Wall clock time and date at job start Tue Mar 31 2020 20:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46904 * 2 1 4 4 H 1.09000 * 109.47086 * 55.00302 * 3 2 1 5 5 C 1.52997 * 109.47408 * 295.00246 * 3 2 1 6 6 C 1.50705 * 109.47337 * 174.99704 * 3 2 1 7 7 O 1.21280 * 119.99359 * 0.02562 * 6 3 2 8 8 N 1.34770 * 120.00042 * 180.02562 * 6 3 2 9 9 C 1.46500 * 119.99647 * 180.02562 * 8 6 3 10 10 C 1.51960 * 111.00005 * 289.93085 * 9 8 6 11 11 C 1.56201 * 101.92078 * 287.77804 * 10 9 8 12 12 C 1.55859 * 105.91456 * 334.87510 * 11 10 9 13 13 C 1.49902 * 104.24886 * 353.51674 * 12 11 10 14 14 H 1.08999 * 108.29886 * 281.49874 * 13 12 11 15 15 N 1.43891 * 127.90734 * 149.56509 * 13 12 11 16 16 C 1.46901 * 110.99857 * 78.53723 * 15 13 12 17 17 C 1.50702 * 109.46594 * 169.99915 * 16 15 13 18 18 O 1.21284 * 120.00473 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99340 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99509 * 180.02562 * 19 17 16 21 21 H 1.07990 * 120.00228 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99637 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00071 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99673 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46847 * 90.00132 * 24 22 20 26 26 H 1.48497 * 109.46838 * 209.99756 * 24 22 20 27 27 H 1.48498 * 109.47348 * 329.99825 * 24 22 20 28 28 C 1.49401 * 103.27023 * 197.77185 * 15 13 12 29 29 C 1.51485 * 111.05476 * 70.05994 * 9 8 6 30 30 H 1.08998 * 109.47682 * 299.99944 * 1 2 3 31 31 H 1.09001 * 109.46880 * 60.00107 * 1 2 3 32 32 H 1.09004 * 109.46902 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47225 * 240.00677 * 2 1 3 34 34 H 1.09001 * 109.46880 * 119.99893 * 2 1 3 35 35 H 1.08995 * 109.47023 * 180.02562 * 5 3 2 36 36 H 1.09005 * 109.46803 * 299.99375 * 5 3 2 37 37 H 1.08998 * 109.47251 * 59.99754 * 5 3 2 38 38 H 0.96994 * 120.00286 * 0.02562 * 8 6 3 39 39 H 1.08994 * 110.91369 * 169.64038 * 10 9 8 40 40 H 1.09006 * 110.99120 * 45.94196 * 10 9 8 41 41 H 1.09002 * 110.17318 * 215.74165 * 11 10 9 42 42 H 1.08996 * 110.17276 * 94.00740 * 11 10 9 43 43 H 1.09004 * 110.47689 * 112.21269 * 12 11 10 44 44 H 1.09007 * 110.47526 * 234.82365 * 12 11 10 45 45 H 1.08996 * 109.47084 * 289.99951 * 16 15 13 46 46 H 1.09003 * 109.47073 * 50.00427 * 16 15 13 47 47 H 0.96999 * 120.00527 * 359.97438 * 19 17 16 48 48 H 0.97005 * 120.00105 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.79259 * 266.75664 * 28 15 13 50 50 H 1.09002 * 110.33454 * 145.28822 * 28 15 13 51 51 H 1.08998 * 110.67874 * 203.09996 * 29 9 8 52 52 H 1.09003 * 110.67293 * 326.08761 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4445 0.1239 7 8 4.1450 0.3953 0.2038 8 7 4.2147 2.6120 0.1459 9 6 5.6748 2.6137 0.2658 10 6 6.1079 2.1688 1.6528 11 6 5.7137 3.4030 2.5252 12 6 5.7137 4.6265 1.5597 13 6 6.2509 4.0798 0.2714 14 1 7.3345 4.0011 0.3584 15 7 5.9442 4.5091 -1.0673 16 6 6.6779 5.7354 -1.4079 17 6 6.5281 6.0176 -2.8807 18 8 5.8749 5.2705 -3.5780 19 7 7.1208 7.0997 -3.4231 20 6 6.9841 7.3567 -4.7628 21 1 6.4019 6.6920 -5.3835 22 6 7.5948 8.4727 -5.3219 23 7 8.3029 9.2818 -4.5665 24 14 7.4091 8.8225 -7.1475 25 1 6.2130 9.6742 -7.3691 26 1 8.6182 9.5290 -7.6415 27 1 7.2486 7.5425 -7.8830 28 6 6.3947 3.3591 -1.9079 29 6 6.3254 2.0947 -1.0000 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9989 3.1541 -1.3074 36 1 2.0699 1.5877 -2.1491 37 1 0.5489 2.1253 -1.3969 38 1 3.7323 3.4510 0.0824 39 1 7.1833 1.9949 1.6875 40 1 5.5607 1.2797 1.9663 41 1 6.4453 3.5510 3.3195 42 1 4.7206 3.2604 2.9513 43 1 4.7001 5.0029 1.4211 44 1 6.3648 5.4132 1.9410 45 1 6.2752 6.5707 -0.8351 46 1 7.7333 5.6057 -1.1684 47 1 7.6435 7.6970 -2.8655 48 1 8.7295 10.0607 -4.9569 49 1 7.4192 3.5246 -2.2412 50 1 5.7366 3.2381 -2.7684 51 1 7.3258 1.7157 -0.7910 52 1 5.7103 1.3210 -1.4594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284029174.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:12 Heat of formation + Delta-G solvation = -87.608328 kcal Electronic energy + Delta-G solvation = -31031.084960 eV Core-core repulsion = 27029.353859 eV Total energy + Delta-G solvation = -4001.731100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.39032 -40.45176 -39.67922 -36.65210 -36.22690 -35.72037 -34.46154 -33.32839 -32.49151 -30.41186 -29.54304 -27.65048 -27.53839 -26.15608 -25.78198 -23.31245 -22.57410 -21.45784 -20.81819 -20.62128 -20.14878 -19.74261 -18.18788 -17.82954 -17.16848 -16.72141 -16.56308 -16.43971 -16.20540 -15.89452 -15.69473 -15.63384 -15.31886 -14.87907 -14.49375 -14.35309 -14.20994 -14.11378 -13.58170 -13.54012 -13.34142 -13.27968 -13.00697 -12.91972 -12.77406 -12.60388 -12.53764 -12.44949 -12.42645 -12.20229 -12.13964 -12.10431 -11.85962 -11.68740 -11.56750 -11.48998 -11.45238 -11.19494 -10.51567 -10.24948 -10.01785 -9.93518 -9.40153 -8.47415 -5.95652 1.36685 1.40728 1.52983 1.76525 2.04349 2.23221 2.28607 2.69650 2.94510 3.19782 3.29425 3.72972 3.75647 3.88954 3.91371 4.01885 4.03421 4.11878 4.23882 4.30695 4.35723 4.43454 4.46098 4.47447 4.53498 4.54370 4.58582 4.64579 4.74441 4.75691 4.79977 4.85376 4.96988 5.02426 5.05639 5.06489 5.14872 5.17366 5.19310 5.22825 5.30298 5.38725 5.39595 5.40789 5.51626 5.67269 5.79721 5.94797 6.15057 6.59781 6.70701 7.12402 7.38777 7.55433 8.11068 8.70013 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014516 B = 0.002836 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.496997 B = 9870.220609 C =11102.906601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.104 4.104 4 H 0.119 0.881 5 C -0.142 4.142 6 C 0.514 3.486 7 O -0.581 6.581 8 N -0.691 5.691 9 C 0.164 3.836 10 C -0.115 4.115 11 C -0.104 4.104 12 C -0.099 4.099 13 C 0.043 3.957 14 H 0.047 0.953 15 N -0.481 5.481 16 C 0.047 3.953 17 C 0.440 3.560 18 O -0.614 6.614 19 N -0.573 5.573 20 C -0.330 4.330 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.274 1.274 28 C 0.063 3.937 29 C -0.120 4.120 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.409 0.591 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.115 0.885 46 H 0.066 0.934 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.029 0.971 50 H 0.063 0.937 51 H 0.083 0.917 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.168 -10.920 17.109 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.139 4.139 3 C -0.125 4.125 4 H 0.137 0.863 5 C -0.199 4.199 6 C 0.302 3.698 7 O -0.461 6.461 8 N -0.342 5.342 9 C 0.076 3.924 10 C -0.153 4.153 11 C -0.142 4.142 12 C -0.137 4.137 13 C -0.067 4.067 14 H 0.065 0.935 15 N -0.204 5.204 16 C -0.084 4.084 17 C 0.228 3.772 18 O -0.500 6.500 19 N -0.211 5.211 20 C -0.460 4.460 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.199 1.199 28 C -0.064 4.064 29 C -0.159 4.159 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.246 0.754 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.133 0.867 46 H 0.084 0.916 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.048 0.952 50 H 0.081 0.919 51 H 0.101 0.899 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.609 -11.819 16.569 22.506 hybrid contribution 1.288 0.820 -1.158 1.916 sum -8.321 -10.998 15.411 20.681 Atomic orbital electron populations 1.21815 0.93689 1.02360 1.02721 1.21279 0.96787 0.93985 1.01866 1.21371 0.90093 0.99550 1.01473 0.86334 1.21800 1.03191 1.00086 0.94867 1.21127 0.90941 0.83081 0.74644 1.90644 1.71238 1.32636 1.51557 1.45712 1.06168 1.08927 1.73436 1.21197 0.81017 0.96044 0.94100 1.22224 1.01660 0.98799 0.92642 1.22777 1.02621 0.91549 0.97252 1.21464 1.02464 0.98446 0.91321 1.22597 0.98956 0.94635 0.90515 0.93482 1.63630 1.53027 1.01587 1.02203 1.22028 0.98114 0.95498 0.92716 1.20699 0.83156 0.82660 0.90700 1.90494 1.45309 1.49921 1.64251 1.41920 1.46382 1.23660 1.09128 1.19623 1.31477 1.09463 0.85419 0.90397 1.26005 0.95683 0.95186 1.04346 1.69667 1.33397 1.15185 1.37873 0.84962 0.78172 0.78286 0.77144 1.19583 1.19600 1.19912 1.23262 0.98076 0.88817 0.96277 1.22255 1.01332 0.96670 0.95684 0.91495 0.91893 0.92199 0.93387 0.92308 0.92087 0.94066 0.89363 0.75398 0.89846 0.91615 0.89645 0.90788 0.90462 0.89698 0.86740 0.91571 0.77054 0.91325 0.95236 0.91853 0.89886 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.67 71.98 0.70 -1.26 16 2 C -0.10 -1.88 4.75 30.60 0.15 -1.74 16 3 C -0.10 -1.90 2.72 -11.54 -0.03 -1.93 16 4 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 5 C -0.14 -2.62 8.85 71.98 0.64 -1.98 16 6 C 0.51 12.68 6.47 87.66 0.57 13.25 16 7 O -0.58 -18.31 14.07 -3.03 -0.04 -18.36 16 8 N -0.69 -15.83 4.32 -419.50 -1.81 -17.64 16 9 C 0.16 3.92 0.42 4.36 0.00 3.92 16 10 C -0.11 -2.27 6.13 31.36 0.19 -2.08 16 11 C -0.10 -1.53 6.72 32.70 0.22 -1.31 16 12 C -0.10 -1.66 6.32 30.59 0.19 -1.46 16 13 C 0.04 0.99 1.79 46.08 0.08 1.08 16 14 H 0.05 1.10 7.71 -2.39 -0.02 1.08 16 15 N -0.48 -14.88 5.01 -866.56 -4.34 -19.22 16 16 C 0.05 1.60 5.41 85.56 0.46 2.06 16 17 C 0.44 20.53 7.42 87.66 0.65 21.18 16 18 O -0.61 -33.06 13.63 -3.04 -0.04 -33.10 16 19 N -0.57 -29.06 5.29 -306.99 -1.62 -30.68 16 20 C -0.33 -18.60 9.68 84.04 0.81 -17.79 16 21 H 0.08 4.69 7.16 -2.92 -0.02 4.67 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.34 13.05 21.66 0.28 -49.05 16 24 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 28 C 0.06 2.19 5.17 86.79 0.45 2.64 16 29 C -0.12 -3.49 6.17 31.07 0.19 -3.30 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.77 6.56 -2.39 -0.02 0.76 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.20 7.96 -2.39 -0.02 1.18 16 35 H 0.06 1.18 7.57 -2.39 -0.02 1.16 16 36 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.09 1.25 6.56 -2.39 -0.02 1.23 16 38 H 0.41 8.64 7.41 -92.71 -0.69 7.96 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.52 7.01 -2.38 -0.02 1.50 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.27 7.77 -2.38 -0.02 1.25 16 44 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 46 H 0.07 2.03 7.90 -2.39 -0.02 2.01 16 47 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 48 H 0.28 13.93 8.31 -92.70 -0.77 13.16 16 49 H 0.03 1.08 7.68 -2.39 -0.02 1.07 16 50 H 0.06 2.67 6.92 -2.39 -0.02 2.65 16 51 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 52 H 0.06 1.99 7.03 -2.39 -0.02 1.98 16 Total: -1.00 -69.01 400.45 -0.31 -69.32 By element: Atomic # 1 Polarization: 43.27 SS G_CDS: -0.50 Total: 42.77 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 5.74 Total: 11.09 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -7.49 Total: -116.59 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.08 Total: -51.45 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -69.01 -0.31 -69.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284029174.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.287 kcal (2) G-P(sol) polarization free energy of solvation -69.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds