Wall clock time and date at job start Tue Mar 31 2020 20:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46904 * 2 1 4 4 H 1.09000 * 109.47086 * 55.00302 * 3 2 1 5 5 C 1.52997 * 109.47408 * 295.00246 * 3 2 1 6 6 C 1.50705 * 109.47337 * 174.99704 * 3 2 1 7 7 O 1.21280 * 119.99359 * 0.02562 * 6 3 2 8 8 N 1.34770 * 120.00042 * 180.02562 * 6 3 2 9 9 C 1.46500 * 119.99647 * 180.02562 * 8 6 3 10 10 C 1.51960 * 111.00005 * 289.93085 * 9 8 6 11 11 C 1.56201 * 101.92078 * 287.77804 * 10 9 8 12 12 C 1.55859 * 105.91456 * 334.87510 * 11 10 9 13 13 C 1.49902 * 104.24886 * 353.51674 * 12 11 10 14 14 H 1.08999 * 108.29886 * 281.49874 * 13 12 11 15 15 N 1.43891 * 127.90734 * 149.56509 * 13 12 11 16 16 C 1.46901 * 110.99857 * 78.53723 * 15 13 12 17 17 C 1.50702 * 109.46594 * 169.99915 * 16 15 13 18 18 O 1.21284 * 120.00473 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99340 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99509 * 180.02562 * 19 17 16 21 21 H 1.07990 * 120.00228 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99637 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00071 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99673 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46847 * 90.00132 * 24 22 20 26 26 H 1.48497 * 109.46838 * 209.99756 * 24 22 20 27 27 H 1.48498 * 109.47348 * 329.99825 * 24 22 20 28 28 C 1.49401 * 103.27023 * 197.77185 * 15 13 12 29 29 C 1.51485 * 111.05476 * 70.05994 * 9 8 6 30 30 H 1.08998 * 109.47682 * 299.99944 * 1 2 3 31 31 H 1.09001 * 109.46880 * 60.00107 * 1 2 3 32 32 H 1.09004 * 109.46902 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47225 * 240.00677 * 2 1 3 34 34 H 1.09001 * 109.46880 * 119.99893 * 2 1 3 35 35 H 1.08995 * 109.47023 * 180.02562 * 5 3 2 36 36 H 1.09005 * 109.46803 * 299.99375 * 5 3 2 37 37 H 1.08998 * 109.47251 * 59.99754 * 5 3 2 38 38 H 0.96994 * 120.00286 * 0.02562 * 8 6 3 39 39 H 1.08994 * 110.91369 * 169.64038 * 10 9 8 40 40 H 1.09006 * 110.99120 * 45.94196 * 10 9 8 41 41 H 1.09002 * 110.17318 * 215.74165 * 11 10 9 42 42 H 1.08996 * 110.17276 * 94.00740 * 11 10 9 43 43 H 1.09004 * 110.47689 * 112.21269 * 12 11 10 44 44 H 1.09007 * 110.47526 * 234.82365 * 12 11 10 45 45 H 1.08996 * 109.47084 * 289.99951 * 16 15 13 46 46 H 1.09003 * 109.47073 * 50.00427 * 16 15 13 47 47 H 0.96999 * 120.00527 * 359.97438 * 19 17 16 48 48 H 0.97005 * 120.00105 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.79259 * 266.75664 * 28 15 13 50 50 H 1.09002 * 110.33454 * 145.28822 * 28 15 13 51 51 H 1.08998 * 110.67874 * 203.09996 * 29 9 8 52 52 H 1.09003 * 110.67293 * 326.08761 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4445 0.1239 7 8 4.1450 0.3953 0.2038 8 7 4.2147 2.6120 0.1459 9 6 5.6748 2.6137 0.2658 10 6 6.1079 2.1688 1.6528 11 6 5.7137 3.4030 2.5252 12 6 5.7137 4.6265 1.5597 13 6 6.2509 4.0798 0.2714 14 1 7.3345 4.0011 0.3584 15 7 5.9442 4.5091 -1.0673 16 6 6.6779 5.7354 -1.4079 17 6 6.5281 6.0176 -2.8807 18 8 5.8749 5.2705 -3.5780 19 7 7.1208 7.0997 -3.4231 20 6 6.9841 7.3567 -4.7628 21 1 6.4019 6.6920 -5.3835 22 6 7.5948 8.4727 -5.3219 23 7 8.3029 9.2818 -4.5665 24 14 7.4091 8.8225 -7.1475 25 1 6.2130 9.6742 -7.3691 26 1 8.6182 9.5290 -7.6415 27 1 7.2486 7.5425 -7.8830 28 6 6.3947 3.3591 -1.9079 29 6 6.3254 2.0947 -1.0000 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9989 3.1541 -1.3074 36 1 2.0699 1.5877 -2.1491 37 1 0.5489 2.1253 -1.3969 38 1 3.7323 3.4510 0.0824 39 1 7.1833 1.9949 1.6875 40 1 5.5607 1.2797 1.9663 41 1 6.4453 3.5510 3.3195 42 1 4.7206 3.2604 2.9513 43 1 4.7001 5.0029 1.4211 44 1 6.3648 5.4132 1.9410 45 1 6.2752 6.5707 -0.8351 46 1 7.7333 5.6057 -1.1684 47 1 7.6435 7.6970 -2.8655 48 1 8.7295 10.0607 -4.9569 49 1 7.4192 3.5246 -2.2412 50 1 5.7366 3.2381 -2.7684 51 1 7.3258 1.7157 -0.7910 52 1 5.7103 1.3210 -1.4594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284029174.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:13 Heat of formation + Delta-G solvation = -66.312328 kcal Electronic energy + Delta-G solvation = -31030.161496 eV Core-core repulsion = 27029.353859 eV Total energy + Delta-G solvation = -4000.807636 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.31810 -39.22857 -38.06350 -35.53143 -35.18152 -33.83565 -33.48204 -31.54292 -31.10844 -29.60995 -28.37741 -26.62060 -26.02877 -25.33513 -24.09135 -22.43204 -21.39708 -20.33770 -19.75299 -19.30576 -18.88248 -17.83921 -17.19224 -16.51701 -15.73021 -15.67847 -15.30096 -15.12529 -14.97704 -14.73408 -14.40692 -14.09599 -13.90853 -13.68849 -13.55759 -13.29823 -13.02437 -12.74035 -12.49226 -12.33945 -12.22010 -12.05346 -11.82139 -11.69334 -11.65326 -11.54172 -11.43362 -11.33487 -11.09928 -10.94664 -10.89747 -10.81844 -10.73631 -10.57826 -10.41135 -10.26657 -10.17364 -9.52332 -9.48486 -8.93894 -8.43560 -8.05644 -7.96995 -6.44292 -3.85104 2.74999 3.15796 3.20091 3.24748 3.30407 3.78337 3.88431 4.06013 4.23329 4.58616 4.62505 4.70554 4.80562 4.82313 4.97647 5.08667 5.13768 5.17220 5.21647 5.23792 5.28841 5.33025 5.34569 5.47279 5.48579 5.59861 5.64455 5.69489 5.73009 5.75324 5.77965 5.84093 5.85743 5.89158 5.92558 5.98923 6.03398 6.05878 6.15909 6.16610 6.21493 6.25357 6.36117 6.58586 6.72082 7.09838 7.31807 7.52733 7.67420 8.03237 8.36117 8.58557 9.15325 9.51292 10.02639 10.73404 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014516 B = 0.002836 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.496997 B = 9870.220609 C =11102.906601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C -0.110 4.110 4 H 0.092 0.908 5 C -0.146 4.146 6 C 0.519 3.481 7 O -0.546 6.546 8 N -0.696 5.696 9 C 0.167 3.833 10 C -0.118 4.118 11 C -0.115 4.115 12 C -0.103 4.103 13 C 0.041 3.959 14 H 0.044 0.956 15 N -0.476 5.476 16 C 0.035 3.965 17 C 0.442 3.558 18 O -0.580 6.580 19 N -0.563 5.563 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.056 3.944 29 C -0.128 4.128 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.405 0.595 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.049 0.951 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.044 0.956 50 H 0.101 0.899 51 H 0.071 0.929 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.588 -11.824 15.118 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.132 4.132 4 H 0.110 0.890 5 C -0.204 4.204 6 C 0.305 3.695 7 O -0.424 6.424 8 N -0.348 5.348 9 C 0.080 3.920 10 C -0.157 4.157 11 C -0.153 4.153 12 C -0.141 4.141 13 C -0.069 4.069 14 H 0.062 0.938 15 N -0.199 5.199 16 C -0.096 4.096 17 C 0.228 3.772 18 O -0.464 6.464 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.071 4.071 29 C -0.167 4.167 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.241 0.759 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.063 0.937 50 H 0.119 0.881 51 H 0.089 0.911 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.027 -12.746 14.550 21.346 hybrid contribution 1.104 1.168 -0.523 1.690 sum -7.924 -11.578 14.027 19.839 Atomic orbital electron populations 1.21848 0.95693 1.01701 1.01870 1.21317 0.95129 0.94396 1.03297 1.21346 0.92163 0.99111 1.00555 0.88956 1.21829 1.01976 1.00854 0.95720 1.20597 0.89751 0.83592 0.75559 1.90661 1.70302 1.31482 1.49954 1.45725 1.06343 1.08796 1.73928 1.21140 0.80719 0.96113 0.94066 1.22236 1.01354 0.98343 0.93738 1.22828 1.01551 0.93394 0.97553 1.21406 1.02034 0.97677 0.93030 1.22494 0.98522 0.94608 0.91320 0.93785 1.63681 1.53184 1.02555 1.00506 1.22129 0.96575 0.93983 0.96930 1.19701 0.84971 0.84117 0.88447 1.90502 1.44227 1.49105 1.62539 1.41860 1.45591 1.22774 1.09736 1.19687 1.30217 1.08783 0.84112 0.87926 1.25263 0.96429 0.95863 1.00374 1.69611 1.33332 1.14975 1.36377 0.85864 0.77651 0.78692 0.82133 1.20381 1.20936 1.19421 1.23504 1.00114 0.86914 0.96525 1.22367 1.00688 0.98514 0.95141 0.92841 0.92352 0.92652 0.91373 0.91381 0.91628 0.91985 0.91484 0.75925 0.90630 0.90292 0.91570 0.91567 0.90877 0.91220 0.89194 0.93349 0.77508 0.91862 0.93727 0.88063 0.91068 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.10 -0.99 4.75 -26.73 -0.13 -1.11 16 3 C -0.11 -1.06 2.72 -91.77 -0.25 -1.31 16 4 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.15 -1.39 8.85 37.16 0.33 -1.06 16 6 C 0.52 6.44 6.47 -10.99 -0.07 6.36 16 7 O -0.55 -8.45 14.07 5.56 0.08 -8.38 16 8 N -0.70 -8.22 4.32 -46.52 -0.20 -8.42 16 9 C 0.17 2.07 0.42 -130.65 -0.06 2.02 16 10 C -0.12 -1.29 6.13 -25.54 -0.16 -1.44 16 11 C -0.12 -1.04 6.72 -23.49 -0.16 -1.20 16 12 C -0.10 -1.04 6.32 -26.74 -0.17 -1.21 16 13 C 0.04 0.52 1.79 -68.39 -0.12 0.39 16 14 H 0.04 0.57 7.71 -51.93 -0.40 0.17 16 15 N -0.48 -7.51 5.01 -225.25 -1.13 -8.63 16 16 C 0.04 0.61 5.41 -4.97 -0.03 0.59 16 17 C 0.44 10.14 7.42 -10.98 -0.08 10.06 16 18 O -0.58 -15.02 13.63 5.55 0.08 -14.95 16 19 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 20 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 24 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 C 0.06 0.94 5.17 -0.93 0.00 0.94 16 29 C -0.13 -1.82 6.17 -26.00 -0.16 -1.98 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.70 7.96 -51.93 -0.41 0.29 16 35 H 0.06 0.65 7.57 -51.93 -0.39 0.26 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.53 6.56 -51.93 -0.34 0.19 16 38 H 0.40 4.53 7.41 -40.82 -0.30 4.22 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.96 7.01 -51.93 -0.36 0.60 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.73 7.77 -51.93 -0.40 0.32 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 46 H 0.05 0.78 7.90 -51.93 -0.41 0.37 16 47 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.04 0.79 7.68 -51.93 -0.40 0.39 16 50 H 0.10 1.99 6.92 -51.93 -0.36 1.63 16 51 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 52 H 0.08 1.25 7.03 -51.93 -0.37 0.88 16 LS Contribution 400.45 15.07 6.03 6.03 Total: -1.00 -30.87 400.45 -9.41 -40.28 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -8.97 Total: 13.47 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -0.94 Total: 2.40 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.66 Total: -54.75 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.15 Total: -23.32 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.87 -9.41 -40.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284029174.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.029 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds