Wall clock time and date at job start Tue Mar 31 2020 20:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47081 * 2 1 4 4 H 1.08991 * 109.47008 * 304.99891 * 3 2 1 5 5 N 1.46508 * 109.46594 * 64.99900 * 3 2 1 6 6 C 1.34773 * 119.99765 * 274.99569 * 5 3 2 7 7 C 1.50706 * 120.00064 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00378 * 0.02562 * 6 5 3 9 9 C 1.50700 * 109.47121 * 184.99486 * 3 2 1 10 10 O 1.21285 * 120.00036 * 240.00016 * 9 3 2 11 11 N 1.34777 * 119.99757 * 60.00468 * 9 3 2 12 12 C 1.47203 * 126.70464 * 359.68256 * 11 9 3 13 13 C 1.54036 * 106.26552 * 148.63037 * 12 11 9 14 14 C 1.53000 * 112.77036 * 141.68571 * 13 12 11 15 15 C 1.54311 * 109.25073 * 267.02221 * 13 12 11 16 16 N 1.48110 * 104.71229 * 136.29828 * 15 13 12 17 17 C 1.36945 * 127.84202 * 140.23690 * 16 15 13 18 18 H 1.08001 * 120.00162 * 344.49380 * 17 16 15 19 19 C 1.38816 * 119.99412 * 164.49641 * 17 16 15 20 20 N 1.31615 * 120.00360 * 350.61093 * 19 17 16 21 21 Si 1.86800 * 119.99611 * 170.61846 * 19 17 16 22 22 H 1.48500 * 109.47543 * 59.99374 * 21 19 17 23 23 H 1.48499 * 109.47192 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46983 * 299.99457 * 21 19 17 25 25 C 1.49974 * 104.93996 * 320.71425 * 16 15 13 26 26 C 1.54320 * 103.81325 * 38.69632 * 25 16 15 27 27 C 1.52998 * 112.07530 * 99.66772 * 26 25 16 28 28 C 1.47202 * 126.70213 * 179.97438 * 11 9 3 29 29 H 1.08998 * 109.46945 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47319 * 299.99703 * 1 2 3 31 31 H 1.09002 * 109.46944 * 59.99924 * 1 2 3 32 32 H 1.08997 * 109.47319 * 240.00297 * 2 1 3 33 33 H 1.09005 * 109.46793 * 119.99564 * 2 1 3 34 34 H 0.96992 * 119.99881 * 95.00657 * 5 3 2 35 35 H 1.08998 * 109.47091 * 89.99724 * 7 6 5 36 36 H 1.08994 * 109.46888 * 210.00349 * 7 6 5 37 37 H 1.08999 * 109.46491 * 329.99842 * 7 6 5 38 38 H 1.09001 * 110.06944 * 267.94523 * 12 11 9 39 39 H 1.09005 * 110.06845 * 29.46957 * 12 11 9 40 40 H 1.09001 * 109.46987 * 301.37829 * 14 13 12 41 41 H 1.08995 * 109.47276 * 61.38141 * 14 13 12 42 42 H 1.09005 * 109.46998 * 181.38145 * 14 13 12 43 43 H 1.09003 * 110.38649 * 255.10670 * 15 13 12 44 44 H 1.08997 * 110.39028 * 17.49156 * 15 13 12 45 45 H 0.97004 * 119.99985 * 180.02562 * 20 19 17 46 46 H 1.09000 * 110.28721 * 280.44449 * 25 16 15 47 47 H 1.09001 * 111.35538 * 157.46980 * 25 16 15 48 48 H 1.08995 * 109.47270 * 182.01170 * 27 26 25 49 49 H 1.09003 * 109.46856 * 302.01243 * 27 26 25 50 50 H 1.08998 * 109.47252 * 62.00959 * 27 26 25 51 51 H 1.08996 * 110.07211 * 330.53121 * 28 11 9 52 52 H 1.09007 * 110.06645 * 92.00518 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0975 1.2519 6 6 0.4351 2.6644 1.3670 7 6 0.0365 3.3386 2.6545 8 8 -0.3396 2.6320 0.4344 9 6 3.5419 1.4444 -0.1237 10 8 4.2216 1.9437 0.7479 11 7 4.1298 0.8912 -1.2030 12 6 3.4530 0.2431 -2.3382 13 6 4.3397 0.4978 -3.5718 14 6 4.4018 -0.7053 -4.5149 15 6 3.8560 1.7744 -4.2912 16 7 5.0967 2.5122 -4.6228 17 6 5.3819 3.2035 -5.7701 18 1 4.7804 3.0537 -6.6545 19 6 6.4440 4.0969 -5.7961 20 7 7.0602 4.4195 -4.6787 21 14 6.9987 4.8414 -7.4170 22 1 5.8758 5.6012 -8.0228 23 1 8.1422 5.7574 -7.1755 24 1 7.4187 3.7577 -8.3414 25 6 5.9861 2.3293 -3.4292 26 6 5.7337 0.8680 -3.0021 27 6 6.8307 -0.0746 -3.5010 28 6 5.5745 0.8119 -1.4740 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.2718 2.1232 1.9978 35 1 0.3215 4.3900 2.6175 36 1 -1.0424 3.2590 2.7874 37 1 0.5421 2.8542 3.4898 38 1 3.3595 -0.8275 -2.1563 39 1 2.4677 0.6849 -2.4880 40 1 4.7878 -1.5703 -3.9755 41 1 3.4019 -0.9264 -4.8882 42 1 5.0601 -0.4764 -5.3530 43 1 3.3136 1.5154 -5.2005 44 1 3.2266 2.3684 -3.6286 45 1 7.8022 5.0441 -4.6969 46 1 5.6948 3.0135 -2.6324 47 1 7.0347 2.4729 -3.6898 48 1 6.5926 -1.0969 -3.2073 49 1 6.8950 -0.0143 -4.5875 50 1 7.7859 0.2159 -3.0638 51 1 6.0884 1.6554 -1.0132 52 1 5.9762 -0.1257 -1.0897 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282992485.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:55 Heat of formation + Delta-G solvation = -41.904374 kcal Electronic energy + Delta-G solvation = -31869.887985 eV Core-core repulsion = 27870.138757 eV Total energy + Delta-G solvation = -3999.749228 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.88742 -39.86247 -38.42944 -35.45400 -34.96380 -33.10255 -32.54030 -31.74030 -30.61340 -29.88842 -27.93846 -26.69427 -25.87949 -25.22715 -24.81383 -22.53631 -21.78364 -20.59021 -20.15850 -19.59782 -18.03181 -17.48886 -16.79778 -16.49146 -16.10393 -15.81302 -15.44120 -14.98564 -14.63607 -14.40798 -14.13995 -13.94019 -13.81242 -13.51384 -13.36170 -13.15607 -13.01515 -12.76679 -12.58478 -12.32650 -12.08295 -12.00969 -11.96271 -11.74296 -11.61849 -11.58397 -11.39839 -11.31152 -11.01441 -10.82490 -10.82122 -10.70401 -10.12061 -10.00057 -9.97920 -9.92473 -9.79257 -9.73393 -9.52976 -9.16575 -8.65325 -8.51478 -6.84547 -5.78158 -3.12264 2.47815 2.63072 2.75808 3.33922 3.38420 3.43312 3.44339 4.32828 4.45339 4.66879 4.74744 4.76762 4.88694 4.91234 5.02035 5.11884 5.21411 5.26773 5.37284 5.40509 5.50764 5.51928 5.56020 5.60938 5.63063 5.68329 5.74590 5.81464 5.83163 5.90489 5.94667 6.03816 6.06450 6.15086 6.22002 6.27054 6.29210 6.38097 6.44482 6.47504 6.62024 6.70348 6.80050 6.91275 7.32134 7.38544 7.53450 7.62639 7.71170 8.07987 8.16123 8.17989 9.09173 9.74444 10.51113 11.35850 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014100 B = 0.003436 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.365346 B = 8146.054280 C = 8775.723971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.131 3.869 4 H 0.114 0.886 5 N -0.711 5.711 6 C 0.512 3.488 7 C -0.171 4.171 8 O -0.542 6.542 9 C 0.530 3.470 10 O -0.543 6.543 11 N -0.602 5.602 12 C 0.109 3.891 13 C -0.084 4.084 14 C -0.121 4.121 15 C 0.142 3.858 16 N -0.594 5.594 17 C -0.227 4.227 18 H 0.074 0.926 19 C -0.004 4.004 20 N -0.914 5.914 21 Si 0.909 3.091 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.175 3.825 26 C -0.092 4.092 27 C -0.119 4.119 28 C 0.119 3.881 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.409 0.591 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.048 0.952 44 H 0.019 0.981 45 H 0.254 0.746 46 H 0.023 0.977 47 H 0.086 0.914 48 H 0.046 0.954 49 H 0.066 0.934 50 H 0.051 0.949 51 H 0.081 0.919 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.416 -11.862 11.777 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.022 3.978 4 H 0.132 0.868 5 N -0.365 5.365 6 C 0.300 3.700 7 C -0.231 4.231 8 O -0.419 6.419 9 C 0.317 3.683 10 O -0.421 6.421 11 N -0.334 5.334 12 C -0.014 4.014 13 C -0.086 4.086 14 C -0.178 4.178 15 C 0.015 3.985 16 N -0.318 5.318 17 C -0.356 4.356 18 H 0.092 0.908 19 C -0.201 4.201 20 N -0.561 5.561 21 Si 0.740 3.260 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.050 3.950 26 C -0.095 4.095 27 C -0.176 4.176 28 C -0.004 4.004 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.246 0.754 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.041 0.959 47 H 0.105 0.895 48 H 0.065 0.935 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.100 0.900 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.495 -11.351 11.552 18.774 hybrid contribution 0.664 0.584 -0.436 0.986 sum -8.831 -10.767 11.116 17.818 Atomic orbital electron populations 1.21789 0.93982 1.00853 1.03287 1.22035 0.97765 0.94139 1.03371 1.20786 0.91505 0.95653 0.89860 0.86794 1.45831 1.17078 1.57602 1.16038 1.20756 0.81102 0.77820 0.90354 1.21867 1.04099 1.02282 0.94816 1.90740 1.51321 1.58813 1.41051 1.20093 0.89600 0.77533 0.81051 1.90684 1.65259 1.45981 1.40138 1.48289 1.08618 1.56613 1.19877 1.22363 0.96744 0.96797 0.85536 1.22390 0.94691 0.97585 0.93942 1.21619 1.01425 0.95638 0.99140 1.21685 0.90325 0.90085 0.96416 1.45298 1.10680 1.59628 1.16191 1.18937 1.12804 1.16203 0.87622 0.90816 1.24859 1.00209 0.98030 0.96992 1.69893 1.24822 1.36780 1.24559 0.86248 0.78078 0.78738 0.82969 1.21085 1.21616 1.21129 1.21931 0.97774 0.86977 0.88299 1.22528 0.94433 1.00661 0.91850 1.21610 0.97033 0.96947 1.02049 1.22146 0.80359 1.01661 0.96211 0.93167 0.92470 0.91791 0.89903 0.91413 0.75401 0.88689 0.88862 0.90185 0.91365 0.90438 0.92992 0.93114 0.91263 0.93336 0.96330 0.93580 0.95946 0.89527 0.93514 0.91467 0.92955 0.90035 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.51 37.16 0.32 -1.19 16 2 C -0.13 -1.41 5.41 -26.73 -0.14 -1.55 16 3 C 0.13 1.69 1.99 -69.07 -0.14 1.55 16 4 H 0.11 1.66 7.30 -51.93 -0.38 1.28 16 5 N -0.71 -8.29 4.90 -54.93 -0.27 -8.56 16 6 C 0.51 5.97 6.51 -10.98 -0.07 5.90 16 7 C -0.17 -1.27 10.30 36.01 0.37 -0.90 16 8 O -0.54 -8.18 14.24 5.56 0.08 -8.10 16 9 C 0.53 8.21 7.31 -10.99 -0.08 8.13 16 10 O -0.54 -9.85 16.07 5.55 0.09 -9.76 16 11 N -0.60 -9.08 3.31 -171.46 -0.57 -9.65 16 12 C 0.11 1.43 4.14 -3.12 -0.01 1.41 16 13 C -0.08 -1.30 1.08 -152.19 -0.16 -1.47 16 14 C -0.12 -1.60 7.53 37.16 0.28 -1.32 16 15 C 0.14 2.81 6.32 -2.47 -0.02 2.79 16 16 N -0.59 -14.58 3.41 -167.44 -0.57 -15.15 16 17 C -0.23 -6.18 10.35 -15.05 -0.16 -6.33 16 18 H 0.07 1.94 7.85 -52.49 -0.41 1.53 16 19 C 0.00 -0.10 5.40 -17.43 -0.09 -0.19 16 20 N -0.91 -26.59 10.87 55.49 0.60 -25.99 16 21 Si 0.91 21.78 29.56 -169.99 -5.03 16.76 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.18 4.05 5.02 -1.41 -0.01 4.05 16 26 C -0.09 -1.59 1.06 -152.34 -0.16 -1.75 16 27 C -0.12 -1.82 7.45 37.16 0.28 -1.54 16 28 C 0.12 1.91 5.94 -3.28 -0.02 1.89 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.65 5.64 -51.93 -0.29 0.36 16 31 H 0.06 0.76 7.85 -51.93 -0.41 0.35 16 32 H 0.08 0.80 5.06 -51.93 -0.26 0.54 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.41 4.34 7.79 -40.82 -0.32 4.03 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.73 7.25 -51.93 -0.38 0.36 16 39 H 0.08 0.97 6.43 -51.93 -0.33 0.64 16 40 H 0.05 0.59 7.09 -51.93 -0.37 0.22 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.05 7.17 -51.93 -0.37 0.68 16 43 H 0.05 0.92 7.90 -51.93 -0.41 0.51 16 44 H 0.02 0.39 7.55 -51.93 -0.39 0.00 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.02 0.58 7.51 -51.93 -0.39 0.19 16 47 H 0.09 2.24 6.37 -51.93 -0.33 1.91 16 48 H 0.05 0.59 7.10 -51.93 -0.37 0.22 16 49 H 0.07 1.13 7.16 -51.93 -0.37 0.76 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.08 1.49 7.34 -51.93 -0.38 1.11 16 52 H 0.06 0.85 7.88 -51.92 -0.41 0.45 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -32.86 391.55 -8.25 -41.11 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -8.67 Total: 3.97 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 0.18 Total: 9.47 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.81 Total: -59.35 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.17 Total: -17.87 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.86 -8.25 -41.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282992485.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.793 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds