Wall clock time and date at job start Tue Mar 31 2020 20:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47081 * 2 1 4 4 H 1.08991 * 109.47008 * 304.99891 * 3 2 1 5 5 N 1.46508 * 109.46594 * 64.99900 * 3 2 1 6 6 C 1.34773 * 119.99765 * 274.99569 * 5 3 2 7 7 C 1.50706 * 120.00064 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00378 * 0.02562 * 6 5 3 9 9 C 1.50700 * 109.47121 * 184.99486 * 3 2 1 10 10 O 1.21285 * 120.00036 * 240.00016 * 9 3 2 11 11 N 1.34777 * 119.99757 * 60.00468 * 9 3 2 12 12 C 1.47203 * 126.70464 * 359.68256 * 11 9 3 13 13 C 1.54036 * 106.26552 * 148.63037 * 12 11 9 14 14 C 1.53000 * 112.77036 * 141.68571 * 13 12 11 15 15 C 1.54311 * 109.25073 * 267.02221 * 13 12 11 16 16 N 1.48110 * 104.71229 * 136.29828 * 15 13 12 17 17 C 1.36945 * 127.84202 * 140.23690 * 16 15 13 18 18 H 1.08001 * 120.00162 * 344.49380 * 17 16 15 19 19 C 1.38816 * 119.99412 * 164.49641 * 17 16 15 20 20 N 1.31615 * 120.00360 * 350.61093 * 19 17 16 21 21 Si 1.86800 * 119.99611 * 170.61846 * 19 17 16 22 22 H 1.48500 * 109.47543 * 59.99374 * 21 19 17 23 23 H 1.48499 * 109.47192 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46983 * 299.99457 * 21 19 17 25 25 C 1.49974 * 104.93996 * 320.71425 * 16 15 13 26 26 C 1.54320 * 103.81325 * 38.69632 * 25 16 15 27 27 C 1.52998 * 112.07530 * 99.66772 * 26 25 16 28 28 C 1.47202 * 126.70213 * 179.97438 * 11 9 3 29 29 H 1.08998 * 109.46945 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47319 * 299.99703 * 1 2 3 31 31 H 1.09002 * 109.46944 * 59.99924 * 1 2 3 32 32 H 1.08997 * 109.47319 * 240.00297 * 2 1 3 33 33 H 1.09005 * 109.46793 * 119.99564 * 2 1 3 34 34 H 0.96992 * 119.99881 * 95.00657 * 5 3 2 35 35 H 1.08998 * 109.47091 * 89.99724 * 7 6 5 36 36 H 1.08994 * 109.46888 * 210.00349 * 7 6 5 37 37 H 1.08999 * 109.46491 * 329.99842 * 7 6 5 38 38 H 1.09001 * 110.06944 * 267.94523 * 12 11 9 39 39 H 1.09005 * 110.06845 * 29.46957 * 12 11 9 40 40 H 1.09001 * 109.46987 * 301.37829 * 14 13 12 41 41 H 1.08995 * 109.47276 * 61.38141 * 14 13 12 42 42 H 1.09005 * 109.46998 * 181.38145 * 14 13 12 43 43 H 1.09003 * 110.38649 * 255.10670 * 15 13 12 44 44 H 1.08997 * 110.39028 * 17.49156 * 15 13 12 45 45 H 0.97004 * 119.99985 * 180.02562 * 20 19 17 46 46 H 1.09000 * 110.28721 * 280.44449 * 25 16 15 47 47 H 1.09001 * 111.35538 * 157.46980 * 25 16 15 48 48 H 1.08995 * 109.47270 * 182.01170 * 27 26 25 49 49 H 1.09003 * 109.46856 * 302.01243 * 27 26 25 50 50 H 1.08998 * 109.47252 * 62.00959 * 27 26 25 51 51 H 1.08996 * 110.07211 * 330.53121 * 28 11 9 52 52 H 1.09007 * 110.06645 * 92.00518 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0975 1.2519 6 6 0.4351 2.6644 1.3670 7 6 0.0365 3.3386 2.6545 8 8 -0.3396 2.6320 0.4344 9 6 3.5419 1.4444 -0.1237 10 8 4.2216 1.9437 0.7479 11 7 4.1298 0.8912 -1.2030 12 6 3.4530 0.2431 -2.3382 13 6 4.3397 0.4978 -3.5718 14 6 4.4018 -0.7053 -4.5149 15 6 3.8560 1.7744 -4.2912 16 7 5.0967 2.5122 -4.6228 17 6 5.3819 3.2035 -5.7701 18 1 4.7804 3.0537 -6.6545 19 6 6.4440 4.0969 -5.7961 20 7 7.0602 4.4195 -4.6787 21 14 6.9987 4.8414 -7.4170 22 1 5.8758 5.6012 -8.0228 23 1 8.1422 5.7574 -7.1755 24 1 7.4187 3.7577 -8.3414 25 6 5.9861 2.3293 -3.4292 26 6 5.7337 0.8680 -3.0021 27 6 6.8307 -0.0746 -3.5010 28 6 5.5745 0.8119 -1.4740 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.2718 2.1232 1.9978 35 1 0.3215 4.3900 2.6175 36 1 -1.0424 3.2590 2.7874 37 1 0.5421 2.8542 3.4898 38 1 3.3595 -0.8275 -2.1563 39 1 2.4677 0.6849 -2.4880 40 1 4.7878 -1.5703 -3.9755 41 1 3.4019 -0.9264 -4.8882 42 1 5.0601 -0.4764 -5.3530 43 1 3.3136 1.5154 -5.2005 44 1 3.2266 2.3684 -3.6286 45 1 7.8022 5.0441 -4.6969 46 1 5.6948 3.0135 -2.6324 47 1 7.0347 2.4729 -3.6898 48 1 6.5926 -1.0969 -3.2073 49 1 6.8950 -0.0143 -4.5875 50 1 7.7859 0.2159 -3.0638 51 1 6.0884 1.6554 -1.0132 52 1 5.9762 -0.1257 -1.0897 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282992485.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:54 Heat of formation + Delta-G solvation = -64.779152 kcal Electronic energy + Delta-G solvation = -31870.879910 eV Core-core repulsion = 27870.138757 eV Total energy + Delta-G solvation = -4000.741153 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.11345 -40.98659 -39.68398 -36.60697 -36.42761 -34.65159 -33.63973 -33.05606 -32.39595 -30.64110 -29.03184 -28.29098 -27.17312 -26.52125 -26.38082 -24.01306 -22.90160 -21.70137 -21.55173 -20.78176 -19.37539 -18.89118 -18.36638 -17.60464 -17.22455 -16.88318 -16.72421 -16.57242 -15.95658 -15.81364 -15.62852 -15.11700 -14.98427 -14.86889 -14.55485 -14.38190 -14.31102 -13.66184 -13.48193 -13.43041 -13.33729 -13.23373 -13.18371 -13.05994 -12.91307 -12.91059 -12.69384 -12.57324 -12.50990 -12.42475 -12.13845 -12.00530 -11.86407 -11.75723 -11.44310 -11.21606 -11.10739 -11.00985 -10.93585 -10.70042 -10.16541 -9.74870 -8.87676 -7.90288 -5.26027 1.36942 1.44155 1.46735 1.53373 1.57752 1.72495 2.35278 2.47637 3.18945 3.29163 3.43974 3.52634 3.81664 3.83431 3.87893 3.95675 4.00364 4.13054 4.27232 4.36771 4.39185 4.44117 4.47710 4.54454 4.56692 4.64699 4.71612 4.77763 4.80183 4.85020 4.91622 4.96331 4.99038 5.04442 5.05477 5.10709 5.12125 5.21499 5.27550 5.29218 5.32896 5.41563 5.44461 5.46131 5.50928 5.65270 5.76315 6.16378 6.42165 6.49767 6.91299 6.99062 7.20251 7.68866 8.48018 9.22872 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014100 B = 0.003436 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.365346 B = 8146.054280 C = 8775.723971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.136 3.864 4 H 0.094 0.906 5 N -0.710 5.710 6 C 0.507 3.493 7 C -0.164 4.164 8 O -0.581 6.581 9 C 0.525 3.475 10 O -0.576 6.576 11 N -0.605 5.605 12 C 0.111 3.889 13 C -0.072 4.072 14 C -0.115 4.115 15 C 0.136 3.864 16 N -0.617 5.617 17 C -0.236 4.236 18 H 0.079 0.921 19 C -0.062 4.062 20 N -0.949 5.949 21 Si 0.975 3.025 22 H -0.279 1.279 23 H -0.297 1.297 24 H -0.273 1.273 25 C 0.185 3.815 26 C -0.084 4.084 27 C -0.112 4.112 28 C 0.123 3.877 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.415 0.585 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.057 0.943 44 H 0.002 0.998 45 H 0.247 0.753 46 H -0.024 1.024 47 H 0.050 0.950 48 H 0.089 0.911 49 H 0.048 0.952 50 H 0.047 0.953 51 H 0.047 0.953 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.695 -15.168 12.108 22.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C 0.027 3.973 4 H 0.112 0.888 5 N -0.364 5.364 6 C 0.296 3.704 7 C -0.223 4.223 8 O -0.461 6.461 9 C 0.314 3.686 10 O -0.456 6.456 11 N -0.336 5.336 12 C -0.011 4.011 13 C -0.074 4.074 14 C -0.172 4.172 15 C 0.010 3.990 16 N -0.341 5.341 17 C -0.365 4.365 18 H 0.097 0.903 19 C -0.256 4.256 20 N -0.597 5.597 21 Si 0.803 3.197 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.199 1.199 25 C 0.060 3.940 26 C -0.086 4.086 27 C -0.169 4.169 28 C 0.000 4.000 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.253 0.747 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.019 0.981 45 H 0.056 0.944 46 H -0.006 1.006 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.068 0.932 50 H 0.066 0.934 51 H 0.065 0.935 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.803 -14.695 11.880 21.766 hybrid contribution 1.023 1.704 -0.539 2.059 sum -9.779 -12.991 11.341 19.825 Atomic orbital electron populations 1.21712 0.93961 1.01719 1.01896 1.22006 0.97520 0.92160 1.04627 1.20740 0.89315 0.97398 0.89878 0.88822 1.45909 1.17316 1.57487 1.15721 1.21538 0.80447 0.77137 0.91285 1.21901 1.04905 1.02336 0.93182 1.90722 1.52333 1.60316 1.42749 1.20581 0.90560 0.76747 0.80719 1.90662 1.66215 1.47272 1.41487 1.48382 1.08366 1.56573 1.20264 1.22545 0.95991 0.99268 0.83334 1.22337 0.93488 0.96497 0.95094 1.21603 1.02606 0.95023 0.97987 1.21904 0.88645 0.91424 0.96986 1.45609 1.12892 1.59851 1.15797 1.19347 1.12495 1.15902 0.88794 0.90289 1.25675 1.00724 0.99056 1.00098 1.70118 1.25297 1.37672 1.26653 0.85207 0.77264 0.77928 0.79260 1.20471 1.22334 1.19877 1.21647 0.95337 0.90407 0.86626 1.22363 0.96495 0.96752 0.92974 1.21564 0.96037 0.98561 1.00749 1.22043 0.81112 1.01945 0.94892 0.91021 0.93600 0.93535 0.88447 0.90190 0.74727 0.87939 0.88032 0.87579 0.86727 0.89781 0.89716 0.90863 0.93473 0.92492 0.98066 0.94428 1.00612 0.93183 0.89211 0.93248 0.93381 0.93463 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.51 71.98 0.61 -1.99 16 2 C -0.12 -2.28 5.41 30.60 0.17 -2.12 16 3 C 0.14 3.40 1.99 44.25 0.09 3.49 16 4 H 0.09 2.76 7.30 -2.39 -0.02 2.75 16 5 N -0.71 -16.14 4.90 -446.08 -2.19 -18.32 16 6 C 0.51 11.54 6.51 87.66 0.57 12.11 16 7 C -0.16 -2.17 10.30 71.24 0.73 -1.43 16 8 O -0.58 -17.63 14.24 -3.03 -0.04 -17.68 16 9 C 0.53 16.03 7.31 87.66 0.64 16.67 16 10 O -0.58 -21.17 16.07 -3.04 -0.05 -21.22 16 11 N -0.60 -17.42 3.31 -814.77 -2.70 -20.12 16 12 C 0.11 2.55 4.14 86.60 0.36 2.91 16 13 C -0.07 -2.09 1.08 -50.68 -0.05 -2.15 16 14 C -0.11 -2.56 7.53 71.98 0.54 -2.02 16 15 C 0.14 5.41 6.32 86.51 0.55 5.96 16 16 N -0.62 -31.43 3.41 -683.66 -2.33 -33.76 16 17 C -0.24 -13.23 10.35 84.03 0.87 -12.36 16 18 H 0.08 4.22 7.85 -2.91 -0.02 4.20 16 19 C -0.06 -3.55 5.40 84.86 0.46 -3.09 16 20 N -0.95 -58.30 10.87 21.65 0.24 -58.06 16 21 Si 0.98 46.01 29.56 68.60 2.03 48.03 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 25 C 0.19 9.06 5.02 86.15 0.43 9.50 16 26 C -0.08 -2.84 1.06 -50.78 -0.05 -2.89 16 27 C -0.11 -3.22 7.45 71.98 0.54 -2.68 16 28 C 0.12 3.84 5.94 86.49 0.51 4.36 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.04 0.98 5.64 -2.39 -0.01 0.97 16 31 H 0.05 1.05 7.85 -2.39 -0.02 1.03 16 32 H 0.10 1.49 5.06 -2.39 -0.01 1.47 16 33 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.41 8.50 7.79 -92.71 -0.72 7.78 16 35 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.11 1.73 7.25 -2.39 -0.02 1.71 16 39 H 0.08 1.89 6.43 -2.38 -0.02 1.87 16 40 H 0.08 1.39 7.09 -2.39 -0.02 1.37 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.05 1.29 7.17 -2.38 -0.02 1.28 16 43 H 0.06 2.14 7.90 -2.39 -0.02 2.12 16 44 H 0.00 0.07 7.55 -2.39 -0.02 0.05 16 45 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 46 H -0.02 -1.37 7.51 -2.39 -0.02 -1.39 16 47 H 0.05 2.78 6.37 -2.39 -0.02 2.77 16 48 H 0.09 1.84 7.10 -2.39 -0.02 1.82 16 49 H 0.05 1.61 7.16 -2.39 -0.02 1.59 16 50 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.05 1.81 7.34 -2.39 -0.02 1.79 16 52 H 0.10 2.38 7.88 -2.38 -0.02 2.36 16 Total: -1.00 -78.20 391.55 2.11 -76.09 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.20 Total: 20.79 kcal Atomic # 6 Polarization: 17.30 SS G_CDS: 6.96 Total: 24.26 kcal Atomic # 7 Polarization: -123.28 SS G_CDS: -6.98 Total: -130.27 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.09 Total: -38.90 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -78.20 2.11 -76.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282992485.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.310 kcal (2) G-P(sol) polarization free energy of solvation -78.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds