Wall clock time and date at job start Tue Mar 31 2020 20:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47081 * 2 1 4 4 H 1.09001 * 109.47285 * 304.76933 * 3 2 1 5 5 C 1.50703 * 109.47274 * 184.77510 * 3 2 1 6 6 O 1.21277 * 120.00190 * 240.00168 * 5 3 2 7 7 N 1.34780 * 119.99997 * 59.99135 * 5 3 2 8 8 C 1.46499 * 120.00163 * 180.02562 * 7 5 3 9 9 C 1.52993 * 109.47370 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47266 * 179.97438 * 9 8 7 11 11 N 1.46505 * 109.46850 * 180.02562 * 10 9 8 12 12 C 1.36930 * 119.99888 * 90.00523 * 11 10 9 13 13 H 1.08001 * 119.99903 * 215.76346 * 12 11 10 14 14 C 1.38808 * 120.00285 * 35.76716 * 12 11 10 15 15 N 1.31621 * 120.00204 * 22.30047 * 14 12 11 16 16 Si 1.86808 * 120.00102 * 202.30836 * 14 12 11 17 17 H 1.48501 * 109.47070 * 59.99782 * 16 14 12 18 18 H 1.48504 * 109.46904 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47052 * 299.99708 * 16 14 12 20 20 C 1.46504 * 119.99938 * 269.99926 * 11 10 9 21 21 C 1.52998 * 109.47223 * 93.62218 * 20 11 10 22 22 C 1.50697 * 109.47609 * 64.77264 * 3 2 1 23 23 C 1.41379 * 128.00725 * 63.04975 * 22 3 2 24 24 C 1.50702 * 126.80103 * 0.04205 * 23 22 3 25 25 N 1.30176 * 106.39714 * 180.02562 * 23 22 3 26 26 O 1.20917 * 111.60414 * 359.72450 * 25 23 22 27 27 C 1.34049 * 111.56689 * 0.45299 * 26 25 23 28 28 C 1.50694 * 126.77682 * 179.82757 * 27 26 25 29 29 H 1.08993 * 109.47465 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46695 * 300.00409 * 1 2 3 31 31 H 1.09000 * 109.46923 * 59.99725 * 1 2 3 32 32 H 1.09000 * 109.47093 * 239.99954 * 2 1 3 33 33 H 1.09003 * 109.47085 * 119.99517 * 2 1 3 34 34 H 0.97004 * 119.99696 * 0.02562 * 7 5 3 35 35 H 1.08995 * 109.47130 * 300.00795 * 8 7 5 36 36 H 1.08999 * 109.47031 * 60.00210 * 8 7 5 37 37 H 1.09004 * 109.47287 * 300.00537 * 9 8 7 38 38 H 1.08999 * 109.47100 * 59.99973 * 9 8 7 39 39 H 1.08993 * 109.47494 * 300.00057 * 10 9 8 40 40 H 1.08997 * 109.46907 * 60.00755 * 10 9 8 41 41 H 0.96995 * 120.00189 * 179.97438 * 15 14 12 42 42 H 1.09001 * 109.46718 * 213.61880 * 20 11 10 43 43 H 1.09000 * 109.46946 * 333.61839 * 20 11 10 44 44 H 1.08990 * 109.47567 * 180.02562 * 21 20 11 45 45 H 1.08999 * 109.46748 * 300.00227 * 21 20 11 46 46 H 1.09003 * 109.47040 * 59.99113 * 21 20 11 47 47 H 1.08996 * 109.47809 * 94.91773 * 24 23 22 48 48 H 1.09005 * 109.47136 * 214.91836 * 24 23 22 49 49 H 1.09004 * 109.47176 * 334.91304 * 24 23 22 50 50 H 1.08998 * 109.47291 * 269.68488 * 28 27 26 51 51 H 1.09001 * 109.47491 * 29.68371 * 28 27 26 52 52 H 1.09000 * 109.46930 * 149.68493 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6086 1.9804 -0.8442 5 6 3.5424 1.4442 -0.1183 6 8 4.2189 1.9445 0.7551 7 7 4.1343 0.8894 -1.1946 8 6 5.5948 0.8906 -1.3094 9 6 6.0044 0.2054 -2.6145 10 6 7.5296 0.2071 -2.7346 11 7 7.9217 -0.4485 -3.9847 12 6 8.0596 0.2886 -5.1304 13 1 7.7781 -0.1358 -6.0828 14 6 8.5613 1.5814 -5.0678 15 7 9.2978 1.9526 -4.0421 16 14 8.1908 2.7945 -6.4393 17 1 6.7221 2.9845 -6.5487 18 1 8.8367 4.0968 -6.1360 19 1 8.7187 2.2667 -7.7230 20 6 8.1664 -1.8928 -4.0090 21 6 6.8850 -2.6203 -4.4207 22 6 1.6366 2.1180 1.2852 23 6 2.0241 1.7840 2.6032 24 6 2.9408 0.6620 3.0177 25 7 1.4326 2.6379 3.3877 26 8 0.7630 3.4271 2.7626 27 6 0.8182 3.1854 1.4452 28 6 0.1141 3.9537 0.3567 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.5931 0.4894 -1.8933 35 1 5.9584 1.9181 -1.3091 36 1 6.0259 0.3524 -0.4652 37 1 5.6406 -0.8222 -2.6152 38 1 5.5732 0.7438 -3.4584 39 1 7.8930 1.2347 -2.7342 40 1 7.9611 -0.3312 -1.8908 41 1 9.6487 2.8558 -3.9986 42 1 8.9568 -2.1153 -4.7258 43 1 8.4709 -2.2264 -3.0170 44 1 7.0668 -3.6948 -4.4383 45 1 6.0945 -2.3976 -3.7040 46 1 6.5804 -2.2865 -5.4127 47 1 3.9563 1.0430 3.1248 48 1 2.6047 0.2510 3.9697 49 1 2.9244 -0.1200 2.2584 50 1 -0.8633 3.5082 0.1715 51 1 -0.0123 4.9908 0.6674 52 1 0.7087 3.9178 -0.5562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316903349.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:19 Heat of formation + Delta-G solvation = 19.721785 kcal Electronic energy + Delta-G solvation = -30156.844855 eV Core-core repulsion = 26159.767937 eV Total energy + Delta-G solvation = -3997.076917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.99522 -39.92798 -36.69622 -36.16066 -34.84598 -33.98781 -33.08557 -31.89254 -31.20970 -29.14927 -28.70507 -28.42412 -27.28796 -25.17767 -23.65809 -23.01873 -21.80771 -21.06528 -20.37980 -20.24255 -19.75534 -17.81826 -17.20031 -16.82026 -16.64298 -15.83543 -15.59985 -15.06573 -14.88473 -14.44548 -14.15165 -14.02533 -13.67884 -13.67334 -13.54466 -13.39417 -13.22719 -13.05440 -12.88908 -12.63829 -12.52091 -12.43407 -12.36719 -12.20265 -11.63591 -11.56157 -11.43331 -11.31624 -11.15549 -11.04223 -10.81742 -10.75676 -10.59526 -10.49116 -10.05677 -9.90187 -9.77362 -9.63593 -9.55638 -9.20305 -8.85646 -8.49225 -6.60927 -5.80452 -3.37694 1.35261 2.14392 2.67626 2.98659 3.30962 3.35197 3.41239 3.41809 4.08131 4.31200 4.39866 4.45769 4.52076 4.66140 4.86106 4.90768 5.05345 5.09310 5.13633 5.20410 5.23792 5.36193 5.38853 5.44675 5.54145 5.54308 5.61488 5.63450 5.70950 5.75538 5.81047 5.87210 5.89528 5.95323 6.06405 6.16613 6.26116 6.32858 6.40549 6.45317 6.55856 6.72822 6.76398 6.88271 7.06859 7.15149 7.61689 7.67636 7.79937 8.24233 8.30753 8.49322 9.17417 9.80669 10.38292 11.19060 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014129 B = 0.002576 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.230390 B =10866.941090 C =11485.615465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.030 4.030 4 H 0.107 0.893 5 C 0.511 3.489 6 O -0.531 6.531 7 N -0.724 5.724 8 C 0.121 3.879 9 C -0.146 4.146 10 C 0.149 3.851 11 N -0.585 5.585 12 C -0.260 4.260 13 H 0.059 0.941 14 C 0.011 3.989 15 N -0.886 5.886 16 Si 0.895 3.105 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.140 3.860 21 C -0.166 4.166 22 C -0.173 4.173 23 C 0.054 3.946 24 C -0.073 4.073 25 N -0.374 5.374 26 O 0.093 5.907 27 C -0.031 4.031 28 C -0.074 4.074 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.398 0.602 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.024 0.976 41 H 0.256 0.744 42 H 0.044 0.956 43 H 0.033 0.967 44 H 0.035 0.965 45 H 0.043 0.957 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.087 0.913 51 H 0.084 0.916 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.896 -2.759 8.233 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.052 4.052 4 H 0.125 0.875 5 C 0.296 3.704 6 O -0.407 6.407 7 N -0.375 5.375 8 C -0.002 4.002 9 C -0.186 4.186 10 C 0.022 3.978 11 N -0.305 5.305 12 C -0.390 4.390 13 H 0.077 0.923 14 C -0.189 4.189 15 N -0.528 5.528 16 Si 0.725 3.275 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.207 1.207 20 C 0.013 3.987 21 C -0.225 4.225 22 C -0.178 4.178 23 C -0.105 4.105 24 C -0.131 4.131 25 N -0.081 5.081 26 O 0.030 5.970 27 C -0.095 4.095 28 C -0.132 4.132 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.232 0.768 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.106 0.894 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.106 0.894 51 H 0.103 0.897 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.266 -2.045 10.219 21.904 hybrid contribution -0.302 0.288 -1.840 1.887 sum -19.568 -1.756 8.378 21.359 Atomic orbital electron populations 1.21754 0.94734 1.02059 1.02084 1.21606 0.96961 0.93446 1.03386 1.19665 0.93254 0.97689 0.94582 0.87533 1.20343 0.89518 0.78388 0.82146 1.90714 1.65491 1.44702 1.39790 1.46170 1.08878 1.59753 1.22677 1.21476 0.77892 1.01631 0.99193 1.22533 1.02535 0.98973 0.94606 1.20826 0.88526 1.01768 0.86709 1.43763 1.77847 1.01807 1.07057 1.18954 1.36830 0.96109 0.87095 0.92288 1.25134 0.96501 0.99864 0.97386 1.69979 1.32593 1.18639 1.31636 0.86490 0.78202 0.80718 0.82104 1.20988 1.21602 1.20737 1.20847 0.94215 0.85551 0.98054 1.22377 1.00733 0.98112 1.01317 1.20198 1.02790 0.99533 0.95233 1.23242 0.99083 0.98606 0.89546 1.20225 0.97891 0.93508 1.01440 1.73804 1.09901 1.03868 1.20540 1.84785 1.52489 1.43653 1.16066 1.24129 1.01236 0.97798 0.86346 1.20339 0.99968 0.99726 0.93120 0.92209 0.92682 0.92320 0.90542 0.90840 0.76815 0.91573 0.92022 0.93066 0.91754 0.88478 0.95766 0.93442 0.93806 0.94903 0.94629 0.93793 0.93282 0.89359 0.91178 0.90571 0.89434 0.89744 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.73 37.16 0.36 -0.62 16 2 C -0.12 -0.91 5.30 -26.73 -0.14 -1.05 16 3 C -0.03 -0.29 2.47 -92.92 -0.23 -0.52 16 4 H 0.11 0.83 7.11 -51.93 -0.37 0.46 16 5 C 0.51 6.83 6.90 -10.98 -0.08 6.76 16 6 O -0.53 -9.22 14.10 5.56 0.08 -9.14 16 7 N -0.72 -9.22 5.42 -60.30 -0.33 -9.55 16 8 C 0.12 1.93 5.67 -4.05 -0.02 1.91 16 9 C -0.15 -2.58 5.65 -26.74 -0.15 -2.73 16 10 C 0.15 3.28 5.34 -4.04 -0.02 3.26 16 11 N -0.58 -13.90 2.44 -173.24 -0.42 -14.32 16 12 C -0.26 -6.85 9.47 -15.06 -0.14 -6.99 16 13 H 0.06 1.56 7.92 -52.49 -0.42 1.14 16 14 C 0.01 0.31 4.95 -17.43 -0.09 0.22 16 15 N -0.89 -24.94 11.40 55.49 0.63 -24.31 16 16 Si 0.90 21.01 29.61 -169.99 -5.03 15.98 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.14 2.85 6.43 -4.04 -0.03 2.83 16 21 C -0.17 -2.85 10.22 37.16 0.38 -2.47 16 22 C -0.17 -2.01 3.49 -104.43 -0.36 -2.38 16 23 C 0.05 0.73 6.67 -82.10 -0.55 0.18 16 24 C -0.07 -0.87 9.08 36.01 0.33 -0.54 16 25 N -0.37 -5.37 12.07 33.42 0.40 -4.97 16 26 O 0.09 1.19 11.20 17.15 0.19 1.38 16 27 C -0.03 -0.33 7.49 -35.31 -0.26 -0.60 16 28 C -0.07 -0.46 10.19 36.00 0.37 -0.09 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.42 7.37 -51.93 -0.38 0.04 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.51 7.43 -51.93 -0.39 0.13 16 33 H 0.07 0.63 5.67 -51.93 -0.29 0.34 16 34 H 0.40 4.04 7.83 -40.82 -0.32 3.72 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.84 6.51 -51.93 -0.34 0.50 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.10 2.48 5.42 -51.93 -0.28 2.19 16 40 H 0.02 0.51 7.87 -51.93 -0.41 0.10 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 43 H 0.03 0.63 7.85 -51.93 -0.41 0.22 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.04 0.72 6.51 -51.93 -0.34 0.38 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.09 1.18 7.75 -51.93 -0.40 0.77 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.08 0.81 5.70 -51.93 -0.30 0.51 16 50 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.09 0.50 7.35 -51.93 -0.38 0.11 16 LS Contribution 412.71 15.07 6.22 6.22 Total: -1.00 -32.04 412.71 -7.70 -39.74 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.80 Total: 1.80 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -0.64 Total: -2.83 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.29 Total: -53.15 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.27 Total: -7.75 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.04 -7.70 -39.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316903349.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.459 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds