Wall clock time and date at job start Tue Mar 31 2020 20:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47021 * 2 1 4 4 H 1.09000 * 109.47249 * 54.99907 * 3 2 1 5 5 C 1.52994 * 109.47239 * 294.99668 * 3 2 1 6 6 C 1.50702 * 109.46857 * 174.99720 * 3 2 1 7 7 O 1.21276 * 120.00583 * 359.97438 * 6 3 2 8 8 N 1.34787 * 119.99508 * 179.97438 * 6 3 2 9 9 C 1.46499 * 119.99775 * 179.97438 * 8 6 3 10 10 C 1.52495 * 112.33065 * 68.80380 * 9 8 6 11 11 C 1.56054 * 102.40546 * 75.43436 * 10 9 8 12 12 C 1.55886 * 105.88628 * 25.45234 * 11 10 9 13 13 C 1.49139 * 104.19311 * 5.32349 * 12 11 10 14 14 H 1.08999 * 105.98625 * 74.60144 * 13 12 11 15 15 N 1.42325 * 131.07872 * 203.69226 * 13 12 11 16 16 C 1.46904 * 110.99600 * 278.22507 * 15 13 12 17 17 C 1.50706 * 109.46676 * 170.00295 * 16 15 13 18 18 O 1.21288 * 120.00284 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99730 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99910 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99959 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00053 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99930 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99918 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47118 * 269.99889 * 24 22 20 26 26 H 1.48499 * 109.47134 * 30.00409 * 24 22 20 27 27 H 1.48498 * 109.47011 * 150.00030 * 24 22 20 28 28 C 1.49726 * 105.64733 * 157.82083 * 15 13 12 29 29 C 1.52727 * 112.81237 * 289.89645 * 9 8 6 30 30 H 1.09000 * 109.47698 * 300.00104 * 1 2 3 31 31 H 1.09003 * 109.47234 * 59.99966 * 1 2 3 32 32 H 1.09006 * 109.47154 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47698 * 239.99896 * 2 1 3 34 34 H 1.09006 * 109.46956 * 119.99589 * 2 1 3 35 35 H 1.09008 * 109.46852 * 59.99844 * 5 3 2 36 36 H 1.08998 * 109.47479 * 179.97438 * 5 3 2 37 37 H 1.09000 * 109.47196 * 300.00272 * 5 3 2 38 38 H 0.97000 * 120.00168 * 0.02562 * 8 6 3 39 39 H 1.08993 * 110.82023 * 317.20570 * 10 9 8 40 40 H 1.08999 * 110.98757 * 193.73871 * 10 9 8 41 41 H 1.09000 * 110.16917 * 266.35117 * 11 10 9 42 42 H 1.08997 * 110.23243 * 144.58937 * 11 10 9 43 43 H 1.09003 * 110.48854 * 246.64304 * 12 11 10 44 44 H 1.09004 * 110.48972 * 123.99782 * 12 11 10 45 45 H 1.08996 * 109.47230 * 50.00842 * 16 15 13 46 46 H 1.09002 * 109.47146 * 290.00074 * 16 15 13 47 47 H 0.96996 * 119.99887 * 0.02562 * 19 17 16 48 48 H 0.97001 * 119.99781 * 359.97438 * 23 22 20 49 49 H 1.08999 * 110.05564 * 111.98955 * 28 15 13 50 50 H 1.08997 * 110.04987 * 233.46831 * 28 15 13 51 51 H 1.08998 * 111.06535 * 40.85408 * 29 9 8 52 52 H 1.09000 * 111.05887 * 164.81475 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5419 1.4443 0.1239 7 8 4.1450 0.3953 0.2048 8 7 4.2149 2.6119 0.1449 9 6 5.6749 2.6137 0.2659 10 6 6.3603 2.0655 -0.9812 11 6 6.2145 3.2468 -1.9905 12 6 6.0856 4.5357 -1.1232 13 6 6.2946 4.0585 0.2743 14 1 7.3630 3.8646 0.3686 15 7 5.8833 4.6075 1.5213 16 6 6.8010 5.6684 1.9576 17 6 6.2093 6.3887 3.1417 18 8 5.1297 6.0512 3.5794 19 7 6.8803 7.4074 3.7150 20 6 6.3418 8.0630 4.7919 21 1 5.3800 7.7630 5.1811 22 6 7.0333 9.1135 5.3826 23 7 8.2033 9.4789 4.9087 24 14 6.2999 10.0063 6.8504 25 1 5.4737 11.1450 6.3748 26 1 5.4499 9.0680 7.6264 27 1 7.3931 10.5158 7.7167 28 6 5.8877 3.4635 2.4873 29 6 6.1550 2.1749 1.6477 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.5489 2.1252 -1.3969 36 1 1.9982 3.1543 -1.3072 37 1 2.0699 1.5875 -2.1491 38 1 3.7325 3.4510 0.0806 39 1 5.8456 1.1773 -1.3474 40 1 7.4108 1.8498 -0.7863 41 1 5.3205 3.1127 -2.5994 42 1 7.0967 3.3092 -2.6276 43 1 5.0926 4.9717 -1.2330 44 1 6.8534 5.2589 -1.3981 45 1 6.9537 6.3749 1.1418 46 1 7.7571 5.2281 2.2408 47 1 7.7439 7.6770 3.3652 48 1 8.5843 9.0150 4.1468 49 1 6.6789 3.5999 3.2245 50 1 4.9208 3.3911 2.9851 51 1 5.5661 1.3363 2.0190 52 1 7.2169 1.9292 1.6336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284029172.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:10 Heat of formation + Delta-G solvation = -64.754073 kcal Electronic energy + Delta-G solvation = -30879.839352 eV Core-core repulsion = 26879.099286 eV Total energy + Delta-G solvation = -4000.740065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.39514 -39.35066 -38.14831 -35.63856 -35.33236 -34.15231 -33.65496 -31.53678 -30.97038 -29.69865 -28.42179 -26.80623 -25.96357 -25.47266 -23.95680 -22.57929 -21.48485 -20.48716 -19.79555 -19.51277 -19.08817 -17.88113 -17.27276 -16.67388 -16.12715 -15.75480 -15.48145 -15.40470 -14.96794 -14.64381 -14.42445 -14.19975 -13.85575 -13.70335 -13.69756 -13.30186 -13.08113 -12.92681 -12.78220 -12.42166 -12.39160 -12.13225 -11.96605 -11.88446 -11.80005 -11.62067 -11.37198 -11.19874 -11.03813 -11.00086 -10.90206 -10.89591 -10.76787 -10.69726 -10.33301 -10.22141 -9.85966 -9.60510 -9.52877 -9.04225 -8.50783 -8.03300 -7.98561 -6.74609 -3.87644 2.64919 3.07817 3.30903 3.34935 3.53883 3.63309 3.85853 3.96829 4.28854 4.49370 4.52491 4.60293 4.70733 4.72182 4.90597 4.96198 5.02736 5.08609 5.09970 5.15966 5.23881 5.25452 5.28178 5.35588 5.37506 5.50071 5.56217 5.58877 5.61062 5.64360 5.66824 5.70090 5.72419 5.78371 5.85334 5.87387 5.92173 5.96885 6.02559 6.02817 6.11950 6.13957 6.17819 6.33954 6.60935 7.00826 7.28102 7.55806 7.81976 8.08881 8.25094 8.61468 8.81842 9.48816 9.90109 10.68974 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.002683 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.237827 B =10435.104557 C =11465.739365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C -0.113 4.113 4 H 0.098 0.902 5 C -0.144 4.144 6 C 0.520 3.480 7 O -0.544 6.544 8 N -0.696 5.696 9 C 0.161 3.839 10 C -0.118 4.118 11 C -0.115 4.115 12 C -0.101 4.101 13 C 0.056 3.944 14 H 0.030 0.970 15 N -0.484 5.484 16 C 0.041 3.959 17 C 0.448 3.552 18 O -0.568 6.568 19 N -0.579 5.579 20 C -0.380 4.380 21 H 0.099 0.901 22 C -0.011 4.011 23 N -0.903 5.903 24 Si 1.093 2.907 25 H -0.285 1.285 26 H -0.284 1.284 27 H -0.281 1.281 28 C 0.061 3.939 29 C -0.138 4.138 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.407 0.593 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.050 0.950 47 H 0.374 0.626 48 H 0.261 0.739 49 H 0.056 0.944 50 H 0.087 0.913 51 H 0.083 0.917 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 -15.056 -15.421 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.141 4.141 3 C -0.134 4.134 4 H 0.116 0.884 5 C -0.202 4.202 6 C 0.307 3.693 7 O -0.421 6.421 8 N -0.347 5.347 9 C 0.074 3.926 10 C -0.157 4.157 11 C -0.153 4.153 12 C -0.139 4.139 13 C -0.055 4.055 14 H 0.048 0.952 15 N -0.208 5.208 16 C -0.091 4.091 17 C 0.234 3.766 18 O -0.451 6.451 19 N -0.218 5.218 20 C -0.509 4.509 21 H 0.117 0.883 22 C -0.213 4.213 23 N -0.543 5.543 24 Si 0.919 3.081 25 H -0.211 1.211 26 H -0.210 1.210 27 H -0.207 1.207 28 C -0.066 4.066 29 C -0.177 4.177 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.242 0.758 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.068 0.932 47 H 0.207 0.793 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.105 0.895 51 H 0.101 0.899 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.515 -14.544 -13.972 21.523 hybrid contribution 1.025 -0.820 -1.229 1.798 sum -6.489 -15.364 -15.201 22.566 Atomic orbital electron populations 1.21851 0.95599 1.01771 1.01936 1.21313 0.95224 0.94244 1.03311 1.21367 0.92097 0.99313 1.00663 0.88406 1.21814 1.02291 1.00303 0.95763 1.20625 0.89753 0.83512 0.75452 1.90664 1.70250 1.31465 1.49745 1.45582 1.06111 1.08909 1.74140 1.21424 0.80727 0.96189 0.94251 1.22309 1.00461 0.98368 0.94579 1.22815 1.01902 0.93147 0.97472 1.21245 1.02873 0.97645 0.92117 1.21720 0.98185 0.93455 0.92152 0.95243 1.62027 1.49412 1.08972 1.00343 1.22103 0.93642 0.94933 0.98390 1.19629 0.87230 0.83555 0.86234 1.90519 1.21913 1.67376 1.65289 1.41945 1.19732 1.30410 1.29696 1.20543 1.06874 1.15396 1.08093 0.88345 1.26489 0.95469 0.95884 1.03437 1.70874 1.16763 1.41785 1.24841 0.83098 0.75206 0.75636 0.74133 1.21122 1.20955 1.20681 1.23549 1.02857 0.86467 0.93706 1.22792 1.01384 0.98760 0.94741 0.92617 0.92486 0.92591 0.91515 0.91194 0.91271 0.92069 0.92241 0.75764 0.90290 0.90579 0.91439 0.91462 0.90877 0.91144 0.89561 0.93237 0.79281 0.92786 0.92594 0.89514 0.89881 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.15 0.36 -0.74 16 2 C -0.10 -0.93 4.75 -26.73 -0.13 -1.06 16 3 C -0.11 -1.04 2.72 -91.77 -0.25 -1.29 16 4 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.14 -1.05 8.84 37.15 0.33 -0.72 16 6 C 0.52 6.19 6.64 -10.98 -0.07 6.12 16 7 O -0.54 -8.11 14.09 5.56 0.08 -8.03 16 8 N -0.70 -7.96 4.67 -45.86 -0.21 -8.17 16 9 C 0.16 1.94 0.29 -129.93 -0.04 1.91 16 10 C -0.12 -1.26 5.94 -25.36 -0.15 -1.41 16 11 C -0.12 -1.03 6.83 -23.55 -0.16 -1.19 16 12 C -0.10 -1.04 6.50 -27.09 -0.18 -1.21 16 13 C 0.06 0.70 2.03 -69.73 -0.14 0.56 16 14 H 0.03 0.38 7.22 -51.93 -0.37 0.00 16 15 N -0.48 -7.72 4.83 -226.56 -1.09 -8.82 16 16 C 0.04 0.71 5.03 -4.97 -0.02 0.69 16 17 C 0.45 10.48 7.59 -10.98 -0.08 10.40 16 18 O -0.57 -15.28 15.29 5.55 0.08 -15.19 16 19 N -0.58 -14.52 5.28 -10.96 -0.06 -14.58 16 20 C -0.38 -10.66 9.68 -14.93 -0.14 -10.80 16 21 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 22 C -0.01 -0.29 5.50 -17.47 -0.10 -0.39 16 23 N -0.90 -25.33 13.68 55.50 0.76 -24.57 16 24 Si 1.09 24.37 29.92 -169.99 -5.09 19.29 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 28 C 0.06 0.97 5.79 -0.58 0.00 0.97 16 29 C -0.14 -1.84 6.05 -25.21 -0.15 -1.99 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.36 6.57 -51.93 -0.34 0.02 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.73 7.96 -51.93 -0.41 0.32 16 35 H 0.07 0.42 6.57 -51.92 -0.34 0.08 16 36 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.41 4.46 8.02 -40.82 -0.33 4.13 16 39 H 0.08 0.94 7.02 -51.93 -0.36 0.57 16 40 H 0.08 0.76 8.13 -51.93 -0.42 0.34 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 46 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 47 H 0.37 8.69 6.73 -40.82 -0.27 8.42 16 48 H 0.26 7.03 6.78 -40.82 -0.28 6.75 16 49 H 0.06 0.94 7.47 -51.93 -0.39 0.55 16 50 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 51 H 0.08 1.20 7.22 -51.93 -0.37 0.82 16 52 H 0.08 0.93 8.13 -51.93 -0.42 0.50 16 LS Contribution 402.81 15.07 6.07 6.07 Total: -1.00 -33.06 402.81 -9.33 -42.39 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -8.94 Total: 11.77 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -0.93 Total: -0.15 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.61 Total: -56.15 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.16 Total: -23.22 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.09 Total: 19.29 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.06 -9.33 -42.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284029172.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.363 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds