Wall clock time and date at job start Tue Mar 31 2020 20:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47589 * 2 1 4 4 H 1.09007 * 109.47066 * 304.25900 * 3 2 1 5 5 C 1.53001 * 109.47538 * 184.25924 * 3 2 1 6 6 N 1.46495 * 109.47155 * 185.00270 * 5 3 2 7 7 C 1.34775 * 120.00077 * 180.02562 * 6 5 3 8 8 O 1.21620 * 120.00002 * 359.97438 * 7 6 5 9 9 C 1.47098 * 120.00158 * 179.97438 * 7 6 5 10 10 C 1.50696 * 120.00109 * 0.02562 * 9 7 6 11 11 C 1.33000 * 120.00134 * 179.97438 * 9 7 6 12 12 C 1.51442 * 126.33719 * 359.68722 * 11 9 7 13 13 C 1.54278 * 106.85037 * 180.24224 * 12 11 9 14 14 C 1.54986 * 103.66031 * 23.48341 * 13 12 11 15 15 C 1.51841 * 126.34172 * 180.02562 * 11 9 7 16 16 N 1.46897 * 109.47187 * 64.25679 * 3 2 1 17 17 C 1.46906 * 111.00071 * 65.54788 * 16 3 2 18 18 C 1.50696 * 109.47168 * 183.46222 * 17 16 3 19 19 O 1.21287 * 120.00389 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99896 * 179.72474 * 18 17 16 21 21 C 1.37094 * 120.00076 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00082 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99947 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00057 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47262 * 59.99267 * 25 23 21 27 27 H 1.48499 * 109.47331 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47017 * 299.99354 * 25 23 21 29 29 H 1.09001 * 109.46804 * 174.73220 * 1 2 3 30 30 H 1.08995 * 109.46997 * 294.73660 * 1 2 3 31 31 H 1.08998 * 109.46846 * 54.73714 * 1 2 3 32 32 H 1.09008 * 109.46950 * 239.99694 * 2 1 3 33 33 H 1.09003 * 109.47116 * 120.00532 * 2 1 3 34 34 H 1.09003 * 109.46834 * 305.00253 * 5 3 2 35 35 H 1.08997 * 109.47231 * 64.99934 * 5 3 2 36 36 H 0.97005 * 120.00540 * 359.97438 * 6 5 3 37 37 H 1.08999 * 109.47731 * 89.99955 * 10 9 7 38 38 H 1.09005 * 109.46864 * 210.00032 * 10 9 7 39 39 H 1.09001 * 109.46937 * 329.99164 * 10 9 7 40 40 H 1.08999 * 109.99112 * 299.72565 * 12 11 9 41 41 H 1.09001 * 109.98572 * 61.03643 * 12 11 9 42 42 H 1.08999 * 110.79346 * 264.86042 * 13 12 11 43 43 H 1.09002 * 110.43423 * 141.93773 * 13 12 11 44 44 H 1.08997 * 110.83391 * 204.48906 * 14 13 12 45 45 H 1.09004 * 110.82995 * 80.91569 * 14 13 12 46 46 H 1.09002 * 110.44094 * 274.92487 * 15 11 9 47 47 H 1.08998 * 110.44405 * 37.32639 * 15 11 9 48 48 H 1.00895 * 111.00401 * 189.50535 * 16 3 2 49 49 H 1.08995 * 109.46837 * 63.46295 * 17 16 3 50 50 H 1.08999 * 109.46857 * 303.46158 * 17 16 3 51 51 H 0.96996 * 119.99860 * 0.02562 * 20 18 17 52 52 H 0.97009 * 119.99967 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6158 1.9778 -0.8494 5 6 3.5664 1.4437 -0.1071 6 7 4.0632 2.8166 0.0129 7 6 5.3866 3.0626 -0.0530 8 8 6.1686 2.1446 -0.2115 9 6 5.8854 4.4412 0.0670 10 6 4.9167 5.5785 0.2640 11 6 7.1915 4.6838 0.0025 12 6 8.2873 3.6551 -0.1833 13 6 9.6254 4.4228 -0.1875 14 6 9.3010 5.7280 0.5827 15 6 7.8606 6.0427 0.1088 16 7 1.6363 2.1046 1.2475 17 6 2.2958 1.4898 2.4073 18 6 1.7939 2.1372 3.6722 19 8 0.9677 3.0233 3.6134 20 7 2.2586 1.7275 4.8691 21 6 1.8024 2.3168 6.0198 22 1 1.0704 3.1091 5.9672 23 6 2.2819 1.8948 7.2538 24 7 3.1723 0.9304 7.3178 25 14 1.6598 2.6973 8.8218 26 1 0.1904 2.5097 8.9245 27 1 2.3216 2.0712 9.9945 28 1 1.9727 4.1487 8.7928 29 1 -0.3633 -1.0234 -0.0944 30 1 -0.3633 0.4300 0.9333 31 1 -0.3633 0.5933 -0.8391 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9872 0.8338 0.6923 35 1 3.8632 1.0329 -1.0721 36 1 3.4395 3.5489 0.1389 37 1 4.7554 5.7380 1.3301 38 1 5.3258 6.4855 -0.1813 39 1 3.9681 5.3349 -0.2146 40 1 8.2691 2.9388 0.6381 41 1 8.1546 3.1369 -1.1330 42 1 9.9394 4.6476 -1.2068 43 1 10.3936 3.8514 0.3336 44 1 9.9861 6.5266 0.2980 45 1 9.3265 5.5593 1.6593 46 1 7.8790 6.5351 -0.8635 47 1 7.3447 6.6650 0.8400 48 1 1.8236 3.0952 1.2081 49 1 3.3737 1.6315 2.3296 50 1 2.0702 0.4237 2.4306 51 1 2.9164 1.0162 4.9164 52 1 3.5068 0.6355 8.1794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318510736.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:25 Heat of formation + Delta-G solvation = -79.282611 kcal Electronic energy + Delta-G solvation = -29928.136190 eV Core-core repulsion = 25926.766120 eV Total energy + Delta-G solvation = -4001.370070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.21401 -38.80731 -37.97723 -37.11764 -34.26130 -33.91462 -33.32248 -31.95890 -31.17070 -29.12825 -28.75402 -27.63581 -26.51283 -24.76444 -24.18351 -23.10423 -20.92343 -20.81143 -20.29545 -19.10219 -18.49830 -17.89546 -16.87161 -16.55431 -16.19460 -15.96393 -15.40606 -15.18175 -14.79386 -14.50558 -14.25315 -14.10192 -13.83779 -13.63211 -13.56399 -13.41836 -13.37807 -12.92173 -12.72418 -12.63048 -12.49841 -12.15390 -12.07457 -11.89930 -11.62644 -11.46688 -11.42411 -11.30823 -11.22390 -11.17965 -11.00543 -10.85133 -10.82726 -10.55812 -10.43641 -10.20006 -9.71674 -9.48562 -9.20678 -8.82421 -8.48575 -8.06954 -7.94593 -6.40020 -3.81048 1.27912 3.09740 3.20539 3.25726 3.26296 3.30469 3.92414 4.09637 4.20440 4.34049 4.43612 4.66551 4.73591 4.78294 4.88084 4.91464 5.03063 5.14197 5.19522 5.21719 5.27845 5.34438 5.38845 5.45498 5.49861 5.53849 5.54665 5.56393 5.64951 5.69103 5.79449 5.81172 5.82308 5.86016 5.93546 5.98267 6.01645 6.09698 6.10016 6.24126 6.30612 6.32760 6.36729 6.45847 6.55592 7.15395 7.45115 7.55976 7.56431 8.07221 8.21592 8.62724 9.19133 9.56046 10.07453 10.77573 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007838 B = 0.003274 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.665622 B = 8550.307830 C =11064.571751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.088 0.912 5 C 0.081 3.919 6 N -0.726 5.726 7 C 0.557 3.443 8 O -0.542 6.542 9 C -0.190 4.190 10 C -0.112 4.112 11 C -0.036 4.036 12 C -0.091 4.091 13 C -0.129 4.129 14 C -0.124 4.124 15 C -0.099 4.099 16 N -0.652 5.652 17 C 0.043 3.957 18 C 0.442 3.558 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.398 0.602 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.344 0.656 49 H 0.047 0.953 50 H 0.089 0.911 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.407 5.245 -18.123 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.035 4.035 4 H 0.106 0.894 5 C -0.044 4.044 6 N -0.379 5.379 7 C 0.346 3.654 8 O -0.421 6.421 9 C -0.193 4.193 10 C -0.169 4.169 11 C -0.038 4.038 12 C -0.127 4.127 13 C -0.167 4.167 14 C -0.162 4.162 15 C -0.136 4.136 16 N -0.284 5.284 17 C -0.089 4.089 18 C 0.227 3.773 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.234 0.766 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.097 0.903 48 H 0.163 0.837 49 H 0.065 0.935 50 H 0.107 0.893 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.897 4.714 -18.019 20.230 hybrid contribution 0.744 0.499 0.881 1.257 sum 8.641 5.213 -17.138 19.888 Atomic orbital electron populations 1.21621 0.94636 1.00580 1.03055 1.21504 0.97318 0.94330 1.01988 1.21985 0.90608 0.97260 0.93621 0.89398 1.22174 0.96388 0.83293 1.02585 1.45890 1.07517 1.09751 1.74776 1.18256 0.81978 0.88848 0.76293 1.90765 1.55620 1.46170 1.49511 1.20740 0.94239 0.93956 1.10324 1.20724 0.97510 0.95865 1.02779 1.22715 0.93015 0.96966 0.91110 1.21266 0.91215 0.96625 1.03612 1.22473 0.97469 0.96346 1.00392 1.22523 0.95436 0.97678 1.00545 1.21565 0.95727 0.94275 1.02064 1.60207 1.60667 1.07368 1.00113 1.21774 0.96420 1.00038 0.90663 1.19790 0.86164 0.86890 0.84412 1.90513 1.35863 1.33668 1.86765 1.41856 1.38964 1.34527 1.04647 1.19638 1.22747 1.17657 0.82914 0.88009 1.25257 0.96517 0.96667 0.99452 1.69611 1.29870 1.28079 1.26683 0.85932 0.78928 0.79140 0.80295 1.19890 1.20981 1.19940 0.93532 0.91026 0.93227 0.91836 0.91428 0.90898 0.91264 0.76564 0.90673 0.91207 0.91829 0.89557 0.89905 0.91509 0.91252 0.91075 0.90979 0.89670 0.90302 0.83669 0.93520 0.89329 0.77528 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.73 37.16 0.36 -1.27 16 2 C -0.11 -1.25 5.31 -26.73 -0.14 -1.39 16 3 C 0.08 0.87 2.71 -67.72 -0.18 0.69 16 4 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 5 C 0.08 0.98 4.47 -4.04 -0.02 0.96 16 6 N -0.73 -8.82 5.25 -61.49 -0.32 -9.14 16 7 C 0.56 7.80 7.75 -12.67 -0.10 7.70 16 8 O -0.54 -9.07 14.11 5.26 0.07 -8.99 16 9 C -0.19 -2.24 6.00 -102.85 -0.62 -2.86 16 10 C -0.11 -1.05 9.16 36.00 0.33 -0.72 16 11 C -0.04 -0.40 6.12 -100.24 -0.61 -1.02 16 12 C -0.09 -1.02 4.81 -26.85 -0.13 -1.15 16 13 C -0.13 -1.10 6.88 -25.01 -0.17 -1.28 16 14 C -0.12 -0.98 6.94 -24.70 -0.17 -1.15 16 15 C -0.10 -0.83 5.66 -26.34 -0.15 -0.98 16 16 N -0.65 -9.66 5.41 -107.99 -0.58 -10.25 16 17 C 0.04 0.76 5.30 -4.97 -0.03 0.73 16 18 C 0.44 10.34 7.83 -10.99 -0.09 10.26 16 19 O -0.58 -15.54 15.85 5.55 0.09 -15.45 16 20 N -0.56 -14.37 5.29 -10.97 -0.06 -14.43 16 21 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 25 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.07 0.81 6.28 -51.93 -0.33 0.49 16 34 H 0.07 1.01 6.71 -51.93 -0.35 0.66 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.40 4.27 5.33 -40.82 -0.22 4.05 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.54 7.22 -51.93 -0.37 0.16 16 39 H 0.06 0.53 6.70 -51.93 -0.35 0.18 16 40 H 0.09 1.15 7.67 -51.93 -0.40 0.75 16 41 H 0.08 1.01 7.68 -51.93 -0.40 0.61 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.08 0.62 7.68 -51.93 -0.40 0.22 16 48 H 0.34 5.11 7.29 -39.29 -0.29 4.83 16 49 H 0.05 0.80 6.49 -51.93 -0.34 0.46 16 50 H 0.09 1.46 6.22 -51.93 -0.32 1.14 16 51 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 52 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 409.77 15.07 6.18 6.18 Total: -1.00 -32.44 409.77 -9.53 -41.98 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -8.65 Total: 17.53 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.96 Total: 0.49 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.24 Total: -57.87 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: 0.16 Total: -24.44 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.44 -9.53 -41.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318510736.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.306 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds