Wall clock time and date at job start Tue Mar 31 2020 20:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47263 * 2 1 4 4 H 1.09004 * 109.87688 * 56.71859 * 3 2 1 5 5 C 1.54314 * 109.89153 * 295.51673 * 3 2 1 6 6 H 1.08990 * 110.70782 * 336.69154 * 5 3 2 7 7 N 1.46505 * 110.70544 * 99.92866 * 5 3 2 8 8 C 1.34767 * 119.99731 * 205.00192 * 7 5 3 9 9 O 1.21279 * 120.00642 * 359.97438 * 8 7 5 10 10 C 1.50701 * 119.99865 * 179.97438 * 8 7 5 11 11 H 1.09001 * 115.55125 * 34.27782 * 10 8 7 12 12 C 1.53002 * 117.50135 * 248.60613 * 10 8 7 13 13 C 1.52999 * 60.00158 * 252.50740 * 12 10 8 14 14 C 1.52999 * 117.49888 * 252.50844 * 13 12 10 15 15 C 1.52999 * 117.49929 * 107.48458 * 13 12 10 16 16 C 1.55148 * 103.01844 * 218.30858 * 5 3 2 17 17 C 1.54908 * 101.65179 * 35.65620 * 16 5 3 18 18 N 1.47449 * 109.88708 * 177.74552 * 3 2 1 19 19 C 1.46900 * 110.99834 * 356.15009 * 18 3 2 20 20 C 1.50704 * 109.46734 * 187.46708 * 19 18 3 21 21 O 1.21287 * 120.00359 * 0.02562 * 20 19 18 22 22 N 1.34776 * 119.99695 * 180.02562 * 20 19 18 23 23 C 1.37094 * 120.00011 * 180.02562 * 22 20 19 24 24 H 1.08006 * 119.99821 * 0.02562 * 23 22 20 25 25 C 1.38956 * 120.00135 * 179.97438 * 23 22 20 26 26 N 1.31408 * 119.99611 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99743 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.46834 * 90.00432 * 27 25 23 29 29 H 1.48495 * 109.47135 * 210.00026 * 27 25 23 30 30 H 1.48500 * 109.47470 * 330.00509 * 27 25 23 31 31 H 1.09001 * 109.47371 * 55.96438 * 1 2 3 32 32 H 1.09007 * 109.46457 * 295.96909 * 1 2 3 33 33 H 1.08995 * 109.47387 * 175.96957 * 1 2 3 34 34 H 1.08997 * 109.47581 * 120.00669 * 2 1 3 35 35 H 1.09005 * 109.47007 * 240.00647 * 2 1 3 36 36 H 0.97001 * 119.99887 * 24.99832 * 7 5 3 37 37 H 1.09005 * 117.49422 * 0.02562 * 12 10 8 38 38 H 1.09000 * 117.49948 * 144.99373 * 12 10 8 39 39 H 1.09006 * 109.47131 * 128.62282 * 14 13 12 40 40 H 1.08996 * 109.46943 * 248.61716 * 14 13 12 41 41 H 1.08998 * 109.47145 * 8.62079 * 14 13 12 42 42 H 1.08999 * 109.47248 * 351.37984 * 15 13 12 43 43 H 1.09005 * 109.47118 * 111.37751 * 15 13 12 44 44 H 1.08998 * 109.47098 * 231.38167 * 15 13 12 45 45 H 1.08995 * 110.99011 * 277.56074 * 16 5 3 46 46 H 1.08996 * 111.01664 * 153.75985 * 16 5 3 47 47 H 1.09000 * 110.36915 * 204.10186 * 17 16 5 48 48 H 1.09000 * 110.37429 * 81.75416 * 17 16 5 49 49 H 1.08997 * 109.47472 * 307.47290 * 19 18 3 50 50 H 1.09007 * 109.46910 * 67.47231 * 19 18 3 51 51 H 0.97004 * 120.00418 * 359.97438 * 22 20 19 52 52 H 0.97003 * 119.99473 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6332 1.9794 0.8570 5 6 1.6257 2.1459 -1.3095 6 1 1.4426 1.4159 -2.0978 7 7 0.4448 2.9860 -1.0951 8 6 -0.3714 3.2771 -2.1271 9 8 -0.1283 2.8441 -3.2336 10 6 -1.5865 4.1409 -1.9064 11 1 -1.4745 4.9281 -1.1609 12 6 -2.9585 3.4751 -2.0302 13 6 -2.4734 4.4356 -3.1179 14 6 -3.1353 5.8130 -3.1905 15 6 -2.0587 3.8308 -4.4607 16 6 2.8649 3.0169 -1.6456 17 6 4.0249 2.1078 -1.1686 18 7 3.5135 1.4535 0.0545 19 6 4.0457 0.0905 0.1843 20 6 5.5328 0.1523 0.4207 21 8 6.0940 1.2261 0.4761 22 7 6.2391 -0.9857 0.5705 23 6 7.5918 -0.9295 0.7861 24 1 8.0914 0.0267 0.8362 25 6 8.3200 -2.1028 0.9411 26 7 7.7120 -3.2662 0.8806 27 14 10.1631 -2.0261 1.2355 28 1 10.4289 -1.9615 2.6951 29 1 10.8058 -3.2388 0.6686 30 1 10.7197 -0.8171 0.5769 31 1 -0.3634 0.5752 -0.8516 32 1 -0.3632 0.4500 0.9240 33 1 -0.3634 -1.0251 -0.0722 34 1 1.8934 -0.5139 0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 0.2505 3.3327 -0.2102 37 1 -2.9822 2.4122 -2.2708 38 1 -3.7491 3.8243 -1.3660 39 1 -2.3663 6.5856 -3.2018 40 1 -3.7325 5.8817 -4.0997 41 1 -3.7785 5.9533 -2.3218 42 1 -2.0356 2.7442 -4.3782 43 1 -2.7768 4.1217 -5.2275 44 1 -1.0684 4.1955 -4.7331 45 1 2.8473 3.9528 -1.0872 46 1 2.9315 3.2051 -2.7171 47 1 4.9062 2.7066 -0.9385 48 1 4.2595 1.3620 -1.9281 49 1 3.5645 -0.4090 1.0252 50 1 3.8461 -0.4662 -0.7314 51 1 5.7903 -1.8446 0.5266 52 1 8.2205 -4.0853 0.9884 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316729556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:40 Heat of formation + Delta-G solvation = -65.512684 kcal Electronic energy + Delta-G solvation = -30056.797732 eV Core-core repulsion = 26056.024771 eV Total energy + Delta-G solvation = -4000.772961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.68480 -40.77305 -39.53354 -38.03121 -36.02277 -35.40442 -34.29806 -33.28357 -32.22975 -30.32233 -28.71165 -28.32240 -28.05763 -26.12962 -25.18432 -23.70839 -22.47564 -21.74108 -21.39024 -20.45910 -19.94937 -19.55717 -18.12618 -17.93239 -17.43782 -16.85076 -16.51391 -16.25134 -15.98017 -15.62530 -15.59777 -15.49874 -15.08321 -14.94782 -14.51246 -14.48388 -14.21425 -14.00898 -13.82147 -13.46278 -13.44922 -13.36868 -13.31608 -12.99335 -12.90560 -12.80379 -12.67466 -12.47007 -12.41916 -12.23437 -12.14543 -12.11660 -12.07390 -11.97639 -11.56165 -11.43312 -11.14107 -10.85793 -10.41672 -10.28354 -10.02006 -9.99454 -9.23322 -8.46165 -5.94482 1.37526 1.40976 1.52916 1.53690 2.05690 2.07149 2.29169 2.78016 2.82620 3.19890 3.28326 3.52977 3.63341 3.68975 3.75074 3.83921 3.89521 4.11916 4.15519 4.18223 4.21686 4.27820 4.35942 4.41247 4.44231 4.46191 4.50661 4.70675 4.77567 4.83485 4.83765 4.87919 4.90514 5.01340 5.04061 5.09379 5.09767 5.12141 5.12972 5.14518 5.20153 5.32734 5.35296 5.41233 5.51132 5.58661 5.83626 5.98847 6.10156 6.59462 6.61463 7.13700 7.30528 7.57156 8.13259 8.71276 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029982 B = 0.002072 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.676437 B =13509.689143 C =13900.165090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.145 4.145 3 C 0.075 3.925 4 H 0.107 0.893 5 C 0.144 3.856 6 H 0.081 0.919 7 N -0.700 5.700 8 C 0.539 3.461 9 O -0.573 6.573 10 C -0.191 4.191 11 H 0.147 0.853 12 C -0.132 4.132 13 C -0.106 4.106 14 C -0.113 4.113 15 C -0.099 4.099 16 C -0.130 4.130 17 C 0.056 3.944 18 N -0.512 5.512 19 C 0.051 3.949 20 C 0.439 3.561 21 O -0.615 6.615 22 N -0.575 5.575 23 C -0.331 4.331 24 H 0.078 0.922 25 C -0.014 4.014 26 N -0.920 5.920 27 Si 0.992 3.008 28 H -0.270 1.270 29 H -0.271 1.271 30 H -0.274 1.274 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.415 0.585 37 H 0.087 0.913 38 H 0.130 0.870 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.031 0.969 49 H 0.117 0.883 50 H 0.065 0.935 51 H 0.395 0.605 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.936 12.111 -3.685 28.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.183 4.183 3 C -0.034 4.034 4 H 0.125 0.875 5 C 0.037 3.963 6 H 0.099 0.901 7 N -0.352 5.352 8 C 0.327 3.673 9 O -0.453 6.453 10 C -0.211 4.211 11 H 0.165 0.835 12 C -0.169 4.169 13 C -0.107 4.107 14 C -0.170 4.170 15 C -0.156 4.156 16 C -0.169 4.169 17 C -0.072 4.072 18 N -0.236 5.236 19 C -0.080 4.080 20 C 0.227 3.773 21 O -0.501 6.501 22 N -0.213 5.213 23 C -0.461 4.461 24 H 0.096 0.904 25 C -0.214 4.214 26 N -0.562 5.562 27 Si 0.816 3.184 28 H -0.196 1.196 29 H -0.196 1.196 30 H -0.199 1.199 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.253 0.747 37 H 0.106 0.894 38 H 0.148 0.852 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.049 0.951 49 H 0.135 0.865 50 H 0.083 0.917 51 H 0.229 0.771 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.135 12.592 -3.966 28.391 hybrid contribution 1.086 -1.099 -0.297 1.573 sum -24.050 11.493 -4.263 26.994 Atomic orbital electron populations 1.21669 0.93694 1.02120 1.02281 1.22186 0.97907 0.95587 1.02630 1.22812 0.86397 0.96857 0.97312 0.87532 1.21983 0.84657 0.92282 0.97387 0.90109 1.45769 1.25064 1.51800 1.12528 1.20208 0.83576 0.79753 0.83744 1.90711 1.74782 1.54603 1.25176 1.22426 0.90136 1.03463 1.05118 0.83536 1.23279 0.93959 0.98439 1.01264 1.21680 1.00366 0.98250 0.90367 1.21395 1.00028 0.92219 1.03310 1.21250 1.00045 0.99763 0.94531 1.23038 0.93558 0.98973 1.01338 1.22844 0.98161 0.96740 0.89480 1.63391 1.05847 1.16266 1.38106 1.22074 0.91334 0.91612 1.02954 1.20838 0.90142 0.83964 0.82403 1.90477 1.72855 1.29981 1.56800 1.41918 1.07886 1.07594 1.63862 1.19643 0.84223 0.94175 1.48020 0.90384 1.26031 1.04692 0.94033 0.96629 1.69674 1.38454 0.97921 1.50106 0.84936 0.76924 0.77846 0.78677 1.19576 1.19584 1.19897 0.93295 0.91125 0.92218 0.90216 0.92520 0.74714 0.89412 0.85190 0.92102 0.91293 0.90527 0.93687 0.92093 0.93747 0.89632 0.91025 0.91635 0.95090 0.86534 0.91697 0.77088 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.76 71.98 0.70 -1.57 16 2 C -0.14 -2.99 4.08 30.59 0.12 -2.86 16 3 C 0.07 1.70 3.23 45.26 0.15 1.85 16 4 H 0.11 2.09 7.72 -2.39 -0.02 2.07 16 5 C 0.14 3.23 1.94 46.17 0.09 3.32 16 6 H 0.08 2.15 7.19 -2.39 -0.02 2.14 16 7 N -0.70 -11.82 4.57 -436.96 -2.00 -13.82 16 8 C 0.54 10.70 7.59 87.66 0.67 11.36 16 9 O -0.57 -16.08 12.75 -3.03 -0.04 -16.12 16 10 C -0.19 -2.50 5.91 -11.54 -0.07 -2.57 16 11 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 12 C -0.13 -1.44 9.52 30.59 0.29 -1.15 16 13 C -0.11 -1.45 2.70 -52.18 -0.14 -1.60 16 14 C -0.11 -1.02 9.85 71.98 0.71 -0.31 16 15 C -0.10 -1.86 8.09 71.98 0.58 -1.28 16 16 C -0.13 -3.39 6.76 31.98 0.22 -3.17 16 17 C 0.06 1.88 5.64 86.77 0.49 2.37 16 18 N -0.51 -16.51 4.91 -865.04 -4.25 -20.76 16 19 C 0.05 1.80 4.17 85.56 0.36 2.16 16 20 C 0.44 21.25 7.56 87.66 0.66 21.91 16 21 O -0.62 -34.39 14.42 -3.05 -0.04 -34.43 16 22 N -0.57 -29.93 5.29 -306.98 -1.62 -31.55 16 23 C -0.33 -19.03 9.68 84.04 0.81 -18.21 16 24 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 25 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 26 N -0.92 -50.12 13.05 21.66 0.28 -49.84 16 27 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 28 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 29 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 30 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 31 H 0.05 0.87 6.76 -2.39 -0.02 0.85 16 32 H 0.07 0.93 8.14 -2.38 -0.02 0.92 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.65 6.24 -2.39 -0.01 1.64 16 35 H 0.06 1.30 7.01 -2.38 -0.02 1.28 16 36 H 0.42 4.66 8.37 -92.71 -0.78 3.89 16 37 H 0.09 1.18 8.05 -2.38 -0.02 1.16 16 38 H 0.13 0.74 8.05 -2.39 -0.02 0.72 16 39 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.07 0.58 7.92 -2.39 -0.02 0.56 16 41 H 0.08 0.43 7.90 -2.39 -0.02 0.41 16 42 H 0.04 1.00 7.01 -2.39 -0.02 0.98 16 43 H 0.06 0.93 7.92 -2.38 -0.02 0.92 16 44 H 0.04 1.03 7.26 -2.39 -0.02 1.01 16 45 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.07 2.62 7.25 -2.39 -0.02 2.60 16 48 H 0.03 1.09 7.67 -2.39 -0.02 1.08 16 49 H 0.12 3.57 6.16 -2.39 -0.01 3.56 16 50 H 0.07 2.12 6.83 -2.38 -0.02 2.11 16 51 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 52 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -72.23 405.40 -0.11 -72.33 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -0.57 Total: 38.72 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 6.11 Total: 9.95 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -7.58 Total: -115.97 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -0.08 Total: -50.56 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -72.23 -0.11 -72.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316729556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.818 kcal (2) G-P(sol) polarization free energy of solvation -72.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds