Wall clock time and date at job start Tue Mar 31 2020 20:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47081 * 2 1 4 4 H 1.09001 * 109.47285 * 304.76933 * 3 2 1 5 5 C 1.50703 * 109.47274 * 184.77510 * 3 2 1 6 6 O 1.21277 * 120.00190 * 240.00168 * 5 3 2 7 7 N 1.34780 * 119.99997 * 59.99135 * 5 3 2 8 8 C 1.46499 * 120.00163 * 180.02562 * 7 5 3 9 9 C 1.52993 * 109.47370 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47266 * 179.97438 * 9 8 7 11 11 N 1.46505 * 109.46850 * 180.02562 * 10 9 8 12 12 C 1.36930 * 119.99888 * 90.00523 * 11 10 9 13 13 H 1.08001 * 119.99903 * 215.76346 * 12 11 10 14 14 C 1.38808 * 120.00285 * 35.76716 * 12 11 10 15 15 N 1.31621 * 120.00204 * 22.30047 * 14 12 11 16 16 Si 1.86808 * 120.00102 * 202.30836 * 14 12 11 17 17 H 1.48501 * 109.47070 * 59.99782 * 16 14 12 18 18 H 1.48504 * 109.46904 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47052 * 299.99708 * 16 14 12 20 20 C 1.46504 * 119.99938 * 269.99926 * 11 10 9 21 21 C 1.52998 * 109.47223 * 93.62218 * 20 11 10 22 22 C 1.50697 * 109.47609 * 64.77264 * 3 2 1 23 23 C 1.41379 * 128.00725 * 63.04975 * 22 3 2 24 24 C 1.50702 * 126.80103 * 0.04205 * 23 22 3 25 25 N 1.30176 * 106.39714 * 180.02562 * 23 22 3 26 26 O 1.20917 * 111.60414 * 359.72450 * 25 23 22 27 27 C 1.34049 * 111.56689 * 0.45299 * 26 25 23 28 28 C 1.50694 * 126.77682 * 179.82757 * 27 26 25 29 29 H 1.08993 * 109.47465 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46695 * 300.00409 * 1 2 3 31 31 H 1.09000 * 109.46923 * 59.99725 * 1 2 3 32 32 H 1.09000 * 109.47093 * 239.99954 * 2 1 3 33 33 H 1.09003 * 109.47085 * 119.99517 * 2 1 3 34 34 H 0.97004 * 119.99696 * 0.02562 * 7 5 3 35 35 H 1.08995 * 109.47130 * 300.00795 * 8 7 5 36 36 H 1.08999 * 109.47031 * 60.00210 * 8 7 5 37 37 H 1.09004 * 109.47287 * 300.00537 * 9 8 7 38 38 H 1.08999 * 109.47100 * 59.99973 * 9 8 7 39 39 H 1.08993 * 109.47494 * 300.00057 * 10 9 8 40 40 H 1.08997 * 109.46907 * 60.00755 * 10 9 8 41 41 H 0.96995 * 120.00189 * 179.97438 * 15 14 12 42 42 H 1.09001 * 109.46718 * 213.61880 * 20 11 10 43 43 H 1.09000 * 109.46946 * 333.61839 * 20 11 10 44 44 H 1.08990 * 109.47567 * 180.02562 * 21 20 11 45 45 H 1.08999 * 109.46748 * 300.00227 * 21 20 11 46 46 H 1.09003 * 109.47040 * 59.99113 * 21 20 11 47 47 H 1.08996 * 109.47809 * 94.91773 * 24 23 22 48 48 H 1.09005 * 109.47136 * 214.91836 * 24 23 22 49 49 H 1.09004 * 109.47176 * 334.91304 * 24 23 22 50 50 H 1.08998 * 109.47291 * 269.68488 * 28 27 26 51 51 H 1.09001 * 109.47491 * 29.68371 * 28 27 26 52 52 H 1.09000 * 109.46930 * 149.68493 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6086 1.9804 -0.8442 5 6 3.5424 1.4442 -0.1183 6 8 4.2189 1.9445 0.7551 7 7 4.1343 0.8894 -1.1946 8 6 5.5948 0.8906 -1.3094 9 6 6.0044 0.2054 -2.6145 10 6 7.5296 0.2071 -2.7346 11 7 7.9217 -0.4485 -3.9847 12 6 8.0596 0.2886 -5.1304 13 1 7.7781 -0.1358 -6.0828 14 6 8.5613 1.5814 -5.0678 15 7 9.2978 1.9526 -4.0421 16 14 8.1908 2.7945 -6.4393 17 1 6.7221 2.9845 -6.5487 18 1 8.8367 4.0968 -6.1360 19 1 8.7187 2.2667 -7.7230 20 6 8.1664 -1.8928 -4.0090 21 6 6.8850 -2.6203 -4.4207 22 6 1.6366 2.1180 1.2852 23 6 2.0241 1.7840 2.6032 24 6 2.9408 0.6620 3.0177 25 7 1.4326 2.6379 3.3877 26 8 0.7630 3.4271 2.7626 27 6 0.8182 3.1854 1.4452 28 6 0.1141 3.9537 0.3567 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.5931 0.4894 -1.8933 35 1 5.9584 1.9181 -1.3091 36 1 6.0259 0.3524 -0.4652 37 1 5.6406 -0.8222 -2.6152 38 1 5.5732 0.7438 -3.4584 39 1 7.8930 1.2347 -2.7342 40 1 7.9611 -0.3312 -1.8908 41 1 9.6487 2.8558 -3.9986 42 1 8.9568 -2.1153 -4.7258 43 1 8.4709 -2.2264 -3.0170 44 1 7.0668 -3.6948 -4.4383 45 1 6.0945 -2.3976 -3.7040 46 1 6.5804 -2.2865 -5.4127 47 1 3.9563 1.0430 3.1248 48 1 2.6047 0.2510 3.9697 49 1 2.9244 -0.1200 2.2584 50 1 -0.8633 3.5082 0.1715 51 1 -0.0123 4.9908 0.6674 52 1 0.7087 3.9178 -0.5562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316903349.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:18 Heat of formation + Delta-G solvation = 0.984320 kcal Electronic energy + Delta-G solvation = -30157.657372 eV Core-core repulsion = 26159.767937 eV Total energy + Delta-G solvation = -3997.889435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.92406 -40.99566 -38.23628 -37.20060 -36.14650 -34.88722 -33.85675 -33.76245 -32.56484 -30.34560 -29.81370 -29.40941 -28.12420 -26.82846 -25.22363 -23.78627 -22.81843 -22.45250 -21.96346 -21.16731 -20.87070 -18.77034 -18.62002 -18.18931 -17.62543 -17.04168 -16.87186 -16.54307 -16.04755 -15.65548 -15.55989 -15.19006 -14.90004 -14.80788 -14.34082 -14.27284 -14.19874 -14.04645 -13.97063 -13.78929 -13.73311 -13.29855 -13.22946 -13.15687 -13.04502 -12.91739 -12.71694 -12.67639 -12.53064 -12.31969 -12.20639 -12.11435 -11.95738 -11.88937 -11.55832 -11.45664 -11.21370 -10.90520 -10.72676 -10.46797 -10.07894 -10.02600 -8.54890 -7.79032 -5.40936 0.51345 1.19906 1.47566 1.49841 1.56302 1.63696 2.18760 2.29559 2.53351 3.21017 3.26096 3.53777 3.56191 3.69641 3.79038 3.96473 4.09158 4.19229 4.23013 4.36082 4.40112 4.47153 4.48323 4.56110 4.58029 4.62918 4.71187 4.73285 4.76333 4.78713 4.81430 4.83612 4.90929 4.95294 5.04111 5.07286 5.07796 5.17309 5.19233 5.25227 5.28821 5.36003 5.43969 5.47282 5.50565 5.62943 5.71528 5.88620 6.49006 6.59957 7.20361 7.28220 7.34389 7.91559 8.42762 9.15506 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014129 B = 0.002576 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.230390 B =10866.941090 C =11485.615465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.019 4.019 4 H 0.136 0.864 5 C 0.510 3.490 6 O -0.575 6.575 7 N -0.712 5.712 8 C 0.136 3.864 9 C -0.121 4.121 10 C 0.148 3.852 11 N -0.602 5.602 12 C -0.262 4.262 13 H 0.057 0.943 14 C -0.038 4.038 15 N -0.919 5.919 16 Si 0.954 3.046 17 H -0.275 1.275 18 H -0.297 1.297 19 H -0.276 1.276 20 C 0.133 3.867 21 C -0.151 4.151 22 C -0.190 4.190 23 C 0.036 3.964 24 C -0.070 4.070 25 N -0.406 5.406 26 O 0.082 5.918 27 C -0.023 4.023 28 C -0.075 4.075 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.415 0.585 35 H 0.039 0.961 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.024 0.976 41 H 0.250 0.750 42 H 0.029 0.971 43 H 0.042 0.958 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.037 0.963 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.087 0.913 50 H 0.114 0.886 51 H 0.094 0.906 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.674 -3.757 6.652 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.040 4.040 4 H 0.154 0.846 5 C 0.297 3.703 6 O -0.454 6.454 7 N -0.364 5.364 8 C 0.011 3.989 9 C -0.162 4.162 10 C 0.021 3.979 11 N -0.323 5.323 12 C -0.393 4.393 13 H 0.074 0.926 14 C -0.235 4.235 15 N -0.563 5.563 16 Si 0.782 3.218 17 H -0.201 1.201 18 H -0.224 1.224 19 H -0.202 1.202 20 C 0.008 3.992 21 C -0.210 4.210 22 C -0.194 4.194 23 C -0.122 4.122 24 C -0.127 4.127 25 N -0.115 5.115 26 O 0.020 5.980 27 C -0.087 4.087 28 C -0.132 4.132 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.252 0.748 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.105 0.895 50 H 0.133 0.867 51 H 0.112 0.888 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.091 -3.081 8.610 23.909 hybrid contribution 0.602 0.554 -1.322 1.555 sum -21.489 -2.527 7.289 22.832 Atomic orbital electron populations 1.21719 0.93434 1.02694 1.02290 1.21639 0.97995 0.91843 1.03687 1.19709 0.90177 0.99402 0.94737 0.84601 1.21003 0.91028 0.77096 0.81173 1.90710 1.66842 1.46528 1.41327 1.45940 1.07482 1.59717 1.23248 1.21076 0.79993 0.99722 0.98121 1.22148 0.99055 1.00157 0.94795 1.20728 0.91398 0.99537 0.86216 1.44015 1.78461 1.03089 1.06736 1.19171 1.35671 0.96505 0.87910 0.92552 1.25797 0.96800 1.01437 0.99465 1.70125 1.34147 1.18468 1.33561 0.85563 0.78169 0.78301 0.79793 1.20116 1.22383 1.20171 1.21004 0.95735 0.84141 0.98352 1.22170 0.98804 0.99333 1.00677 1.20433 1.03474 1.00338 0.95174 1.23599 0.99195 0.98763 0.90676 1.20200 0.96504 0.93543 1.02449 1.73782 1.11196 1.04838 1.21710 1.84735 1.52423 1.43500 1.17300 1.24926 1.00367 0.97240 0.86120 1.20617 1.00946 0.99910 0.91765 0.91421 0.93999 0.90530 0.88824 0.91973 0.74846 0.94240 0.92389 0.90937 0.92898 0.92103 0.95714 0.94114 0.95266 0.93948 0.91731 0.92798 0.94397 0.91471 0.90151 0.89465 0.86731 0.88751 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.73 71.98 0.70 -0.72 16 2 C -0.11 -1.46 5.30 30.59 0.16 -1.29 16 3 C -0.02 -0.32 2.47 -12.29 -0.03 -0.35 16 4 H 0.14 1.55 7.11 -2.39 -0.02 1.53 16 5 C 0.51 12.98 6.90 87.66 0.61 13.59 16 6 O -0.58 -20.14 14.10 -3.02 -0.04 -20.18 16 7 N -0.71 -16.84 5.42 -463.08 -2.51 -19.35 16 8 C 0.14 4.26 5.67 86.38 0.49 4.75 16 9 C -0.12 -4.15 5.65 30.59 0.17 -3.97 16 10 C 0.15 6.57 5.34 86.38 0.46 7.03 16 11 N -0.60 -28.47 2.44 -702.01 -1.71 -30.18 16 12 C -0.26 -13.79 9.47 84.03 0.80 -12.99 16 13 H 0.06 2.95 7.92 -2.91 -0.02 2.93 16 14 C -0.04 -2.05 4.95 84.86 0.42 -1.63 16 15 N -0.92 -53.06 11.40 21.65 0.25 -52.81 16 16 Si 0.95 43.39 29.61 68.60 2.03 45.42 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 C 0.13 5.28 6.43 86.38 0.56 5.84 16 21 C -0.15 -4.75 10.22 71.98 0.74 -4.02 16 22 C -0.19 -4.17 3.49 -19.74 -0.07 -4.24 16 23 C 0.04 0.97 6.67 43.58 0.29 1.26 16 24 C -0.07 -1.69 9.08 71.24 0.65 -1.04 16 25 N -0.41 -11.88 12.07 -49.56 -0.60 -12.48 16 26 O 0.08 2.08 11.20 71.56 0.80 2.88 16 27 C -0.02 -0.45 7.49 25.04 0.19 -0.26 16 28 C -0.08 -0.69 10.19 71.23 0.73 0.03 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.04 0.53 7.37 -2.39 -0.02 0.52 16 31 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 0.89 7.43 -2.39 -0.02 0.87 16 33 H 0.06 0.95 5.67 -2.39 -0.01 0.93 16 34 H 0.41 7.09 7.83 -92.71 -0.73 6.36 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.18 6.51 -2.38 -0.02 2.16 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 3.21 5.42 -2.39 -0.01 3.19 16 40 H 0.02 1.06 7.87 -2.39 -0.02 1.04 16 41 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.03 1.22 8.07 -2.39 -0.02 1.20 16 43 H 0.04 1.58 7.85 -2.39 -0.02 1.56 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.05 1.59 6.51 -2.39 -0.02 1.57 16 46 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.07 1.90 7.75 -2.39 -0.02 1.88 16 48 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 49 H 0.09 1.84 5.70 -2.38 -0.01 1.83 16 50 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 51 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 52 H 0.10 0.73 7.35 -2.39 -0.02 0.72 16 Total: -1.00 -72.24 412.71 5.25 -66.98 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.19 Total: 17.74 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 6.85 Total: 1.98 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -4.58 Total: -114.82 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.76 Total: -17.30 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -72.24 5.25 -66.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316903349.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.967 kcal (2) G-P(sol) polarization free energy of solvation -72.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds