Wall clock time and date at job start Tue Mar 31 2020 20:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47263 * 2 1 4 4 H 1.09004 * 109.87688 * 56.71859 * 3 2 1 5 5 C 1.54314 * 109.89153 * 295.51673 * 3 2 1 6 6 H 1.08990 * 110.70782 * 336.69154 * 5 3 2 7 7 N 1.46505 * 110.70544 * 99.92866 * 5 3 2 8 8 C 1.34767 * 119.99731 * 205.00192 * 7 5 3 9 9 O 1.21279 * 120.00642 * 359.97438 * 8 7 5 10 10 C 1.50701 * 119.99865 * 179.97438 * 8 7 5 11 11 H 1.09001 * 115.55125 * 34.27782 * 10 8 7 12 12 C 1.53002 * 117.50135 * 248.60613 * 10 8 7 13 13 C 1.52999 * 60.00158 * 252.50740 * 12 10 8 14 14 C 1.52999 * 117.49888 * 252.50844 * 13 12 10 15 15 C 1.52999 * 117.49929 * 107.48458 * 13 12 10 16 16 C 1.55148 * 103.01844 * 218.30858 * 5 3 2 17 17 C 1.54908 * 101.65179 * 35.65620 * 16 5 3 18 18 N 1.47449 * 109.88708 * 177.74552 * 3 2 1 19 19 C 1.46900 * 110.99834 * 356.15009 * 18 3 2 20 20 C 1.50704 * 109.46734 * 187.46708 * 19 18 3 21 21 O 1.21287 * 120.00359 * 0.02562 * 20 19 18 22 22 N 1.34776 * 119.99695 * 180.02562 * 20 19 18 23 23 C 1.37094 * 120.00011 * 180.02562 * 22 20 19 24 24 H 1.08006 * 119.99821 * 0.02562 * 23 22 20 25 25 C 1.38956 * 120.00135 * 179.97438 * 23 22 20 26 26 N 1.31408 * 119.99611 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99743 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.46834 * 90.00432 * 27 25 23 29 29 H 1.48495 * 109.47135 * 210.00026 * 27 25 23 30 30 H 1.48500 * 109.47470 * 330.00509 * 27 25 23 31 31 H 1.09001 * 109.47371 * 55.96438 * 1 2 3 32 32 H 1.09007 * 109.46457 * 295.96909 * 1 2 3 33 33 H 1.08995 * 109.47387 * 175.96957 * 1 2 3 34 34 H 1.08997 * 109.47581 * 120.00669 * 2 1 3 35 35 H 1.09005 * 109.47007 * 240.00647 * 2 1 3 36 36 H 0.97001 * 119.99887 * 24.99832 * 7 5 3 37 37 H 1.09005 * 117.49422 * 0.02562 * 12 10 8 38 38 H 1.09000 * 117.49948 * 144.99373 * 12 10 8 39 39 H 1.09006 * 109.47131 * 128.62282 * 14 13 12 40 40 H 1.08996 * 109.46943 * 248.61716 * 14 13 12 41 41 H 1.08998 * 109.47145 * 8.62079 * 14 13 12 42 42 H 1.08999 * 109.47248 * 351.37984 * 15 13 12 43 43 H 1.09005 * 109.47118 * 111.37751 * 15 13 12 44 44 H 1.08998 * 109.47098 * 231.38167 * 15 13 12 45 45 H 1.08995 * 110.99011 * 277.56074 * 16 5 3 46 46 H 1.08996 * 111.01664 * 153.75985 * 16 5 3 47 47 H 1.09000 * 110.36915 * 204.10186 * 17 16 5 48 48 H 1.09000 * 110.37429 * 81.75416 * 17 16 5 49 49 H 1.08997 * 109.47472 * 307.47290 * 19 18 3 50 50 H 1.09007 * 109.46910 * 67.47231 * 19 18 3 51 51 H 0.97004 * 120.00418 * 359.97438 * 22 20 19 52 52 H 0.97003 * 119.99473 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6332 1.9794 0.8570 5 6 1.6257 2.1459 -1.3095 6 1 1.4426 1.4159 -2.0978 7 7 0.4448 2.9860 -1.0951 8 6 -0.3714 3.2771 -2.1271 9 8 -0.1283 2.8441 -3.2336 10 6 -1.5865 4.1409 -1.9064 11 1 -1.4745 4.9281 -1.1609 12 6 -2.9585 3.4751 -2.0302 13 6 -2.4734 4.4356 -3.1179 14 6 -3.1353 5.8130 -3.1905 15 6 -2.0587 3.8308 -4.4607 16 6 2.8649 3.0169 -1.6456 17 6 4.0249 2.1078 -1.1686 18 7 3.5135 1.4535 0.0545 19 6 4.0457 0.0905 0.1843 20 6 5.5328 0.1523 0.4207 21 8 6.0940 1.2261 0.4761 22 7 6.2391 -0.9857 0.5705 23 6 7.5918 -0.9295 0.7861 24 1 8.0914 0.0267 0.8362 25 6 8.3200 -2.1028 0.9411 26 7 7.7120 -3.2662 0.8806 27 14 10.1631 -2.0261 1.2355 28 1 10.4289 -1.9615 2.6951 29 1 10.8058 -3.2388 0.6686 30 1 10.7197 -0.8171 0.5769 31 1 -0.3634 0.5752 -0.8516 32 1 -0.3632 0.4500 0.9240 33 1 -0.3634 -1.0251 -0.0722 34 1 1.8934 -0.5139 0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 0.2505 3.3327 -0.2102 37 1 -2.9822 2.4122 -2.2708 38 1 -3.7491 3.8243 -1.3660 39 1 -2.3663 6.5856 -3.2018 40 1 -3.7325 5.8817 -4.0997 41 1 -3.7785 5.9533 -2.3218 42 1 -2.0356 2.7442 -4.3782 43 1 -2.7768 4.1217 -5.2275 44 1 -1.0684 4.1955 -4.7331 45 1 2.8473 3.9528 -1.0872 46 1 2.9315 3.2051 -2.7171 47 1 4.9062 2.7066 -0.9385 48 1 4.2595 1.3620 -1.9281 49 1 3.5645 -0.4090 1.0252 50 1 3.8461 -0.4662 -0.7314 51 1 5.7903 -1.8446 0.5266 52 1 8.2205 -4.0853 0.9884 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316729556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:41 Heat of formation + Delta-G solvation = -43.119271 kcal Electronic energy + Delta-G solvation = -30055.826681 eV Core-core repulsion = 26056.024771 eV Total energy + Delta-G solvation = -3999.801910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.73413 -39.66460 -37.90744 -37.15532 -34.53433 -33.85820 -33.27142 -31.37128 -30.92461 -29.66297 -27.72711 -27.60374 -26.58910 -24.58151 -24.12814 -22.81612 -21.27960 -20.72443 -20.31167 -19.29540 -18.65002 -17.74177 -17.29597 -16.76244 -15.99016 -15.68154 -15.17534 -14.91285 -14.71868 -14.55058 -14.36622 -14.18663 -13.93669 -13.83443 -13.73262 -13.42704 -13.01150 -12.89841 -12.81785 -12.60072 -12.30161 -12.19217 -12.09413 -11.96622 -11.84552 -11.53925 -11.49291 -11.38540 -11.19076 -11.05705 -10.98761 -10.91558 -10.54248 -10.42176 -10.37502 -10.19693 -10.19339 -9.64908 -9.47167 -9.10300 -8.41754 -7.95024 -7.84727 -6.39529 -3.80015 2.30868 2.89399 3.19171 3.27601 3.33472 3.43050 3.92688 4.01537 4.23035 4.29077 4.35369 4.44389 4.48640 4.69516 4.76051 4.82110 4.83824 5.05664 5.15138 5.18994 5.23517 5.27402 5.31802 5.33874 5.34867 5.39573 5.51845 5.57384 5.60536 5.61025 5.70083 5.74736 5.76745 5.80845 5.87981 5.90229 5.95548 5.98797 6.06270 6.15408 6.19722 6.27570 6.32088 6.42673 6.53146 7.22902 7.25568 7.36266 7.57253 8.08695 8.09153 8.64561 9.20735 9.57279 10.09411 10.78323 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029982 B = 0.002072 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.676437 B =13509.689143 C =13900.165090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.069 3.931 4 H 0.088 0.912 5 C 0.130 3.870 6 H 0.097 0.903 7 N -0.713 5.713 8 C 0.543 3.457 9 O -0.534 6.534 10 C -0.189 4.189 11 H 0.121 0.879 12 C -0.147 4.147 13 C -0.094 4.094 14 C -0.117 4.117 15 C -0.103 4.103 16 C -0.141 4.141 17 C 0.054 3.946 18 N -0.496 5.496 19 C 0.036 3.964 20 C 0.443 3.557 21 O -0.578 6.578 22 N -0.566 5.566 23 C -0.297 4.297 24 H 0.103 0.897 25 C 0.021 3.979 26 N -0.903 5.903 27 Si 0.930 3.070 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.401 0.599 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.048 0.952 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.043 0.957 49 H 0.093 0.907 50 H 0.051 0.949 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.684 11.643 -4.865 26.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C -0.040 4.040 4 H 0.106 0.894 5 C 0.024 3.976 6 H 0.115 0.885 7 N -0.364 5.364 8 C 0.330 3.670 9 O -0.411 6.411 10 C -0.211 4.211 11 H 0.139 0.861 12 C -0.184 4.184 13 C -0.095 4.095 14 C -0.174 4.174 15 C -0.160 4.160 16 C -0.180 4.180 17 C -0.073 4.073 18 N -0.220 5.220 19 C -0.095 4.095 20 C 0.229 3.771 21 O -0.462 6.462 22 N -0.203 5.203 23 C -0.427 4.427 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.544 5.544 27 Si 0.757 3.243 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.195 1.195 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.235 0.765 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.116 0.884 48 H 0.062 0.938 49 H 0.111 0.889 50 H 0.069 0.931 51 H 0.224 0.776 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.843 12.127 -5.172 26.374 hybrid contribution 0.408 -0.970 0.111 1.058 sum -22.435 11.157 -5.060 25.562 Atomic orbital electron populations 1.21747 0.95497 1.01640 1.01735 1.22211 0.96371 0.96716 1.03116 1.22751 0.89135 0.95633 0.96531 0.89446 1.22320 0.84383 0.92709 0.98164 0.88502 1.45934 1.26165 1.52456 1.11820 1.19651 0.82970 0.80060 0.84353 1.90712 1.73772 1.53073 1.23562 1.22377 0.91152 1.03166 1.04367 0.86074 1.23209 0.94158 0.99193 1.01857 1.21588 0.99727 0.96847 0.91299 1.21402 0.99957 0.93768 1.02263 1.21353 1.00951 1.01051 0.92636 1.23148 0.94197 0.99113 1.01572 1.23012 0.97963 0.96808 0.89555 1.63462 1.03230 1.17222 1.38072 1.22209 0.95703 0.90159 1.01419 1.19786 0.87781 0.85109 0.84466 1.90502 1.71296 1.28708 1.55682 1.41851 1.08373 1.06857 1.63187 1.19689 0.82697 0.94594 1.45702 0.87960 1.25253 1.00571 0.94667 0.97536 1.69613 1.36911 0.97501 1.50382 0.85865 0.82174 0.77747 0.78541 1.20436 1.20978 1.19462 0.92691 0.92757 0.92748 0.90325 0.91483 0.76486 0.88284 0.87903 0.91955 0.91622 0.92302 0.91693 0.93339 0.91358 0.90492 0.90688 0.88357 0.93817 0.88865 0.93102 0.77550 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.76 37.16 0.36 -1.03 16 2 C -0.15 -1.64 4.08 -26.73 -0.11 -1.75 16 3 C 0.07 0.84 3.23 -66.72 -0.22 0.62 16 4 H 0.09 0.99 7.72 -51.93 -0.40 0.59 16 5 C 0.13 1.52 1.94 -66.10 -0.13 1.39 16 6 H 0.10 1.30 7.19 -51.93 -0.37 0.93 16 7 N -0.71 -6.70 4.57 -52.04 -0.24 -6.93 16 8 C 0.54 5.73 7.59 -10.99 -0.08 5.65 16 9 O -0.53 -7.44 12.75 5.56 0.07 -7.37 16 10 C -0.19 -1.48 5.91 -91.77 -0.54 -2.02 16 11 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 12 C -0.15 -1.00 9.52 -26.73 -0.25 -1.25 16 13 C -0.09 -0.73 2.70 -154.51 -0.42 -1.15 16 14 C -0.12 -0.68 9.85 37.16 0.37 -0.32 16 15 C -0.10 -0.97 8.09 37.16 0.30 -0.67 16 16 C -0.14 -1.84 6.76 -24.59 -0.17 -2.01 16 17 C 0.05 0.88 5.64 -2.30 -0.01 0.87 16 18 N -0.50 -8.08 4.91 -224.77 -1.10 -9.18 16 19 C 0.04 0.64 4.17 -4.97 -0.02 0.62 16 20 C 0.44 10.46 7.56 -10.98 -0.08 10.38 16 21 O -0.58 -15.55 14.42 5.55 0.08 -15.47 16 22 N -0.57 -14.36 5.29 -10.96 -0.06 -14.42 16 23 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 24 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 25 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 26 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 27 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 30 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 31 H 0.05 0.55 6.76 -51.93 -0.35 0.20 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.91 6.24 -51.93 -0.32 0.59 16 35 H 0.07 0.81 7.01 -51.93 -0.36 0.44 16 36 H 0.40 2.87 8.37 -40.82 -0.34 2.53 16 37 H 0.10 0.75 8.05 -51.93 -0.42 0.34 16 38 H 0.10 0.51 8.05 -51.93 -0.42 0.09 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.35 7.92 -51.93 -0.41 -0.06 16 41 H 0.06 0.28 7.90 -51.93 -0.41 -0.13 16 42 H 0.06 0.70 7.01 -51.93 -0.36 0.34 16 43 H 0.05 0.38 7.92 -51.93 -0.41 -0.03 16 44 H 0.07 0.76 7.26 -51.93 -0.38 0.39 16 45 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.10 1.85 7.25 -51.93 -0.38 1.48 16 48 H 0.04 0.74 7.67 -51.93 -0.40 0.34 16 49 H 0.09 1.50 6.16 -51.93 -0.32 1.18 16 50 H 0.05 0.84 6.83 -51.93 -0.35 0.48 16 51 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 52 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 405.40 15.07 6.11 6.11 Total: -1.00 -32.16 405.40 -9.47 -41.63 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -8.78 Total: 12.04 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.25 Total: 1.35 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.68 Total: -54.46 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.15 Total: -22.84 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.16 -9.47 -41.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316729556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.490 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds