Wall clock time and date at job start Tue Mar 31 2020 20:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47589 * 2 1 4 4 H 1.09007 * 109.47066 * 304.25900 * 3 2 1 5 5 C 1.53001 * 109.47538 * 184.25924 * 3 2 1 6 6 N 1.46495 * 109.47155 * 185.00270 * 5 3 2 7 7 C 1.34775 * 120.00077 * 180.02562 * 6 5 3 8 8 O 1.21620 * 120.00002 * 359.97438 * 7 6 5 9 9 C 1.47098 * 120.00158 * 179.97438 * 7 6 5 10 10 C 1.50696 * 120.00109 * 0.02562 * 9 7 6 11 11 C 1.33000 * 120.00134 * 179.97438 * 9 7 6 12 12 C 1.51442 * 126.33719 * 359.68722 * 11 9 7 13 13 C 1.54278 * 106.85037 * 180.24224 * 12 11 9 14 14 C 1.54986 * 103.66031 * 23.48341 * 13 12 11 15 15 C 1.51841 * 126.34172 * 180.02562 * 11 9 7 16 16 N 1.46897 * 109.47187 * 64.25679 * 3 2 1 17 17 C 1.46906 * 111.00071 * 65.54788 * 16 3 2 18 18 C 1.50696 * 109.47168 * 183.46222 * 17 16 3 19 19 O 1.21287 * 120.00389 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99896 * 179.72474 * 18 17 16 21 21 C 1.37094 * 120.00076 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00082 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99947 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00057 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47262 * 59.99267 * 25 23 21 27 27 H 1.48499 * 109.47331 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47017 * 299.99354 * 25 23 21 29 29 H 1.09001 * 109.46804 * 174.73220 * 1 2 3 30 30 H 1.08995 * 109.46997 * 294.73660 * 1 2 3 31 31 H 1.08998 * 109.46846 * 54.73714 * 1 2 3 32 32 H 1.09008 * 109.46950 * 239.99694 * 2 1 3 33 33 H 1.09003 * 109.47116 * 120.00532 * 2 1 3 34 34 H 1.09003 * 109.46834 * 305.00253 * 5 3 2 35 35 H 1.08997 * 109.47231 * 64.99934 * 5 3 2 36 36 H 0.97005 * 120.00540 * 359.97438 * 6 5 3 37 37 H 1.08999 * 109.47731 * 89.99955 * 10 9 7 38 38 H 1.09005 * 109.46864 * 210.00032 * 10 9 7 39 39 H 1.09001 * 109.46937 * 329.99164 * 10 9 7 40 40 H 1.08999 * 109.99112 * 299.72565 * 12 11 9 41 41 H 1.09001 * 109.98572 * 61.03643 * 12 11 9 42 42 H 1.08999 * 110.79346 * 264.86042 * 13 12 11 43 43 H 1.09002 * 110.43423 * 141.93773 * 13 12 11 44 44 H 1.08997 * 110.83391 * 204.48906 * 14 13 12 45 45 H 1.09004 * 110.82995 * 80.91569 * 14 13 12 46 46 H 1.09002 * 110.44094 * 274.92487 * 15 11 9 47 47 H 1.08998 * 110.44405 * 37.32639 * 15 11 9 48 48 H 1.00895 * 111.00401 * 189.50535 * 16 3 2 49 49 H 1.08995 * 109.46837 * 63.46295 * 17 16 3 50 50 H 1.08999 * 109.46857 * 303.46158 * 17 16 3 51 51 H 0.96996 * 119.99860 * 0.02562 * 20 18 17 52 52 H 0.97009 * 119.99967 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6158 1.9778 -0.8494 5 6 3.5664 1.4437 -0.1071 6 7 4.0632 2.8166 0.0129 7 6 5.3866 3.0626 -0.0530 8 8 6.1686 2.1446 -0.2115 9 6 5.8854 4.4412 0.0670 10 6 4.9167 5.5785 0.2640 11 6 7.1915 4.6838 0.0025 12 6 8.2873 3.6551 -0.1833 13 6 9.6254 4.4228 -0.1875 14 6 9.3010 5.7280 0.5827 15 6 7.8606 6.0427 0.1088 16 7 1.6363 2.1046 1.2475 17 6 2.2958 1.4898 2.4073 18 6 1.7939 2.1372 3.6722 19 8 0.9677 3.0233 3.6134 20 7 2.2586 1.7275 4.8691 21 6 1.8024 2.3168 6.0198 22 1 1.0704 3.1091 5.9672 23 6 2.2819 1.8948 7.2538 24 7 3.1723 0.9304 7.3178 25 14 1.6598 2.6973 8.8218 26 1 0.1904 2.5097 8.9245 27 1 2.3216 2.0712 9.9945 28 1 1.9727 4.1487 8.7928 29 1 -0.3633 -1.0234 -0.0944 30 1 -0.3633 0.4300 0.9333 31 1 -0.3633 0.5933 -0.8391 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9872 0.8338 0.6923 35 1 3.8632 1.0329 -1.0721 36 1 3.4395 3.5489 0.1389 37 1 4.7554 5.7380 1.3301 38 1 5.3258 6.4855 -0.1813 39 1 3.9681 5.3349 -0.2146 40 1 8.2691 2.9388 0.6381 41 1 8.1546 3.1369 -1.1330 42 1 9.9394 4.6476 -1.2068 43 1 10.3936 3.8514 0.3336 44 1 9.9861 6.5266 0.2980 45 1 9.3265 5.5593 1.6593 46 1 7.8790 6.5351 -0.8635 47 1 7.3447 6.6650 0.8400 48 1 1.8236 3.0952 1.2081 49 1 3.3737 1.6315 2.3296 50 1 2.0702 0.4237 2.4306 51 1 2.9164 1.0162 4.9164 52 1 3.5068 0.6355 8.1794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318510736.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:24 Heat of formation + Delta-G solvation = -101.437134 kcal Electronic energy + Delta-G solvation = -29929.096882 eV Core-core repulsion = 25926.766120 eV Total energy + Delta-G solvation = -4002.330762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.26602 -40.28462 -39.13467 -38.33707 -35.97015 -35.27290 -34.18600 -33.35939 -33.01423 -29.88909 -29.84283 -28.52153 -27.94527 -26.14503 -25.53037 -24.01590 -21.87639 -21.70918 -21.52228 -20.62704 -19.88216 -19.44135 -18.34308 -17.52231 -17.22113 -17.04515 -16.82635 -16.41712 -16.18315 -15.94670 -15.56031 -15.53633 -15.12896 -14.84823 -14.53806 -14.49019 -14.27688 -14.02038 -13.85011 -13.76809 -13.47271 -13.40624 -13.28543 -13.11390 -12.88057 -12.85074 -12.65109 -12.43476 -12.34601 -12.17706 -12.13454 -11.97199 -11.90501 -11.79108 -11.55261 -11.51458 -11.48894 -10.77155 -10.35787 -10.25193 -10.02307 -9.70956 -9.38748 -8.46734 -5.95986 0.34894 1.39196 1.40766 1.52050 2.04029 2.10402 2.23657 2.28698 2.91237 3.20119 3.41284 3.50203 3.68722 3.71311 3.88521 4.02396 4.10027 4.15518 4.18385 4.27701 4.29289 4.37161 4.44035 4.46279 4.55393 4.63547 4.66389 4.67118 4.73135 4.78656 4.86752 4.90092 4.93662 4.97878 5.02460 5.09340 5.16513 5.17481 5.18931 5.34187 5.36741 5.38301 5.39862 5.47609 5.57087 5.61791 5.85474 6.06136 6.35763 6.46424 6.58486 7.11602 7.17207 7.55055 8.09682 8.70525 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007838 B = 0.003274 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.665622 B = 8550.307830 C =11064.571751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.086 3.914 4 H 0.112 0.888 5 C 0.086 3.914 6 N -0.719 5.719 7 C 0.547 3.453 8 O -0.578 6.578 9 C -0.208 4.208 10 C -0.108 4.108 11 C -0.040 4.040 12 C -0.093 4.093 13 C -0.124 4.124 14 C -0.122 4.122 15 C -0.095 4.095 16 N -0.658 5.658 17 C 0.064 3.936 18 C 0.441 3.559 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.081 0.919 23 C -0.014 4.014 24 N -0.923 5.923 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.056 0.944 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.406 0.594 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.086 0.914 48 H 0.344 0.656 49 H 0.052 0.948 50 H 0.101 0.899 51 H 0.393 0.607 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.690 6.376 -19.145 21.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C -0.024 4.024 4 H 0.130 0.870 5 C -0.040 4.040 6 N -0.372 5.372 7 C 0.337 3.663 8 O -0.460 6.460 9 C -0.211 4.211 10 C -0.164 4.164 11 C -0.041 4.041 12 C -0.129 4.129 13 C -0.162 4.162 14 C -0.159 4.159 15 C -0.132 4.132 16 N -0.290 5.290 17 C -0.068 4.068 18 C 0.228 3.772 19 O -0.503 6.503 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.099 0.901 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.195 1.195 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.244 0.756 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.082 0.918 46 H 0.124 0.876 47 H 0.105 0.895 48 H 0.163 0.837 49 H 0.070 0.930 50 H 0.119 0.881 51 H 0.226 0.774 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.167 5.842 -19.058 21.542 hybrid contribution 0.657 0.096 1.115 1.298 sum 8.824 5.938 -17.944 20.859 Atomic orbital electron populations 1.21570 0.94839 1.01251 1.01840 1.21539 0.97013 0.93927 1.02659 1.22054 0.90158 0.97688 0.92471 0.87025 1.22127 0.96493 0.83039 1.02300 1.45861 1.07235 1.10102 1.73992 1.18747 0.82205 0.89571 0.75744 1.90743 1.56492 1.47400 1.51376 1.20902 0.95176 0.93501 1.11475 1.20736 0.97499 0.95739 1.02445 1.23084 0.92836 0.98481 0.89745 1.21241 0.93392 0.96638 1.01678 1.22466 0.95756 0.96413 1.01550 1.22544 0.95671 0.97818 0.99910 1.21644 0.95551 0.92633 1.03373 1.60201 1.60664 1.07540 1.00548 1.21518 0.96443 1.00095 0.88775 1.20777 0.84899 0.85981 0.85511 1.90481 1.37193 1.35091 1.87515 1.41950 1.39416 1.34845 1.04997 1.19647 1.23672 1.18392 0.84563 0.90055 1.26069 0.96328 0.96937 1.02032 1.69685 1.30287 1.28678 1.27696 0.84985 0.78437 0.78337 0.76573 1.19602 1.19633 1.19504 0.92465 0.94138 0.91979 0.89325 0.92635 0.92851 0.90378 0.75647 0.91566 0.89156 0.90885 0.92400 0.91347 0.90008 0.91039 0.88726 0.91848 0.87627 0.89535 0.83668 0.93006 0.88122 0.77376 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.73 71.98 0.70 -2.25 16 2 C -0.11 -2.29 5.31 30.59 0.16 -2.13 16 3 C 0.09 1.83 2.71 44.91 0.12 1.95 16 4 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 5 C 0.09 1.99 4.47 86.38 0.39 2.38 16 6 N -0.72 -17.12 5.25 -466.72 -2.45 -19.57 16 7 C 0.55 15.49 7.75 86.57 0.67 16.16 16 8 O -0.58 -20.07 14.11 -4.09 -0.06 -20.12 16 9 C -0.21 -4.85 6.00 -18.71 -0.11 -4.96 16 10 C -0.11 -1.88 9.16 71.23 0.65 -1.23 16 11 C -0.04 -0.86 6.12 -17.01 -0.10 -0.96 16 12 C -0.09 -2.15 4.81 30.52 0.15 -2.00 16 13 C -0.12 -2.00 6.88 31.71 0.22 -1.78 16 14 C -0.12 -1.68 6.94 31.91 0.22 -1.46 16 15 C -0.10 -1.39 5.66 30.85 0.17 -1.21 16 16 N -0.66 -19.04 5.41 -495.58 -2.68 -21.72 16 17 C 0.06 2.24 5.30 85.55 0.45 2.69 16 18 C 0.44 21.05 7.83 87.66 0.69 21.74 16 19 O -0.62 -33.51 15.85 -3.05 -0.05 -33.56 16 20 N -0.58 -30.12 5.29 -307.00 -1.62 -31.75 16 21 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 22 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.89 13.05 21.66 0.28 -50.61 16 25 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.04 1.12 7.88 -2.39 -0.02 1.10 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.05 1.27 6.28 -2.39 -0.01 1.25 16 34 H 0.05 1.47 6.71 -2.39 -0.02 1.45 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.41 8.33 5.33 -92.70 -0.49 7.84 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.19 7.22 -2.38 -0.02 1.17 16 39 H 0.07 1.10 6.70 -2.39 -0.02 1.09 16 40 H 0.06 1.65 7.67 -2.39 -0.02 1.63 16 41 H 0.07 1.75 7.68 -2.39 -0.02 1.73 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.09 1.16 7.68 -2.39 -0.02 1.14 16 48 H 0.34 9.98 7.29 -89.70 -0.65 9.33 16 49 H 0.05 1.78 6.49 -2.39 -0.02 1.77 16 50 H 0.10 3.31 6.22 -2.39 -0.01 3.30 16 51 H 0.39 20.01 7.90 -92.71 -0.73 19.27 16 52 H 0.28 14.35 8.31 -92.70 -0.77 13.58 16 Total: -1.00 -71.94 409.77 0.17 -71.77 By element: Atomic # 1 Polarization: 52.84 SS G_CDS: -0.93 Total: 51.90 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 5.66 Total: 8.34 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -6.47 Total: -123.65 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -0.11 Total: -53.69 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -71.94 0.17 -71.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318510736.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.672 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds