Wall clock time and date at job start Tue Mar 31 2020 20:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47264 * 2 1 4 4 H 1.09002 * 109.46716 * 55.00469 * 3 2 1 5 5 C 1.52997 * 109.47317 * 295.00560 * 3 2 1 6 6 C 1.50697 * 109.46961 * 175.00118 * 3 2 1 7 7 O 1.21277 * 120.00304 * 0.02562 * 6 3 2 8 8 N 1.34778 * 119.99637 * 180.02562 * 6 3 2 9 9 C 1.46916 * 125.40138 * 179.97438 * 8 6 3 10 10 C 1.54693 * 107.33657 * 178.64788 * 9 8 6 11 11 H 1.08998 * 111.36261 * 141.00037 * 10 9 8 12 12 C 1.52976 * 107.56094 * 263.08611 * 10 9 8 13 13 C 1.52908 * 109.50084 * 165.26269 * 12 10 9 14 14 N 1.46522 * 108.58521 * 295.91679 * 13 12 10 15 15 C 1.46897 * 111.00034 * 187.00995 * 14 13 12 16 16 C 1.50705 * 109.47405 * 66.04730 * 15 14 13 17 17 O 1.21296 * 119.99610 * 359.97438 * 16 15 14 18 18 N 1.34771 * 120.00526 * 179.97438 * 16 15 14 19 19 C 1.37093 * 120.00252 * 179.97438 * 18 16 15 20 20 H 1.08005 * 120.00149 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00256 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00427 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99878 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47236 * 90.00390 * 23 21 19 25 25 H 1.48498 * 109.47542 * 210.00165 * 23 21 19 26 26 H 1.48501 * 109.47056 * 330.00347 * 23 21 19 27 27 C 1.45294 * 112.65471 * 61.82570 * 14 13 12 28 28 C 1.49895 * 115.41758 * 311.02440 * 27 14 13 29 29 H 1.08998 * 108.38478 * 159.77012 * 28 27 14 30 30 C 1.47191 * 125.40251 * 359.69902 * 8 6 3 31 31 H 1.08997 * 109.46584 * 299.99168 * 1 2 3 32 32 H 1.08999 * 109.47123 * 59.99430 * 1 2 3 33 33 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.46782 * 240.00033 * 2 1 3 35 35 H 1.08997 * 109.47391 * 120.01028 * 2 1 3 36 36 H 1.09002 * 109.47153 * 299.99641 * 5 3 2 37 37 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 38 38 H 1.09004 * 109.47261 * 59.99813 * 5 3 2 39 39 H 1.09003 * 109.87754 * 298.08893 * 9 8 6 40 40 H 1.09008 * 109.87044 * 59.06967 * 9 8 6 41 41 H 1.08995 * 109.46675 * 285.27203 * 12 10 9 42 42 H 1.09000 * 109.46773 * 45.26575 * 12 10 9 43 43 H 1.08995 * 109.62022 * 55.65130 * 13 12 10 44 44 H 1.09002 * 109.61749 * 176.19157 * 13 12 10 45 45 H 1.09002 * 109.47649 * 186.04553 * 15 14 13 46 46 H 1.09006 * 109.47406 * 306.05046 * 15 14 13 47 47 H 0.96999 * 119.99769 * 0.02562 * 18 16 15 48 48 H 0.97000 * 120.00150 * 179.97438 * 22 21 19 49 49 H 1.09003 * 108.29474 * 72.56982 * 27 14 13 50 50 H 1.09004 * 108.29330 * 189.47876 * 27 14 13 51 51 H 1.08998 * 110.21723 * 280.43719 * 30 8 6 52 52 H 1.08994 * 110.22541 * 42.37902 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5419 1.4442 0.1238 7 8 4.1451 0.3951 0.2037 8 7 4.2149 2.6117 0.1458 9 6 5.6727 2.7518 0.2625 10 6 5.9962 4.2636 0.2106 11 1 6.7937 4.5231 0.9068 12 6 6.3864 4.6029 -1.2291 13 6 6.3590 6.1196 -1.4214 14 7 4.9824 6.5883 -1.2417 15 6 4.8635 8.0135 -1.5774 16 6 5.1181 8.2056 -3.0503 17 8 5.3741 7.2494 -3.7513 18 7 5.0616 9.4398 -3.5887 19 6 5.2938 9.6146 -4.9284 20 1 5.5217 8.7632 -5.5526 21 6 5.2359 10.8872 -5.4834 22 7 5.4580 11.0547 -6.7677 23 14 4.8411 12.3597 -4.4040 24 1 6.1009 12.9254 -3.8581 25 1 4.1439 13.3927 -5.2115 26 1 3.9645 11.9318 -3.2842 27 6 4.4705 6.3230 0.0919 28 6 4.6681 4.9232 0.5902 29 1 4.5894 4.9309 1.6773 30 6 3.6064 3.9486 0.0509 31 1 -0.3632 0.5137 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8901 35 1 1.8934 -0.5140 0.8898 36 1 2.0698 1.5876 -2.1491 37 1 1.9983 3.1544 -1.3070 38 1 0.5489 2.1253 -1.3968 39 1 6.0105 2.3329 1.2104 40 1 6.1618 2.2374 -0.5649 41 1 7.3902 4.2293 -1.4311 42 1 5.6802 4.1370 -1.9163 43 1 7.0063 6.5938 -0.6838 44 1 6.7016 6.3674 -2.4261 45 1 3.8597 8.3616 -1.3339 46 1 5.5948 8.5840 -1.0049 47 1 4.8572 10.2046 -3.0280 48 1 5.4173 11.9430 -7.1551 49 1 4.9581 7.0059 0.7877 50 1 3.4025 6.5409 0.0981 51 1 3.3699 4.1820 -0.9872 52 1 2.7061 3.9971 0.6633 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316748851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:09 Heat of formation + Delta-G solvation = -68.182263 kcal Electronic energy + Delta-G solvation = -30390.866499 eV Core-core repulsion = 26389.977776 eV Total energy + Delta-G solvation = -4000.888723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.95109 -39.40395 -38.28006 -36.21694 -35.63120 -33.96480 -32.92829 -31.71702 -31.68018 -30.19507 -28.51385 -27.23520 -25.91455 -24.91430 -23.86359 -22.80683 -22.28230 -21.13114 -19.39931 -19.26748 -18.88661 -18.32083 -17.29236 -16.40887 -16.21448 -15.74784 -15.56012 -15.23325 -14.96337 -14.83851 -14.35626 -14.07944 -13.86475 -13.84012 -13.69374 -13.47578 -13.34172 -13.08238 -12.75659 -12.57710 -12.49098 -12.34735 -12.33250 -12.07549 -11.92348 -11.73807 -11.64156 -11.53301 -11.29566 -11.15871 -11.00391 -10.92609 -10.83420 -10.62002 -10.42334 -10.28061 -9.99283 -9.82779 -9.54209 -8.78115 -8.56235 -8.19876 -7.91986 -6.32792 -3.84248 2.50154 2.81689 3.00289 3.04468 3.13253 3.71560 3.80842 4.08245 4.14875 4.20809 4.46472 4.50525 4.57021 4.68612 4.73896 4.90801 5.02872 5.09503 5.10929 5.15687 5.22280 5.23240 5.27808 5.31224 5.33754 5.42951 5.49455 5.52708 5.57543 5.64227 5.65991 5.69914 5.73949 5.75809 5.77977 5.78323 5.83920 5.91144 5.94107 5.96097 6.04442 6.09832 6.20079 6.39036 6.43788 7.17113 7.35022 7.38751 7.56988 8.02452 8.12938 8.58427 8.93715 9.40752 9.81660 10.80305 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.002404 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.013452 B =11644.608700 C =12315.009808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.105 4.105 4 H 0.094 0.906 5 C -0.156 4.156 6 C 0.531 3.469 7 O -0.545 6.545 8 N -0.614 5.614 9 C 0.112 3.888 10 C -0.092 4.092 11 H 0.091 0.909 12 C -0.107 4.107 13 C 0.056 3.944 14 N -0.521 5.521 15 C 0.048 3.952 16 C 0.452 3.548 17 O -0.558 6.558 18 N -0.592 5.592 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.076 3.924 28 C -0.087 4.087 29 H 0.077 0.923 30 C 0.106 3.894 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.023 0.977 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.028 0.972 50 H 0.075 0.925 51 H 0.087 0.913 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.387 -12.563 19.502 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.127 4.127 4 H 0.112 0.888 5 C -0.213 4.213 6 C 0.320 3.680 7 O -0.422 6.422 8 N -0.348 5.348 9 C -0.011 4.011 10 C -0.111 4.111 11 H 0.109 0.891 12 C -0.145 4.145 13 C -0.071 4.071 14 N -0.246 5.246 15 C -0.083 4.083 16 C 0.238 3.762 17 O -0.439 6.439 18 N -0.231 5.231 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.053 4.053 28 C -0.107 4.107 29 H 0.096 0.904 30 C -0.017 4.017 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.041 0.959 44 H 0.124 0.876 45 H 0.107 0.893 46 H 0.067 0.933 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.046 0.954 50 H 0.094 0.906 51 H 0.105 0.895 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.203 -13.975 18.567 24.052 hybrid contribution 0.153 1.948 1.352 2.376 sum -6.050 -12.028 19.919 24.042 Atomic orbital electron populations 1.21844 0.95422 1.01861 1.01954 1.21343 0.95380 0.94169 1.03382 1.21300 0.91336 0.99299 1.00727 0.88794 1.22010 1.02355 1.01396 0.95564 1.20426 0.89853 0.82005 0.75677 1.90687 1.70451 1.30770 1.50317 1.48368 1.07690 1.06038 1.72735 1.22114 0.80891 0.96261 1.01791 1.21943 0.97052 0.93184 0.98966 0.89119 1.21626 1.01795 0.96448 0.94648 1.22137 0.87438 0.94334 1.03161 1.60298 1.23061 1.16322 1.24890 1.21823 1.01941 0.88453 0.96080 1.19637 0.84258 0.83644 0.88662 1.90535 1.51809 1.39488 1.62106 1.42217 1.64243 1.06816 1.09836 1.19414 1.45053 0.96308 0.82466 0.86272 1.25040 0.97709 0.97622 0.95833 1.69617 1.48491 1.23469 1.10559 0.86679 0.79017 0.83261 0.80457 1.19699 1.20204 1.19485 1.20818 1.00802 0.94264 0.89391 1.21077 0.94909 0.94302 1.00382 0.90424 1.22342 0.95987 0.80933 1.02438 0.92775 0.92261 0.92502 0.91297 0.91328 0.92013 0.91053 0.91162 0.91889 0.91011 0.91384 0.90504 0.95915 0.87628 0.89277 0.93336 0.79763 0.91620 0.95360 0.90640 0.89519 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.67 37.16 0.36 -0.69 16 2 C -0.10 -0.94 4.75 -26.73 -0.13 -1.07 16 3 C -0.11 -0.96 2.12 -91.78 -0.19 -1.15 16 4 H 0.09 0.70 7.89 -51.93 -0.41 0.29 16 5 C -0.16 -1.34 8.77 37.16 0.33 -1.01 16 6 C 0.53 6.50 7.21 -10.99 -0.08 6.42 16 7 O -0.54 -8.61 16.23 5.56 0.09 -8.51 16 8 N -0.61 -6.74 3.32 -171.21 -0.57 -7.31 16 9 C 0.11 1.19 6.29 -2.92 -0.02 1.18 16 10 C -0.09 -0.90 3.36 -89.70 -0.30 -1.20 16 11 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 12 C -0.11 -1.30 5.00 -26.79 -0.13 -1.44 16 13 C 0.06 0.81 5.13 -4.08 -0.02 0.79 16 14 N -0.52 -7.40 4.35 -239.75 -1.04 -8.44 16 15 C 0.05 0.74 5.41 -4.98 -0.03 0.72 16 16 C 0.45 9.72 7.45 -10.99 -0.08 9.64 16 17 O -0.56 -14.14 13.93 5.54 0.08 -14.07 16 18 N -0.59 -13.55 5.09 -10.96 -0.06 -13.61 16 19 C -0.30 -8.37 10.16 -14.94 -0.15 -8.52 16 20 H 0.12 3.77 7.39 -52.48 -0.39 3.38 16 21 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 22 N -0.88 -25.39 13.96 55.50 0.77 -24.61 16 23 Si 0.88 18.91 27.74 -169.99 -4.71 14.20 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 27 C 0.08 0.78 4.83 -6.23 -0.03 0.75 16 28 C -0.09 -0.79 2.76 -91.66 -0.25 -1.04 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 C 0.11 0.98 4.47 -3.21 -0.01 0.96 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.67 7.95 -51.93 -0.41 0.26 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.62 4.86 -51.93 -0.25 0.37 16 38 H 0.07 0.50 6.57 -51.93 -0.34 0.16 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.84 7.71 -51.92 -0.40 0.44 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.09 7.95 -51.93 -0.41 0.68 16 43 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.11 1.94 5.80 -51.93 -0.30 1.63 16 45 H 0.09 1.18 8.04 -51.93 -0.42 0.76 16 46 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 47 H 0.37 7.42 5.76 -40.82 -0.24 7.18 16 48 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.03 0.27 8.07 -51.93 -0.42 -0.15 16 50 H 0.08 0.70 8.00 -51.93 -0.42 0.28 16 51 H 0.09 0.94 6.62 -51.93 -0.34 0.60 16 52 H 0.07 0.53 7.64 -51.93 -0.40 0.14 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -33.14 394.76 -9.22 -42.36 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -8.88 Total: 8.69 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -0.84 Total: 5.35 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.89 Total: -53.97 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.17 Total: -22.58 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.20 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.14 -9.22 -42.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316748851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.822 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds