Wall clock time and date at job start Tue Mar 31 2020 20:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.52993 * 109.47050 * 2 1 4 4 H 1.08999 * 109.47460 * 54.99948 * 3 2 1 5 5 C 1.52999 * 109.47410 * 294.99844 * 3 2 1 6 6 C 1.50701 * 109.46804 * 174.99907 * 3 2 1 7 7 O 1.21273 * 120.00161 * 0.02562 * 6 3 2 8 8 N 1.34781 * 119.99659 * 180.02562 * 6 3 2 9 9 C 1.46504 * 119.99536 * 180.02562 * 8 6 3 10 10 C 1.54104 * 112.36405 * 299.64541 * 9 8 6 11 11 C 1.54885 * 104.15735 * 261.89500 * 10 9 8 12 12 C 1.56537 * 102.80304 * 321.36832 * 11 10 9 13 13 C 1.54265 * 103.61420 * 37.96258 * 12 11 10 14 14 H 1.09002 * 111.35739 * 98.89926 * 13 12 11 15 15 N 1.47923 * 108.70723 * 221.93491 * 13 12 11 16 16 C 1.46905 * 110.99656 * 260.70632 * 15 13 12 17 17 C 1.50701 * 109.46685 * 169.99940 * 16 15 13 18 18 O 1.21286 * 120.00483 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99700 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99934 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00416 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99956 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99837 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99887 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46965 * 90.00241 * 24 22 20 26 26 H 1.48504 * 109.47194 * 209.99816 * 24 22 20 27 27 H 1.48497 * 109.47483 * 330.00192 * 24 22 20 28 28 C 1.48480 * 105.98958 * 140.09228 * 15 13 12 29 29 C 1.54448 * 111.19185 * 62.90440 * 9 8 6 30 30 H 1.09005 * 109.46754 * 59.99811 * 1 2 3 31 31 H 1.08996 * 109.47220 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46909 * 300.00480 * 1 2 3 33 33 H 1.08993 * 109.46594 * 239.99864 * 2 1 3 34 34 H 1.08999 * 109.46458 * 119.99881 * 2 1 3 35 35 H 1.08996 * 109.47492 * 180.02562 * 5 3 2 36 36 H 1.08999 * 109.46894 * 300.00451 * 5 3 2 37 37 H 1.08996 * 109.46866 * 60.00063 * 5 3 2 38 38 H 0.96992 * 120.00343 * 359.97438 * 8 6 3 39 39 H 1.09004 * 110.49597 * 20.55787 * 10 9 8 40 40 H 1.08996 * 110.49803 * 143.22852 * 10 9 8 41 41 H 1.09006 * 110.75827 * 79.85856 * 11 10 9 42 42 H 1.09002 * 110.76427 * 203.23239 * 11 10 9 43 43 H 1.08999 * 110.71669 * 279.54717 * 12 11 10 44 44 H 1.08998 * 110.94771 * 156.48719 * 12 11 10 45 45 H 1.08996 * 109.47435 * 289.99906 * 16 15 13 46 46 H 1.08998 * 109.47013 * 50.00125 * 16 15 13 47 47 H 0.97002 * 119.99998 * 0.02562 * 19 17 16 48 48 H 0.97003 * 119.99853 * 179.97438 * 23 22 20 49 49 H 1.08994 * 110.67375 * 79.22518 * 28 15 13 50 50 H 1.09006 * 110.66648 * 202.18872 * 28 15 13 51 51 H 1.09003 * 110.72054 * 340.32284 * 29 9 8 52 52 H 1.09001 * 110.72063 * 217.05385 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 3.5420 1.4442 0.1239 7 8 4.1451 0.3951 0.2037 8 7 4.2149 2.6118 0.1458 9 6 5.6751 2.6134 0.2657 10 6 6.1573 1.9446 1.5676 11 6 6.4182 3.1308 2.5288 12 6 7.0430 4.2115 1.5844 13 6 6.2488 4.0497 0.2718 14 1 5.4570 4.7946 0.1925 15 7 7.1895 4.1404 -0.8662 16 6 7.1663 5.4827 -1.4626 17 6 8.2992 5.6142 -2.4477 18 8 9.0515 4.6815 -2.6349 19 7 8.4757 6.7681 -3.1215 20 6 9.5066 6.8879 -4.0173 21 1 10.1771 6.0576 -4.1834 22 6 9.6890 8.0777 -4.7116 23 7 8.8735 9.0881 -4.5091 24 14 11.0932 8.2407 -5.9326 25 1 10.6309 7.8154 -7.2782 26 1 11.5400 9.6559 -5.9872 27 1 12.2250 7.3805 -5.5033 28 6 6.7471 3.1154 -1.8452 29 6 6.3356 1.9220 -0.9472 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.9991 3.1540 -1.3075 36 1 2.0700 1.5874 -2.1491 37 1 0.5491 2.1252 -1.3969 38 1 3.7327 3.4508 0.0816 39 1 5.3836 1.2905 1.9699 40 1 7.0769 1.3864 1.3920 41 1 5.4847 3.4880 2.9639 42 1 7.1257 2.8481 3.3083 43 1 8.1012 4.0113 1.4163 44 1 6.9043 5.2127 1.9924 45 1 6.2177 5.6353 -1.9773 46 1 7.2784 6.2309 -0.6780 47 1 7.8738 7.5139 -2.9721 48 1 9.0010 9.9188 -4.9935 49 1 5.8946 3.4757 -2.4208 50 1 7.5668 2.8370 -2.5076 51 1 5.6204 1.2805 -1.4621 52 1 7.2118 1.3528 -0.6367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284029176.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:16 Heat of formation + Delta-G solvation = -102.706256 kcal Electronic energy + Delta-G solvation = -30604.800487 eV Core-core repulsion = 26602.414692 eV Total energy + Delta-G solvation = -4002.385796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.97584 -40.40945 -39.57173 -36.49528 -36.17719 -35.65148 -34.72005 -33.29908 -32.43475 -30.49205 -29.54774 -27.72979 -27.27764 -26.10778 -25.57888 -23.53006 -22.25230 -21.63566 -21.02405 -20.41040 -20.30631 -19.88188 -18.35500 -17.64443 -17.39166 -16.70115 -16.46800 -16.37845 -16.15361 -15.93733 -15.75550 -15.34618 -15.12854 -14.96331 -14.72958 -14.39288 -14.24479 -14.07411 -13.60095 -13.55317 -13.37139 -13.07976 -12.94678 -12.85750 -12.70321 -12.60335 -12.53095 -12.41659 -12.37290 -12.15650 -12.11912 -11.95883 -11.90053 -11.78456 -11.66460 -11.57301 -11.49093 -11.44223 -10.59816 -10.31462 -10.01786 -9.98281 -9.35902 -8.46183 -5.94215 1.37241 1.40980 1.53472 1.68889 2.07198 2.09703 2.29323 2.80324 3.15149 3.20726 3.41002 3.58944 3.71777 3.80144 3.87920 4.01017 4.11272 4.16404 4.22431 4.26499 4.35817 4.38242 4.46253 4.47830 4.53133 4.54533 4.62517 4.66098 4.73962 4.74802 4.81338 4.90781 4.96721 4.99379 5.04092 5.04760 5.12222 5.13221 5.19153 5.23346 5.24136 5.38315 5.40943 5.44290 5.50751 5.60780 5.83807 5.98107 6.13424 6.59204 6.62287 7.14457 7.31073 7.58022 8.14806 8.71282 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017105 B = 0.002486 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.522112 B =11262.534009 C =12082.492372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.103 4.103 4 H 0.121 0.879 5 C -0.144 4.144 6 C 0.514 3.486 7 O -0.572 6.572 8 N -0.705 5.705 9 C 0.173 3.827 10 C -0.113 4.113 11 C -0.111 4.111 12 C -0.108 4.108 13 C 0.064 3.936 14 H 0.088 0.912 15 N -0.501 5.501 16 C 0.050 3.950 17 C 0.442 3.558 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.330 4.330 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.275 1.275 28 C 0.045 3.955 29 C -0.110 4.110 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.412 0.588 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.113 0.887 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.043 0.957 50 H 0.057 0.943 51 H 0.067 0.933 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.699 -9.159 13.752 25.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.125 4.125 4 H 0.139 0.861 5 C -0.202 4.202 6 C 0.302 3.698 7 O -0.451 6.451 8 N -0.357 5.357 9 C 0.085 3.915 10 C -0.151 4.151 11 C -0.149 4.149 12 C -0.147 4.147 13 C -0.045 4.045 14 H 0.106 0.894 15 N -0.225 5.225 16 C -0.082 4.082 17 C 0.230 3.770 18 O -0.502 6.502 19 N -0.213 5.213 20 C -0.460 4.460 21 H 0.094 0.906 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.200 1.200 28 C -0.083 4.083 29 C -0.150 4.150 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.250 0.750 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.131 0.869 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.061 0.939 50 H 0.076 0.924 51 H 0.086 0.914 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.235 -10.402 13.757 25.099 hybrid contribution -0.119 0.932 -1.314 1.616 sum -18.354 -9.469 12.443 24.111 Atomic orbital electron populations 1.21815 0.93649 1.02309 1.02811 1.21303 0.96829 0.94254 1.01858 1.21393 0.89455 0.99536 1.02070 0.86107 1.21844 1.03469 1.00340 0.94505 1.21253 0.91080 0.83022 0.74474 1.90691 1.71216 1.32772 1.50428 1.45960 1.05841 1.09378 1.74544 1.21353 0.80097 0.94722 0.95286 1.22520 1.00691 0.97838 0.94079 1.22767 1.01284 0.93912 0.96944 1.22667 0.99530 0.99956 0.92518 1.23348 0.93777 0.94960 0.92422 0.89409 1.64570 1.47841 1.02748 1.07363 1.21947 0.95905 0.92983 0.97330 1.20775 0.88548 0.83020 0.84695 1.90492 1.49807 1.40541 1.69387 1.41915 1.28573 1.13517 1.37302 1.19611 1.08133 0.99832 1.18423 0.90607 1.25989 1.00874 0.94414 0.99963 1.69664 1.38716 1.04317 1.43403 0.84970 0.77805 0.77766 0.78055 1.19707 1.19429 1.19991 1.23138 0.98034 0.92307 0.94781 1.22735 0.99903 0.96385 0.95930 0.91548 0.92476 0.91570 0.93232 0.92676 0.91142 0.93679 0.89342 0.75049 0.91536 0.91930 0.89872 0.90550 0.91914 0.89682 0.91027 0.86903 0.76995 0.91333 0.93889 0.92397 0.91432 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.67 71.99 0.70 -0.76 16 2 C -0.10 -1.57 4.75 30.60 0.15 -1.42 16 3 C -0.10 -1.35 2.72 -11.54 -0.03 -1.38 16 4 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 5 C -0.14 -1.55 8.85 71.98 0.64 -0.91 16 6 C 0.51 10.34 6.19 87.66 0.54 10.88 16 7 O -0.57 -16.35 13.45 -3.01 -0.04 -16.39 16 8 N -0.70 -12.39 5.14 -416.46 -2.14 -14.53 16 9 C 0.17 3.94 0.82 5.04 0.00 3.94 16 10 C -0.11 -2.54 5.67 31.61 0.18 -2.36 16 11 C -0.11 -1.96 6.95 32.47 0.23 -1.74 16 12 C -0.11 -2.28 6.64 32.26 0.21 -2.07 16 13 C 0.06 1.45 3.01 45.72 0.14 1.58 16 14 H 0.09 1.57 7.35 -2.39 -0.02 1.55 16 15 N -0.50 -16.11 4.37 -858.90 -3.76 -19.87 16 16 C 0.05 1.68 5.22 85.56 0.45 2.13 16 17 C 0.44 21.13 7.61 87.66 0.67 21.79 16 18 O -0.62 -34.72 14.62 -3.05 -0.04 -34.76 16 19 N -0.58 -29.49 5.29 -306.98 -1.62 -31.11 16 20 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 21 H 0.08 4.66 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 23 N -0.92 -49.44 13.05 21.66 0.28 -49.15 16 24 Si 0.99 43.26 29.55 68.60 2.03 45.28 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 28 C 0.05 1.51 5.93 86.65 0.51 2.03 16 29 C -0.11 -3.24 5.85 31.74 0.19 -3.05 16 30 H 0.07 0.54 6.57 -2.38 -0.02 0.53 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 0.99 7.96 -2.39 -0.02 0.97 16 35 H 0.07 0.61 7.56 -2.39 -0.02 0.60 16 36 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 0.65 6.56 -2.39 -0.02 0.63 16 38 H 0.41 4.84 7.69 -92.71 -0.71 4.13 16 39 H 0.07 1.59 6.67 -2.38 -0.02 1.58 16 40 H 0.06 1.61 7.27 -2.39 -0.02 1.59 16 41 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.67 7.97 -2.39 -0.02 1.65 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.07 2.11 7.84 -2.39 -0.02 2.09 16 46 H 0.11 3.28 8.08 -2.39 -0.02 3.26 16 47 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 48 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 49 H 0.04 1.35 7.82 -2.39 -0.02 1.33 16 50 H 0.06 2.41 7.08 -2.38 -0.02 2.39 16 51 H 0.07 2.06 6.83 -2.39 -0.02 2.04 16 52 H 0.07 2.17 7.27 -2.39 -0.02 2.15 16 Total: -1.00 -72.79 400.86 0.03 -72.76 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -0.52 Total: 37.38 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 5.84 Total: 10.39 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -7.24 Total: -114.66 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -0.09 Total: -51.15 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -72.79 0.03 -72.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284029176.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.948 kcal (2) G-P(sol) polarization free energy of solvation -72.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds