Wall clock time and date at job start Tue Mar 31 2020 20:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46947 * 2 1 4 4 H 1.08998 * 109.46980 * 55.37515 * 3 2 1 5 5 C 1.52995 * 109.46913 * 175.37953 * 3 2 1 6 6 N 1.46502 * 109.47188 * 174.99947 * 5 3 2 7 7 C 1.34777 * 119.99850 * 179.97438 * 6 5 3 8 8 O 1.21612 * 120.00447 * 359.97438 * 7 6 5 9 9 C 1.47105 * 119.99441 * 179.97438 * 7 6 5 10 10 C 1.50696 * 120.00578 * 0.02562 * 9 7 6 11 11 C 1.33000 * 119.99443 * 180.02562 * 9 7 6 12 12 C 1.51442 * 126.34423 * 359.68489 * 11 9 7 13 13 C 1.54282 * 106.85151 * 180.62248 * 12 11 9 14 14 C 1.54989 * 103.74779 * 23.12448 * 13 12 11 15 15 C 1.51846 * 126.33808 * 180.02562 * 11 9 7 16 16 N 1.46903 * 109.47070 * 295.37667 * 3 2 1 17 17 C 1.46901 * 110.99838 * 302.88931 * 16 3 2 18 18 C 1.50701 * 109.47327 * 185.63939 * 17 16 3 19 19 O 1.21293 * 119.99509 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00211 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99753 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99948 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99853 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00107 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00140 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47354 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47245 * 119.99500 * 25 23 21 28 28 H 1.48502 * 109.47095 * 239.99548 * 25 23 21 29 29 H 1.09006 * 109.47295 * 298.73117 * 1 2 3 30 30 H 1.09000 * 109.47523 * 58.72982 * 1 2 3 31 31 H 1.09000 * 109.47211 * 178.73546 * 1 2 3 32 32 H 1.09001 * 109.46969 * 240.00060 * 2 1 3 33 33 H 1.09000 * 109.47143 * 120.00135 * 2 1 3 34 34 H 1.09003 * 109.47777 * 54.99520 * 5 3 2 35 35 H 1.09006 * 109.47207 * 294.99510 * 5 3 2 36 36 H 0.96995 * 119.99981 * 359.97438 * 6 5 3 37 37 H 1.09003 * 109.46817 * 270.00224 * 10 9 7 38 38 H 1.09006 * 109.46736 * 29.99633 * 10 9 7 39 39 H 1.08996 * 109.47787 * 149.99819 * 10 9 7 40 40 H 1.08996 * 109.98532 * 299.97403 * 12 11 9 41 41 H 1.09004 * 109.97948 * 61.27377 * 12 11 9 42 42 H 1.09000 * 110.56709 * 264.55988 * 13 12 11 43 43 H 1.08999 * 110.56801 * 141.69217 * 13 12 11 44 44 H 1.09003 * 110.82695 * 204.70772 * 14 13 12 45 45 H 1.09000 * 110.82966 * 81.13047 * 14 13 12 46 46 H 1.09001 * 110.43876 * 274.68719 * 15 11 9 47 47 H 1.09005 * 110.44331 * 37.07733 * 15 11 9 48 48 H 1.00897 * 111.00013 * 66.84263 * 16 3 2 49 49 H 1.09005 * 109.47124 * 305.63455 * 17 16 3 50 50 H 1.09001 * 109.47697 * 65.63350 * 17 16 3 51 51 H 0.96996 * 120.00362 * 0.02562 * 20 18 17 52 52 H 0.97007 * 120.00255 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6105 1.9797 0.8456 5 6 3.5655 1.4441 0.1162 6 7 4.0630 2.8168 -0.0037 7 6 5.3861 3.0629 0.0695 8 8 6.1670 2.1455 0.2355 9 6 5.8856 4.4412 -0.0514 10 6 4.9180 5.5781 -0.2565 11 6 7.1913 4.6839 0.0203 12 6 8.2849 3.6573 0.2291 13 6 9.6217 4.4270 0.2557 14 6 9.2099 5.8668 0.6553 15 6 7.8610 6.0427 -0.0848 16 7 1.6435 2.1020 -1.2514 17 6 2.1482 1.3650 -2.4176 18 6 1.8428 2.1410 -3.6729 19 8 1.2616 3.2032 -3.6029 20 7 2.2147 1.6541 -4.8734 21 6 1.9364 2.3599 -6.0153 22 1 1.4189 3.3057 -5.9529 23 6 2.3194 1.8577 -7.2530 24 7 2.9487 0.7066 -7.3289 25 14 1.9409 2.8196 -8.8089 26 1 1.2307 4.0747 -8.4546 27 1 3.2089 3.1484 -9.5084 28 1 1.0817 2.0001 -9.7008 29 1 -0.3634 0.4940 0.9012 30 1 -0.3634 0.5334 -0.8784 31 1 -0.3634 -1.0274 -0.0227 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9912 0.8326 -0.6794 35 1 3.8566 1.0354 1.0839 36 1 3.4402 3.5486 -0.1357 37 1 4.7625 5.7347 -1.3240 38 1 3.9668 5.3357 0.2175 39 1 5.3247 6.4862 0.1885 40 1 8.1341 3.1398 1.1764 41 1 8.2841 2.9402 -0.5918 42 1 10.0865 4.4213 -0.7302 43 1 10.2944 4.0006 0.9998 44 1 9.9433 6.5917 0.3022 45 1 9.0733 5.9456 1.7338 46 1 8.0311 6.3034 -1.1294 47 1 7.2536 6.8053 0.4028 48 1 0.6419 2.2135 -1.2998 49 1 3.2263 1.2330 -2.3254 50 1 1.6656 0.3889 -2.4674 51 1 2.6786 0.8041 -4.9295 52 1 3.2164 0.3562 -8.1930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318510727.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:21 Heat of formation + Delta-G solvation = -102.870890 kcal Electronic energy + Delta-G solvation = -29874.011449 eV Core-core repulsion = 25871.618515 eV Total energy + Delta-G solvation = -4002.392935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.10448 -40.29131 -39.07452 -38.36637 -35.96229 -35.27831 -34.20139 -33.31069 -32.77113 -29.90125 -29.85776 -28.48251 -27.99328 -26.14106 -25.45867 -23.99998 -21.79521 -21.66595 -21.47052 -20.68220 -19.91139 -19.15524 -18.32999 -17.43103 -17.15065 -17.05619 -16.70013 -16.51049 -16.06746 -15.91095 -15.65637 -15.47253 -15.23920 -14.78949 -14.65618 -14.41519 -14.20309 -14.06724 -13.89018 -13.55158 -13.53248 -13.38357 -13.16655 -13.14573 -12.90602 -12.80464 -12.73163 -12.40827 -12.35356 -12.14052 -12.11958 -11.93385 -11.85821 -11.83196 -11.68229 -11.50780 -11.48076 -10.68437 -10.34786 -10.10115 -10.01576 -9.63095 -9.34720 -8.46964 -5.95819 0.42152 1.35794 1.40652 1.55143 2.05324 2.22367 2.28728 2.37616 2.93629 3.20208 3.45821 3.54487 3.72485 3.75950 3.95166 4.03958 4.14489 4.15269 4.18746 4.27346 4.32249 4.34832 4.45283 4.49167 4.51879 4.56693 4.69289 4.72465 4.76699 4.78932 4.82234 4.90001 4.91989 4.96062 5.05904 5.10389 5.12844 5.17830 5.21482 5.24354 5.36599 5.40378 5.40851 5.52090 5.53525 5.68934 5.87230 6.07764 6.40656 6.59041 6.67459 7.12268 7.31208 7.56004 8.10674 8.70853 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007956 B = 0.003214 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.292639 B = 8709.401302 C =11155.500454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.156 4.156 3 C 0.084 3.916 4 H 0.112 0.888 5 C 0.127 3.873 6 N -0.705 5.705 7 C 0.542 3.458 8 O -0.586 6.586 9 C -0.204 4.204 10 C -0.105 4.105 11 C -0.045 4.045 12 C -0.091 4.091 13 C -0.126 4.126 14 C -0.117 4.117 15 C -0.097 4.097 16 N -0.664 5.664 17 C 0.064 3.936 18 C 0.442 3.558 19 O -0.616 6.616 20 N -0.577 5.577 21 C -0.330 4.330 22 H 0.081 0.919 23 C -0.016 4.016 24 N -0.923 5.923 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.273 1.273 28 H -0.271 1.271 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.414 0.586 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.352 0.648 49 H 0.087 0.913 50 H 0.067 0.933 51 H 0.393 0.607 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 5.039 19.397 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C -0.026 4.026 4 H 0.130 0.870 5 C 0.003 3.997 6 N -0.356 5.356 7 C 0.332 3.668 8 O -0.469 6.469 9 C -0.207 4.207 10 C -0.161 4.161 11 C -0.047 4.047 12 C -0.128 4.128 13 C -0.164 4.164 14 C -0.154 4.154 15 C -0.134 4.134 16 N -0.297 5.297 17 C -0.069 4.069 18 C 0.229 3.771 19 O -0.502 6.502 20 N -0.214 5.214 21 C -0.459 4.459 22 H 0.099 0.901 23 C -0.215 4.215 24 N -0.564 5.564 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.198 1.198 28 H -0.196 1.196 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.251 0.749 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.109 0.891 47 H 0.113 0.887 48 H 0.173 0.827 49 H 0.105 0.895 50 H 0.084 0.916 51 H 0.226 0.774 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.988 5.440 19.408 21.332 hybrid contribution -0.833 -1.073 -1.303 1.882 sum 6.155 4.367 18.105 19.615 Atomic orbital electron populations 1.21743 0.94675 1.02383 1.01991 1.22169 0.97133 0.96858 1.03407 1.21950 0.93308 0.94543 0.92795 0.86976 1.21432 0.93619 0.83276 1.01419 1.45764 1.06928 1.10448 1.72507 1.18755 0.82460 0.89493 0.76098 1.90718 1.56690 1.47348 1.52114 1.20922 0.95134 0.93702 1.10928 1.20703 0.97494 0.95763 1.02181 1.23045 0.92826 0.98394 0.90401 1.21218 0.93339 0.96597 1.01603 1.22476 0.95746 0.95948 1.02217 1.22523 0.95907 0.96422 1.00541 1.21660 0.96635 0.92876 1.02228 1.60131 1.19434 1.50371 0.99772 1.21496 1.01416 0.95190 0.88753 1.20814 0.83321 0.87614 0.85342 1.90480 1.47050 1.25349 1.87283 1.41970 1.52349 1.21891 1.05218 1.19703 1.36616 1.04798 0.84831 0.90113 1.26065 0.96243 0.97260 1.01936 1.69693 1.39897 1.19564 1.27292 0.84869 0.78230 0.78095 0.77146 1.19503 1.19793 1.19594 0.91072 0.94025 0.91863 0.92286 0.89434 0.93480 0.90350 0.74853 0.91978 0.91136 0.89134 0.91310 0.92565 0.91164 0.90356 0.89122 0.90596 0.89076 0.88717 0.82696 0.89537 0.91553 0.77373 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.70 71.98 0.70 -1.90 16 2 C -0.16 -2.86 5.10 30.59 0.16 -2.70 16 3 C 0.08 1.75 2.70 44.91 0.12 1.87 16 4 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 5 C 0.13 3.14 4.76 86.38 0.41 3.55 16 6 N -0.71 -19.10 5.33 -466.70 -2.49 -21.59 16 7 C 0.54 16.83 7.75 86.57 0.67 17.50 16 8 O -0.59 -21.51 14.11 -4.07 -0.06 -21.56 16 9 C -0.20 -5.33 6.00 -18.70 -0.11 -5.44 16 10 C -0.10 -2.19 9.35 71.23 0.67 -1.52 16 11 C -0.04 -1.07 6.12 -17.01 -0.10 -1.17 16 12 C -0.09 -2.25 4.82 30.52 0.15 -2.10 16 13 C -0.13 -2.19 6.87 31.71 0.22 -1.97 16 14 C -0.12 -1.59 6.95 31.91 0.22 -1.37 16 15 C -0.10 -1.59 6.07 30.85 0.19 -1.41 16 16 N -0.66 -18.81 5.32 -495.56 -2.64 -21.45 16 17 C 0.06 2.20 5.31 85.56 0.45 2.65 16 18 C 0.44 20.98 7.83 87.66 0.69 21.66 16 19 O -0.62 -33.27 15.90 -3.07 -0.05 -33.32 16 20 N -0.58 -30.16 5.29 -306.99 -1.62 -31.78 16 21 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 22 H 0.08 4.91 7.16 -2.91 -0.02 4.88 16 23 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 24 N -0.92 -50.94 13.05 21.66 0.28 -50.66 16 25 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 28 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 29 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.04 0.85 6.87 -2.39 -0.02 0.84 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.25 6.23 -2.39 -0.01 1.23 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.36 6.61 -2.39 -0.02 1.35 16 35 H 0.08 1.78 8.14 -2.38 -0.02 1.77 16 36 H 0.41 10.58 6.24 -92.71 -0.58 10.00 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.36 6.70 -2.38 -0.02 1.34 16 39 H 0.09 1.43 6.58 -2.39 -0.02 1.41 16 40 H 0.07 1.87 7.66 -2.39 -0.02 1.85 16 41 H 0.06 1.69 7.69 -2.38 -0.02 1.67 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 45 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.09 1.24 6.86 -2.38 -0.02 1.22 16 48 H 0.35 10.13 7.28 -89.70 -0.65 9.48 16 49 H 0.09 3.03 6.22 -2.38 -0.01 3.01 16 50 H 0.07 2.06 6.48 -2.39 -0.02 2.04 16 51 H 0.39 19.92 7.90 -92.71 -0.73 19.19 16 52 H 0.28 14.26 8.31 -92.70 -0.77 13.49 16 Total: -1.00 -71.42 408.74 0.15 -71.27 By element: Atomic # 1 Polarization: 55.50 SS G_CDS: -1.01 Total: 54.49 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 5.70 Total: 9.17 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -6.46 Total: -125.48 kcal Atomic # 8 Polarization: -54.77 SS G_CDS: -0.11 Total: -54.88 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -71.42 0.15 -71.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318510727.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.605 kcal (2) G-P(sol) polarization free energy of solvation -71.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds