Wall clock time and date at job start Tue Mar 31 2020 20:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47164 * 2 1 4 4 H 1.08998 * 109.47138 * 54.99314 * 3 2 1 5 5 N 1.46499 * 109.46914 * 294.99620 * 3 2 1 6 6 C 1.34770 * 120.00275 * 84.99542 * 5 3 2 7 7 C 1.50704 * 120.00335 * 179.97438 * 6 5 3 8 8 O 1.21286 * 120.00193 * 0.02562 * 6 5 3 9 9 C 1.50697 * 109.47304 * 174.99414 * 3 2 1 10 10 O 1.21276 * 120.00082 * 119.99580 * 9 3 2 11 11 N 1.34781 * 119.99772 * 300.00119 * 9 3 2 12 12 C 1.48107 * 127.84114 * 179.97438 * 11 9 3 13 13 C 1.54318 * 104.71646 * 140.21892 * 12 11 9 14 14 C 1.52992 * 112.07636 * 146.94125 * 13 12 11 15 15 C 1.53758 * 109.08130 * 271.64633 * 13 12 11 16 16 N 1.47194 * 106.40775 * 94.28485 * 15 13 12 17 17 C 1.36943 * 126.70173 * 211.29246 * 16 15 13 18 18 H 1.08003 * 119.99648 * 165.69159 * 17 16 15 19 19 C 1.38804 * 119.99839 * 345.69174 * 17 16 15 20 20 N 1.31622 * 120.00247 * 350.70109 * 19 17 16 21 21 Si 1.86810 * 119.99877 * 170.70063 * 19 17 16 22 22 H 1.48498 * 109.46844 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47269 * 120.00142 * 21 19 17 24 24 H 1.48497 * 109.46750 * 239.99912 * 21 19 17 25 25 C 1.47206 * 106.59519 * 31.55525 * 16 15 13 26 26 C 1.54031 * 106.26556 * 328.36981 * 25 16 15 27 27 C 1.53003 * 112.77079 * 141.67216 * 26 25 16 28 28 C 1.48107 * 127.84501 * 359.97438 * 11 9 3 29 29 H 1.08999 * 109.47069 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47460 * 300.00436 * 1 2 3 31 31 H 1.09002 * 109.46600 * 60.00840 * 1 2 3 32 32 H 1.08999 * 109.47460 * 239.99564 * 2 1 3 33 33 H 1.09002 * 109.46600 * 119.99160 * 2 1 3 34 34 H 0.96998 * 119.99851 * 265.00134 * 5 3 2 35 35 H 1.09005 * 109.46763 * 90.00218 * 7 6 5 36 36 H 1.08998 * 109.47669 * 210.00385 * 7 6 5 37 37 H 1.09005 * 109.46753 * 330.01040 * 7 6 5 38 38 H 1.09004 * 110.38761 * 21.41553 * 12 11 9 39 39 H 1.08998 * 110.49125 * 259.08319 * 12 11 9 40 40 H 1.08999 * 109.47342 * 182.01403 * 14 13 12 41 41 H 1.09002 * 109.47884 * 302.01866 * 14 13 12 42 42 H 1.09005 * 109.47396 * 62.01821 * 14 13 12 43 43 H 1.09001 * 110.06945 * 335.04142 * 15 13 12 44 44 H 1.09004 * 110.06676 * 213.52076 * 15 13 12 45 45 H 0.97001 * 120.00021 * 180.02562 * 20 19 17 46 46 H 1.09001 * 110.06421 * 87.68848 * 25 16 15 47 47 H 1.09000 * 110.06826 * 209.21160 * 25 16 15 48 48 H 1.08998 * 109.47125 * 301.38715 * 27 26 25 49 49 H 1.09003 * 109.46619 * 61.38129 * 27 26 25 50 50 H 1.08997 * 109.47252 * 181.38332 * 27 26 25 51 51 H 1.08993 * 110.39076 * 338.58915 * 28 11 9 52 52 H 1.09002 * 110.38915 * 100.86449 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 7 1.6525 2.0974 -1.2519 6 6 0.4353 2.6642 -1.3672 7 6 0.0368 3.3384 -2.6548 8 8 -0.3393 2.6326 -0.4344 9 6 3.5419 1.4444 0.1240 10 8 4.2217 1.9435 -0.7475 11 7 4.1296 0.8912 1.2034 12 6 5.5774 0.7966 1.5012 13 6 5.6850 1.0730 3.0156 14 6 6.8253 0.2858 3.6641 15 6 5.8268 2.5873 3.2413 16 7 4.4688 3.1005 3.4842 17 6 3.9926 4.3423 3.1579 18 1 2.9297 4.5335 3.1706 19 6 4.8760 5.3552 2.8111 20 7 6.1711 5.1823 2.9704 21 14 4.2268 6.9640 2.1180 22 1 2.7452 6.9063 2.0379 23 1 4.6320 8.0842 3.0045 24 1 4.7875 7.1798 0.7599 25 6 3.7244 2.0204 4.1521 26 6 4.3026 0.6993 3.6109 27 6 4.4104 -0.3844 4.6856 28 6 3.4744 0.2399 2.3610 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.2721 2.1230 -1.9978 35 1 -0.4402 2.6120 -3.3127 36 1 -0.6610 4.1478 -2.4404 37 1 0.9237 3.7430 -3.1426 38 1 6.1308 1.5479 0.9378 39 1 5.9501 -0.2012 1.2698 40 1 6.8404 0.4844 4.7358 41 1 6.6738 -0.7801 3.4942 42 1 7.7745 0.5924 3.2246 43 1 6.2523 3.0593 2.3556 44 1 6.4596 2.7786 4.1080 45 1 6.7883 5.8903 2.7283 46 1 3.8670 2.0797 5.2311 47 1 2.6641 2.0917 3.9100 48 1 5.0439 -0.0286 5.4981 49 1 3.4172 -0.6123 5.0725 50 1 4.8467 -1.2841 4.2519 51 1 2.4394 0.5707 2.4471 52 1 3.5188 -0.8447 2.2618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282992486.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:57 Heat of formation + Delta-G solvation = -66.132882 kcal Electronic energy + Delta-G solvation = -32684.831241 eV Core-core repulsion = 28684.031386 eV Total energy + Delta-G solvation = -4000.799855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.98818 -40.97017 -39.62025 -36.53845 -36.40686 -34.73406 -33.62085 -33.00109 -32.48970 -30.65434 -28.95811 -28.17087 -27.06268 -26.57605 -26.37761 -24.08356 -22.95422 -21.62477 -21.50278 -20.75810 -19.28015 -18.95383 -18.34607 -17.65480 -17.15085 -17.01820 -16.76291 -16.62121 -16.02862 -15.65439 -15.42492 -15.07374 -14.84304 -14.81458 -14.43763 -14.40595 -14.30425 -13.85736 -13.71065 -13.48248 -13.39068 -13.34107 -13.09467 -12.99697 -12.90150 -12.88154 -12.74156 -12.53271 -12.48261 -12.41914 -12.15522 -11.95265 -11.90213 -11.82497 -11.45672 -11.17340 -11.04111 -10.98500 -10.92903 -10.74862 -10.15371 -9.68361 -8.84012 -7.96905 -5.28465 1.31163 1.33804 1.42354 1.43984 1.61840 1.79339 2.37586 2.39626 3.22352 3.26887 3.46685 3.66226 3.71634 3.80725 3.87986 3.94929 4.00487 4.15266 4.34538 4.37334 4.43000 4.44872 4.51585 4.55288 4.62017 4.62860 4.74299 4.81840 4.83139 4.84746 4.88557 4.97201 4.98375 5.01654 5.09232 5.10616 5.12720 5.24826 5.27547 5.33610 5.35227 5.41530 5.43919 5.45344 5.52366 5.64616 5.80418 6.17763 6.48463 6.54984 7.02108 7.03260 7.19722 7.72131 8.42487 9.15789 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008954 B = 0.005954 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.276711 B = 4701.683098 C = 6657.466558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.121 4.121 3 C 0.138 3.862 4 H 0.085 0.915 5 N -0.710 5.710 6 C 0.505 3.495 7 C -0.164 4.164 8 O -0.581 6.581 9 C 0.531 3.469 10 O -0.585 6.585 11 N -0.602 5.602 12 C 0.127 3.873 13 C -0.090 4.090 14 C -0.116 4.116 15 C 0.192 3.808 16 N -0.610 5.610 17 C -0.228 4.228 18 H 0.065 0.935 19 C -0.057 4.057 20 N -0.941 5.941 21 Si 0.959 3.041 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.297 1.297 25 C 0.137 3.863 26 C -0.072 4.072 27 C -0.117 4.117 28 C 0.111 3.889 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.413 0.587 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.037 0.963 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.024 0.976 44 H -0.011 1.011 45 H 0.246 0.754 46 H 0.017 0.983 47 H 0.037 0.963 48 H 0.057 0.943 49 H 0.072 0.928 50 H 0.089 0.911 51 H 0.078 0.922 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.321 -18.325 -5.493 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.159 4.159 3 C 0.029 3.971 4 H 0.103 0.897 5 N -0.364 5.364 6 C 0.294 3.706 7 C -0.223 4.223 8 O -0.461 6.461 9 C 0.320 3.680 10 O -0.466 6.466 11 N -0.333 5.333 12 C 0.004 3.996 13 C -0.092 4.092 14 C -0.174 4.174 15 C 0.066 3.934 16 N -0.334 5.334 17 C -0.358 4.358 18 H 0.083 0.917 19 C -0.251 4.251 20 N -0.590 5.590 21 Si 0.788 3.212 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.224 1.224 25 C 0.011 3.989 26 C -0.074 4.074 27 C -0.174 4.174 28 C -0.010 4.010 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.251 0.749 35 H 0.139 0.861 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.122 0.878 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.067 0.933 43 H 0.042 0.958 44 H 0.007 0.993 45 H 0.055 0.945 46 H 0.035 0.965 47 H 0.056 0.944 48 H 0.076 0.924 49 H 0.091 0.909 50 H 0.108 0.892 51 H 0.096 0.904 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.522 -17.807 -5.448 20.083 hybrid contribution 0.498 2.240 -0.513 2.351 sum -7.025 -15.567 -5.960 18.089 Atomic orbital electron populations 1.21702 0.93881 1.01754 1.01805 1.21980 0.97578 0.91893 1.04474 1.20695 0.89683 0.97251 0.89479 0.89693 1.45900 1.17227 1.57630 1.15669 1.21555 0.80541 0.77171 0.91331 1.21902 1.04519 1.02477 0.93375 1.90709 1.52305 1.60525 1.42549 1.20425 0.90337 0.76420 0.80827 1.90637 1.66298 1.47387 1.42238 1.48579 1.08659 1.56346 1.19710 1.22382 0.81237 1.01335 0.94611 1.22470 0.96753 0.95991 0.93975 1.21618 0.95341 1.00213 1.00183 1.20963 0.86127 0.89722 0.96588 1.44543 1.10091 1.10938 1.67788 1.19162 0.91288 0.86941 1.38379 0.91682 1.25484 0.95827 1.00668 1.03122 1.70106 1.01551 1.33521 1.53795 0.85297 0.77785 0.80621 0.77485 1.19719 1.21044 1.22397 1.21638 0.94887 0.87834 0.94520 1.22816 0.93498 0.95493 0.95623 1.21618 1.02981 0.96503 0.96302 1.23236 0.96528 0.98387 0.82888 0.90696 0.93754 0.93675 0.90204 0.88484 0.74945 0.86140 0.88692 0.88674 0.94412 0.87842 0.92078 0.88731 0.93299 0.95777 0.99300 0.94475 0.96527 0.94415 0.92359 0.90872 0.89200 0.90401 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.52 71.98 0.61 -2.38 16 2 C -0.12 -2.67 5.37 30.60 0.16 -2.51 16 3 C 0.14 4.28 2.00 44.25 0.09 4.36 16 4 H 0.09 3.16 7.39 -2.39 -0.02 3.15 16 5 N -0.71 -20.43 4.90 -446.10 -2.19 -22.62 16 6 C 0.50 14.23 6.51 87.66 0.57 14.80 16 7 C -0.16 -2.94 10.30 71.24 0.73 -2.20 16 8 O -0.58 -20.57 14.24 -3.05 -0.04 -20.61 16 9 C 0.53 19.53 7.33 87.66 0.64 20.17 16 10 O -0.58 -25.80 16.10 -3.02 -0.05 -25.85 16 11 N -0.60 -19.74 3.31 -803.41 -2.66 -22.40 16 12 C 0.13 4.21 6.05 86.52 0.52 4.73 16 13 C -0.09 -2.97 1.06 -50.77 -0.05 -3.02 16 14 C -0.12 -2.86 7.50 71.98 0.54 -2.32 16 15 C 0.19 9.37 4.70 86.50 0.41 9.78 16 16 N -0.61 -31.51 3.38 -694.96 -2.35 -33.86 16 17 C -0.23 -13.44 10.28 84.03 0.86 -12.58 16 18 H 0.07 3.82 7.85 -2.91 -0.02 3.80 16 19 C -0.06 -3.45 5.38 84.86 0.46 -2.99 16 20 N -0.94 -59.39 10.87 21.65 0.24 -59.15 16 21 Si 0.96 49.56 29.56 68.60 2.03 51.59 16 22 H -0.27 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 24 H -0.30 -15.54 7.11 99.48 0.71 -14.83 16 25 C 0.14 5.41 6.35 86.59 0.55 5.96 16 26 C -0.07 -2.04 1.15 -49.78 -0.06 -2.09 16 27 C -0.12 -2.15 7.65 71.98 0.55 -1.60 16 28 C 0.11 2.75 4.35 87.41 0.38 3.13 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.04 1.16 7.85 -2.39 -0.02 1.14 16 31 H 0.04 1.11 5.65 -2.39 -0.01 1.10 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.10 1.80 5.27 -2.39 -0.01 1.78 16 34 H 0.41 11.03 7.79 -92.71 -0.72 10.31 16 35 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.04 1.59 7.16 -2.38 -0.02 1.58 16 39 H 0.10 2.56 7.97 -2.39 -0.02 2.54 16 40 H 0.06 1.53 7.10 -2.39 -0.02 1.51 16 41 H 0.09 1.57 7.16 -2.39 -0.02 1.55 16 42 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.02 1.40 6.02 -2.39 -0.01 1.39 16 44 H -0.01 -0.59 7.88 -2.38 -0.02 -0.61 16 45 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 46 H 0.02 0.68 7.93 -2.39 -0.02 0.66 16 47 H 0.04 1.48 7.47 -2.39 -0.02 1.47 16 48 H 0.06 1.18 7.09 -2.39 -0.02 1.16 16 49 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.09 1.13 7.16 -2.39 -0.02 1.12 16 51 H 0.08 1.96 6.01 -2.39 -0.01 1.94 16 52 H 0.12 1.85 7.81 -2.39 -0.02 1.83 16 Total: -1.00 -83.57 392.05 2.14 -81.42 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.20 Total: 20.26 kcal Atomic # 6 Polarization: 24.26 SS G_CDS: 6.97 Total: 31.23 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -6.96 Total: -138.04 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -0.09 Total: -46.46 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.03 Total: 51.59 kcal Total: -83.57 2.14 -81.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282992486.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.288 kcal (2) G-P(sol) polarization free energy of solvation -83.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds