7 C 0.045 3.955 8 H 0.080 0.920 9 C -0.154 4.154 10 C -0.137 4.137 11 C -0.132 4.132 12 H 0.100 0.900 13 C -0.054 4.054 14 N -0.258 5.258 15 C -0.082 4.082 16 C 0.234 3.766 17 O -0.491 6.491 18 N -0.232 5.232 19 C -0.457 4.457 20 H 0.071 0.929 21 C -0.215 4.215 22 N -0.575 5.575 23 Si 0.786 3.214 24 H -0.180 1.180 25 H -0.201 1.201 26 H -0.153 1.153 27 C -0.073 4.073 28 C -0.109 4.109 29 H 0.092 0.908 30 C -0.132 4.132 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.141 0.859 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.254 0.746 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.137 0.863 46 H 0.099 0.901 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.113 0.887 50 H 0.090 0.910 51 H 0.110 0.890 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.496 4.799 -29.482 33.650 hybrid contribution 1.210 0.854 0.400 1.534 sum -14.286 5.653 -29.082 32.891 Atomic orbital electron populations 1.21622 0.93325 1.01937 1.02293 1.21369 0.97757 0.98176 0.95781 1.21802 1.02127 0.92834 1.03128 1.21405 0.82294 0.78664 0.87977 1.90699 1.56633 1.50506 1.49110 1.46014 1.06987 1.58331 1.25097 1.20889 0.95908 0.94013 0.84644 0.92038 1.21797 1.00316 0.98933 0.94363 1.21185 0.94827 1.00339 0.97367 1.22170 0.96156 0.98227 0.96669 0.89988 1.22221 0.95507 0.92183 0.95513 1.64122 1.02690 1.47226 1.11766 1.22062 0.91347 1.03409 0.91387 1.20928 0.82274 0.81263 0.92135 1.90569 1.47234 1.55892 1.55450 1.42025 1.08215 1.65482 1.07462 1.18987 0.94942 1.47884 0.83924 0.92850 1.26140 1.00200 0.95969 0.99154 1.69809 1.21569 1.48380 1.17777 0.85353 0.77202 0.80288 0.78602 1.18042 1.20052 1.15350 1.22948 0.95166 1.02240 0.86992 1.21894 0.96929 0.96347 0.95748 0.90790 1.21493 0.94265 1.00714 0.96762 0.93899 0.89684 0.93474 0.85904 0.90579 0.89606 0.93607 0.74628 0.93425 0.90676 0.92167 0.92471 0.94513 0.93618 0.86317 0.90146 0.77471 0.91156 0.88730 0.90994 0.89010 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.48 71.98 0.61 -1.03 16 2 C -0.11 -1.05 3.26 -11.54 -0.04 -1.08 16 3 C -0.14 -0.85 9.09 71.98 0.65 -0.19 16 4 C 0.51 8.65 7.11 87.66 0.62 9.28 16 5 O -0.59 -16.21 15.61 -3.04 -0.05 -16.25 16 6 N -0.71 -8.56 4.93 -441.98 -2.18 -10.74 16 7 C 0.15 2.41 2.45 45.11 0.11 2.52 16 8 H 0.06 1.35 7.51 -2.39 -0.02 1.33 16 9 C -0.12 -2.17 5.37 30.72 0.16 -2.01 16 10 C -0.10 -2.25 5.70 30.37 0.17 -2.08 16 11 C -0.11 -2.62 2.30 -10.62 -0.02 -2.65 16 12 H 0.08 1.73 7.92 -2.39 -0.02 1.71 16 13 C 0.07 2.49 4.77 85.74 0.41 2.89 16 14 N -0.53 -16.30 5.26 -891.16 -4.69 -20.99 16 15 C 0.05 1.52 5.59 85.56 0.48 2.00 16 16 C 0.45 20.31 7.05 87.66 0.62 20.93 16 17 O -0.61 -33.82 13.42 -3.06 -0.04 -33.86 16 18 N -0.59 -27.92 5.09 -306.99 -1.56 -29.48 16 19 C -0.33 -19.34 10.16 84.04 0.85 -18.49 16 20 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 21 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 22 N -0.93 -56.64 13.96 21.66 0.30 -56.34 16 23 Si 0.97 38.57 27.74 68.60 1.90 40.47 16 24 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 25 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 26 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 27 C 0.05 1.03 6.36 85.91 0.55 1.58 16 28 C -0.09 -1.65 2.48 -10.33 -0.03 -1.68 16 29 H 0.07 1.61 8.04 -2.39 -0.02 1.59 16 30 C -0.09 -1.11 5.16 30.42 0.16 -0.95 16 31 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 34 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.08 0.22 7.56 -2.39 -0.02 0.20 16 36 H 0.09 0.25 8.14 -2.39 -0.02 0.24 16 37 H 0.04 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.42 2.08 8.03 -92.71 -0.74 1.34 16 39 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.43 8.04 -2.39 -0.02 1.41 16 43 H 0.04 1.48 5.96 -2.39 -0.01 1.47 16 44 H 0.05 1.82 8.05 -2.38 -0.02 1.80 16 45 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 46 H 0.08 2.00 7.85 -2.39 -0.02 1.98 16 47 H 0.39 15.14 5.76 -92.71 -0.53 14.61 16 48 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 49 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 51 H 0.09 0.77 7.98 -2.39 -0.02 0.75 16 52 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -83.92 401.27 -0.96 -84.88 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.42 Total: 33.70 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 5.78 Total: 8.61 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -8.13 Total: -117.55 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -0.09 Total: -50.12 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.90 Total: 40.47 kcal Total: -83.92 -0.96 -84.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282939606.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.025 kcal (2) G-P(sol) polarization free energy of solvation -83.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds