Wall clock time and date at job start Tue Mar 31 2020 20:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47164 * 2 1 4 4 H 1.08998 * 109.47138 * 54.99314 * 3 2 1 5 5 N 1.46499 * 109.46914 * 294.99620 * 3 2 1 6 6 C 1.34770 * 120.00275 * 84.99542 * 5 3 2 7 7 C 1.50704 * 120.00335 * 179.97438 * 6 5 3 8 8 O 1.21286 * 120.00193 * 0.02562 * 6 5 3 9 9 C 1.50697 * 109.47304 * 174.99414 * 3 2 1 10 10 O 1.21276 * 120.00082 * 119.99580 * 9 3 2 11 11 N 1.34781 * 119.99772 * 300.00119 * 9 3 2 12 12 C 1.48107 * 127.84114 * 179.97438 * 11 9 3 13 13 C 1.54318 * 104.71646 * 140.21892 * 12 11 9 14 14 C 1.52992 * 112.07636 * 146.94125 * 13 12 11 15 15 C 1.53758 * 109.08130 * 271.64633 * 13 12 11 16 16 N 1.47194 * 106.40775 * 94.28485 * 15 13 12 17 17 C 1.36943 * 126.70173 * 211.29246 * 16 15 13 18 18 H 1.08003 * 119.99648 * 165.69159 * 17 16 15 19 19 C 1.38804 * 119.99839 * 345.69174 * 17 16 15 20 20 N 1.31622 * 120.00247 * 350.70109 * 19 17 16 21 21 Si 1.86810 * 119.99877 * 170.70063 * 19 17 16 22 22 H 1.48498 * 109.46844 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47269 * 120.00142 * 21 19 17 24 24 H 1.48497 * 109.46750 * 239.99912 * 21 19 17 25 25 C 1.47206 * 106.59519 * 31.55525 * 16 15 13 26 26 C 1.54031 * 106.26556 * 328.36981 * 25 16 15 27 27 C 1.53003 * 112.77079 * 141.67216 * 26 25 16 28 28 C 1.48107 * 127.84501 * 359.97438 * 11 9 3 29 29 H 1.08999 * 109.47069 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47460 * 300.00436 * 1 2 3 31 31 H 1.09002 * 109.46600 * 60.00840 * 1 2 3 32 32 H 1.08999 * 109.47460 * 239.99564 * 2 1 3 33 33 H 1.09002 * 109.46600 * 119.99160 * 2 1 3 34 34 H 0.96998 * 119.99851 * 265.00134 * 5 3 2 35 35 H 1.09005 * 109.46763 * 90.00218 * 7 6 5 36 36 H 1.08998 * 109.47669 * 210.00385 * 7 6 5 37 37 H 1.09005 * 109.46753 * 330.01040 * 7 6 5 38 38 H 1.09004 * 110.38761 * 21.41553 * 12 11 9 39 39 H 1.08998 * 110.49125 * 259.08319 * 12 11 9 40 40 H 1.08999 * 109.47342 * 182.01403 * 14 13 12 41 41 H 1.09002 * 109.47884 * 302.01866 * 14 13 12 42 42 H 1.09005 * 109.47396 * 62.01821 * 14 13 12 43 43 H 1.09001 * 110.06945 * 335.04142 * 15 13 12 44 44 H 1.09004 * 110.06676 * 213.52076 * 15 13 12 45 45 H 0.97001 * 120.00021 * 180.02562 * 20 19 17 46 46 H 1.09001 * 110.06421 * 87.68848 * 25 16 15 47 47 H 1.09000 * 110.06826 * 209.21160 * 25 16 15 48 48 H 1.08998 * 109.47125 * 301.38715 * 27 26 25 49 49 H 1.09003 * 109.46619 * 61.38129 * 27 26 25 50 50 H 1.08997 * 109.47252 * 181.38332 * 27 26 25 51 51 H 1.08993 * 110.39076 * 338.58915 * 28 11 9 52 52 H 1.09002 * 110.38915 * 100.86449 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 7 1.6525 2.0974 -1.2519 6 6 0.4353 2.6642 -1.3672 7 6 0.0368 3.3384 -2.6548 8 8 -0.3393 2.6326 -0.4344 9 6 3.5419 1.4444 0.1240 10 8 4.2217 1.9435 -0.7475 11 7 4.1296 0.8912 1.2034 12 6 5.5774 0.7966 1.5012 13 6 5.6850 1.0730 3.0156 14 6 6.8253 0.2858 3.6641 15 6 5.8268 2.5873 3.2413 16 7 4.4688 3.1005 3.4842 17 6 3.9926 4.3423 3.1579 18 1 2.9297 4.5335 3.1706 19 6 4.8760 5.3552 2.8111 20 7 6.1711 5.1823 2.9704 21 14 4.2268 6.9640 2.1180 22 1 2.7452 6.9063 2.0379 23 1 4.6320 8.0842 3.0045 24 1 4.7875 7.1798 0.7599 25 6 3.7244 2.0204 4.1521 26 6 4.3026 0.6993 3.6109 27 6 4.4104 -0.3844 4.6856 28 6 3.4744 0.2399 2.3610 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.2721 2.1230 -1.9978 35 1 -0.4402 2.6120 -3.3127 36 1 -0.6610 4.1478 -2.4404 37 1 0.9237 3.7430 -3.1426 38 1 6.1308 1.5479 0.9378 39 1 5.9501 -0.2012 1.2698 40 1 6.8404 0.4844 4.7358 41 1 6.6738 -0.7801 3.4942 42 1 7.7745 0.5924 3.2246 43 1 6.2523 3.0593 2.3556 44 1 6.4596 2.7786 4.1080 45 1 6.7883 5.8903 2.7283 46 1 3.8670 2.0797 5.2311 47 1 2.6641 2.0917 3.9100 48 1 5.0439 -0.0286 5.4981 49 1 3.4172 -0.6123 5.0725 50 1 4.8467 -1.2841 4.2519 51 1 2.4394 0.5707 2.4471 52 1 3.5188 -0.8447 2.2618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282992486.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:59 Heat of formation + Delta-G solvation = -41.372717 kcal Electronic energy + Delta-G solvation = -32683.757560 eV Core-core repulsion = 28684.031386 eV Total energy + Delta-G solvation = -3999.726174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.64429 -39.70713 -38.21456 -35.23976 -34.76269 -33.15544 -32.42816 -31.63011 -30.68909 -29.72295 -27.77593 -26.42326 -25.80819 -25.21132 -24.86919 -22.47499 -21.76158 -20.40720 -19.98311 -19.43343 -17.87236 -17.37000 -16.73310 -16.37440 -15.86607 -15.69149 -15.41469 -14.93543 -14.52834 -14.21179 -13.91864 -13.81265 -13.50107 -13.41585 -13.31697 -13.20158 -12.82579 -12.61519 -12.52355 -12.30534 -12.19349 -11.91524 -11.87410 -11.70364 -11.52285 -11.49434 -11.38332 -11.34163 -10.90703 -10.82338 -10.77318 -10.66426 -10.05479 -10.00473 -9.81222 -9.80420 -9.71610 -9.54997 -9.52677 -8.96246 -8.64699 -8.27284 -6.76877 -5.74717 -3.07008 2.66527 2.92382 2.98671 3.41423 3.48425 3.50155 3.53854 4.49883 4.54555 4.71365 4.83975 4.92050 5.00560 5.06001 5.16082 5.22436 5.32994 5.39632 5.41002 5.44655 5.54459 5.57532 5.61348 5.65247 5.71617 5.78797 5.82144 5.86237 5.90661 5.94667 6.03084 6.07981 6.09818 6.11261 6.26920 6.30343 6.36992 6.40001 6.45340 6.48672 6.56687 6.66761 6.82774 6.91554 7.40717 7.58571 7.59464 7.78378 7.89287 8.28348 8.28978 8.43877 9.19722 9.82152 10.53392 11.39301 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008954 B = 0.005954 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.276711 B = 4701.683098 C = 6657.466558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C 0.132 3.868 4 H 0.115 0.885 5 N -0.709 5.709 6 C 0.512 3.488 7 C -0.171 4.171 8 O -0.542 6.542 9 C 0.542 3.458 10 O -0.542 6.542 11 N -0.598 5.598 12 C 0.127 3.873 13 C -0.100 4.100 14 C -0.122 4.122 15 C 0.182 3.818 16 N -0.588 5.588 17 C -0.224 4.224 18 H 0.072 0.928 19 C -0.001 4.001 20 N -0.914 5.914 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.145 3.855 26 C -0.085 4.085 27 C -0.123 4.123 28 C 0.113 3.887 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.408 0.592 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.022 0.978 45 H 0.252 0.748 46 H 0.019 0.981 47 H 0.039 0.961 48 H 0.063 0.937 49 H 0.053 0.947 50 H 0.055 0.945 51 H 0.077 0.923 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 -14.630 -5.340 16.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C 0.024 3.976 4 H 0.133 0.867 5 N -0.363 5.363 6 C 0.300 3.700 7 C -0.231 4.231 8 O -0.420 6.420 9 C 0.329 3.671 10 O -0.420 6.420 11 N -0.330 5.330 12 C 0.004 3.996 13 C -0.102 4.102 14 C -0.180 4.180 15 C 0.056 3.944 16 N -0.312 5.312 17 C -0.353 4.353 18 H 0.090 0.910 19 C -0.198 4.198 20 N -0.561 5.561 21 Si 0.735 3.265 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.018 3.982 26 C -0.088 4.088 27 C -0.181 4.181 28 C -0.010 4.010 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.245 0.755 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.040 0.960 45 H 0.062 0.938 46 H 0.037 0.963 47 H 0.057 0.943 48 H 0.082 0.918 49 H 0.072 0.928 50 H 0.074 0.926 51 H 0.095 0.905 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.312 -14.070 -5.328 16.315 hybrid contribution 0.135 1.037 -0.618 1.215 sum -6.177 -13.033 -5.947 15.600 Atomic orbital electron populations 1.21785 0.94114 1.00618 1.03329 1.22019 0.97654 0.94421 1.03036 1.20752 0.91830 0.95189 0.89868 0.86685 1.45793 1.16946 1.57616 1.15972 1.20716 0.81219 0.77825 0.90276 1.21866 1.03723 1.02120 0.95378 1.90729 1.51334 1.59066 1.40848 1.19873 0.89320 0.77002 0.80862 1.90669 1.65193 1.45597 1.40531 1.48408 1.08364 1.56820 1.19402 1.22362 0.81240 1.00474 0.95514 1.22583 0.94024 1.00468 0.93141 1.21620 0.97323 0.98384 1.00684 1.21192 0.87469 0.85341 1.00396 1.44306 1.08944 1.10777 1.67140 1.18940 0.91538 0.85261 1.39514 0.90990 1.24791 0.95493 0.97694 1.01837 1.69926 1.00738 1.33053 1.52338 0.86160 0.78134 0.83632 0.78601 1.20416 1.21728 1.21661 1.21367 0.95151 0.86814 0.94879 1.22829 0.95266 0.96653 0.94007 1.21603 1.01420 0.97153 0.97881 1.22943 0.97099 0.95914 0.85068 0.93342 0.91815 0.92475 0.91571 0.90192 0.75517 0.89052 0.88825 0.90046 0.89919 0.92268 0.92122 0.93100 0.92672 0.90723 0.96036 0.93793 0.96330 0.94252 0.91842 0.92821 0.92610 0.90497 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.52 37.16 0.32 -1.39 16 2 C -0.13 -1.62 5.37 -26.73 -0.14 -1.76 16 3 C 0.13 2.06 2.00 -69.08 -0.14 1.92 16 4 H 0.12 2.07 7.39 -51.93 -0.38 1.69 16 5 N -0.71 -10.19 4.90 -54.93 -0.27 -10.46 16 6 C 0.51 7.27 6.51 -10.99 -0.07 7.20 16 7 C -0.17 -1.66 10.30 36.01 0.37 -1.29 16 8 O -0.54 -9.47 14.24 5.55 0.08 -9.39 16 9 C 0.54 9.91 7.33 -10.98 -0.08 9.83 16 10 O -0.54 -11.57 16.10 5.56 0.09 -11.48 16 11 N -0.60 -10.16 3.31 -167.87 -0.56 -10.72 16 12 C 0.13 2.16 6.05 -2.47 -0.01 2.15 16 13 C -0.10 -1.71 1.06 -152.33 -0.16 -1.87 16 14 C -0.12 -1.69 7.50 37.15 0.28 -1.41 16 15 C 0.18 4.23 4.70 -3.27 -0.02 4.22 16 16 N -0.59 -14.61 3.38 -171.01 -0.58 -15.19 16 17 C -0.22 -6.32 10.28 -15.06 -0.15 -6.47 16 18 H 0.07 2.03 7.85 -52.48 -0.41 1.62 16 19 C 0.00 -0.03 5.38 -17.43 -0.09 -0.12 16 20 N -0.91 -27.24 10.87 55.49 0.60 -26.63 16 21 Si 0.90 23.12 29.56 -169.99 -5.03 18.09 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 25 C 0.14 2.87 6.35 -3.12 -0.02 2.86 16 26 C -0.09 -1.32 1.15 -150.81 -0.17 -1.49 16 27 C -0.12 -1.45 7.65 37.16 0.28 -1.17 16 28 C 0.11 1.59 4.35 -1.10 0.00 1.59 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.86 7.85 -51.93 -0.41 0.45 16 31 H 0.06 0.74 5.65 -51.93 -0.29 0.45 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.89 5.27 -51.93 -0.27 0.62 16 34 H 0.41 5.43 7.79 -40.82 -0.32 5.12 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.67 7.16 -51.93 -0.37 1.30 16 39 H 0.06 0.85 7.97 -51.93 -0.41 0.43 16 40 H 0.06 0.84 7.10 -51.93 -0.37 0.47 16 41 H 0.05 0.57 7.16 -51.93 -0.37 0.20 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 2.03 6.02 -51.93 -0.31 1.72 16 44 H 0.02 0.55 7.88 -51.93 -0.41 0.14 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.99 16 46 H 0.02 0.38 7.93 -51.93 -0.41 -0.03 16 47 H 0.04 0.78 7.47 -51.93 -0.39 0.39 16 48 H 0.06 0.78 7.09 -51.93 -0.37 0.41 16 49 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.05 0.56 7.16 -51.93 -0.37 0.19 16 51 H 0.08 1.07 6.01 -51.93 -0.31 0.76 16 52 H 0.07 0.75 7.81 -51.93 -0.41 0.35 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -34.42 392.05 -8.26 -42.68 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.69 Total: 4.42 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 0.18 Total: 12.78 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: -0.80 Total: -63.00 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.17 Total: -20.88 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.03 Total: 18.09 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.42 -8.26 -42.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282992486.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.305 kcal (2) G-P(sol) polarization free energy of solvation -34.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds