Wall clock time and date at job start Tue Mar 31 2020 20:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47020 * 2 1 4 4 H 1.08994 * 109.47173 * 55.37091 * 3 2 1 5 5 C 1.52994 * 109.46819 * 175.37854 * 3 2 1 6 6 N 1.46503 * 109.47073 * 174.99602 * 5 3 2 7 7 C 1.34774 * 120.00101 * 179.97438 * 6 5 3 8 8 O 1.21615 * 120.00012 * 359.97438 * 7 6 5 9 9 C 1.47108 * 120.00023 * 180.02562 * 7 6 5 10 10 C 1.31554 * 119.85243 * 180.02562 * 9 7 6 11 11 C 1.51408 * 120.29326 * 179.97438 * 10 9 7 12 12 C 1.53043 * 108.72437 * 288.31941 * 11 10 9 13 13 C 1.52028 * 110.67451 * 85.53024 * 12 11 10 14 14 C 1.51779 * 113.98933 * 293.27755 * 13 12 11 15 15 C 1.51407 * 119.85172 * 359.97243 * 9 7 6 16 16 N 1.46907 * 109.46829 * 295.37290 * 3 2 1 17 17 C 1.46896 * 111.00372 * 302.89058 * 16 3 2 18 18 C 1.50699 * 109.47310 * 185.63580 * 17 16 3 19 19 O 1.21291 * 119.99871 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00125 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00140 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00200 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99735 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00725 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99665 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47026 * 60.00077 * 25 23 21 27 27 H 1.48500 * 109.47083 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47188 * 300.00114 * 25 23 21 29 29 H 1.09002 * 109.47153 * 298.73262 * 1 2 3 30 30 H 1.09001 * 109.46919 * 58.72880 * 1 2 3 31 31 H 1.08994 * 109.47133 * 178.73439 * 1 2 3 32 32 H 1.09001 * 109.46738 * 239.99775 * 2 1 3 33 33 H 1.08994 * 109.46800 * 119.99575 * 2 1 3 34 34 H 1.09004 * 109.47518 * 54.99740 * 5 3 2 35 35 H 1.08996 * 109.47138 * 294.99645 * 5 3 2 36 36 H 0.97005 * 119.99761 * 359.97438 * 6 5 3 37 37 H 1.08001 * 119.85557 * 359.95012 * 10 9 7 38 38 H 1.09001 * 109.61976 * 48.13292 * 11 10 9 39 39 H 1.08995 * 109.62339 * 168.50083 * 11 10 9 40 40 H 1.09002 * 109.20593 * 206.14568 * 12 11 10 41 41 H 1.09001 * 109.20997 * 325.45908 * 12 11 10 42 42 H 1.08996 * 108.55417 * 172.09670 * 13 12 11 43 43 H 1.08997 * 108.51431 * 54.43464 * 13 12 11 44 44 H 1.09001 * 109.21205 * 306.57388 * 14 13 12 45 45 H 1.09000 * 109.17357 * 187.23004 * 14 13 12 46 46 H 1.09000 * 109.61967 * 11.33958 * 15 9 7 47 47 H 1.09002 * 109.61698 * 131.70516 * 15 9 7 48 48 H 1.00901 * 110.99537 * 66.84188 * 16 3 2 49 49 H 1.09002 * 109.46967 * 305.63965 * 17 16 3 50 50 H 1.09003 * 109.46867 * 65.63272 * 17 16 3 51 51 H 0.97009 * 119.99717 * 0.02562 * 20 18 17 52 52 H 0.96995 * 120.00762 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6106 1.9797 0.8456 5 6 3.5656 1.4441 0.1162 6 7 4.0631 2.8168 -0.0037 7 6 5.3861 3.0629 0.0695 8 8 6.1670 2.1454 0.2355 9 6 5.8857 4.4413 -0.0504 10 6 7.1777 4.6782 0.0209 11 6 7.7028 6.0930 -0.1018 12 6 7.5513 6.5490 -1.5548 13 6 6.1616 7.1157 -1.7973 14 6 5.0493 6.0883 -1.6932 15 6 4.9105 5.5811 -0.2566 16 7 1.6437 2.1020 -1.2515 17 6 2.1483 1.3650 -2.4177 18 6 1.8428 2.1409 -3.6730 19 8 1.2623 3.2036 -3.6029 20 7 2.2156 1.6546 -4.8734 21 6 1.9373 2.3602 -6.0153 22 1 1.4197 3.3060 -5.9531 23 6 2.3222 1.8589 -7.2528 24 7 2.9524 0.7084 -7.3287 25 14 1.9423 2.8201 -8.8089 26 1 2.5979 4.1508 -8.7412 27 1 2.4543 2.0760 -9.9877 28 1 0.4733 2.9978 -8.9349 29 1 -0.3633 0.4940 0.9011 30 1 -0.3633 0.5335 -0.8784 31 1 -0.3633 -1.0273 -0.0227 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.9912 0.8325 -0.6794 35 1 3.8566 1.0353 1.0838 36 1 3.4402 3.5486 -0.1358 37 1 7.8670 3.8598 0.1680 38 1 7.1313 6.7533 0.5505 39 1 8.7548 6.1189 0.1821 40 1 8.2985 7.3127 -1.7707 41 1 7.7087 5.6971 -2.2163 42 1 6.1358 7.5564 -2.7939 43 1 5.9768 7.9036 -1.0671 44 1 5.2747 5.2479 -2.3499 45 1 4.1099 6.5449 -2.0047 46 1 3.8931 5.2268 -0.0905 47 1 5.1362 6.3867 0.4421 48 1 0.6420 2.2134 -1.2999 49 1 3.2263 1.2329 -2.3254 50 1 1.6656 0.3889 -2.4673 51 1 2.6802 0.8048 -4.9293 52 1 3.2214 0.3586 -8.1925 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318516758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:52 Heat of formation + Delta-G solvation = -79.592441 kcal Electronic energy + Delta-G solvation = -30390.458209 eV Core-core repulsion = 26389.074704 eV Total energy + Delta-G solvation = -4001.383505 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.09104 -38.79677 -37.90299 -37.17487 -34.16896 -33.86797 -32.59322 -31.95440 -31.76249 -31.15377 -28.73236 -26.64219 -25.73517 -24.57300 -24.12945 -23.17871 -21.06737 -20.42732 -20.32480 -19.16696 -18.16090 -17.85573 -17.19109 -16.81678 -16.11327 -15.60914 -15.02667 -14.90652 -14.85493 -14.78943 -14.24186 -14.18469 -13.92932 -13.86509 -13.65630 -13.48245 -13.34633 -13.12956 -12.92100 -12.51172 -12.30316 -12.05889 -11.91522 -11.76718 -11.71098 -11.49866 -11.35666 -11.15702 -11.05637 -10.86285 -10.81150 -10.76622 -10.69546 -10.49133 -10.44153 -10.20430 -9.69098 -9.48613 -9.12386 -8.81418 -8.49859 -8.07134 -7.94752 -6.40242 -3.81214 1.47690 3.20117 3.25980 3.29136 3.30782 3.45588 3.92466 4.10407 4.33991 4.56205 4.63063 4.71765 4.79065 4.85559 4.92594 4.97846 4.98707 5.11856 5.17332 5.25957 5.29126 5.31152 5.40778 5.44664 5.53509 5.58190 5.60055 5.66450 5.67944 5.76334 5.76679 5.82625 5.87635 5.97973 6.01914 6.08620 6.09286 6.11198 6.17966 6.19988 6.28056 6.40431 6.44255 6.58687 6.60425 7.14837 7.55682 7.57862 7.74342 8.07025 8.40161 8.62578 9.19012 9.55957 10.07344 10.77423 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007353 B = 0.003924 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3807.180346 B = 7134.574287 C = 9891.198011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.089 0.911 5 C 0.126 3.874 6 N -0.708 5.708 7 C 0.551 3.449 8 O -0.556 6.556 9 C -0.173 4.173 10 C -0.077 4.077 11 C -0.094 4.094 12 C -0.115 4.115 13 C -0.118 4.118 14 C -0.116 4.116 15 C -0.078 4.078 16 N -0.658 5.658 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.411 0.589 37 H 0.123 0.877 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.352 0.648 49 H 0.086 0.914 50 H 0.047 0.953 51 H 0.391 0.609 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 5.494 16.942 18.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.107 0.893 5 C 0.002 3.998 6 N -0.360 5.360 7 C 0.339 3.661 8 O -0.437 6.437 9 C -0.176 4.176 10 C -0.096 4.096 11 C -0.131 4.131 12 C -0.153 4.153 13 C -0.155 4.155 14 C -0.154 4.154 15 C -0.116 4.116 16 N -0.290 5.290 17 C -0.089 4.089 18 C 0.228 3.772 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.249 0.751 37 H 0.141 0.859 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.172 0.828 49 H 0.104 0.896 50 H 0.065 0.935 51 H 0.224 0.776 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.687 5.906 16.914 18.519 hybrid contribution -0.748 -0.791 -1.049 1.511 sum 3.939 5.115 15.866 17.129 Atomic orbital electron populations 1.21756 0.95278 1.01981 1.01997 1.22211 0.96743 0.97975 1.03086 1.21917 0.94323 0.93537 0.93983 0.89311 1.21389 0.92857 0.83888 1.01669 1.45791 1.07300 1.10032 1.72875 1.18425 0.82315 0.89011 0.76358 1.90757 1.56174 1.46130 1.50604 1.21231 0.96034 0.93642 1.06723 1.23279 0.95446 0.98314 0.92595 1.20935 1.01193 0.93374 0.97622 1.21318 0.97220 1.01064 0.95672 1.21171 0.94223 0.98297 1.01857 1.21266 0.98852 0.99353 0.95917 1.20744 0.97591 0.95565 0.97664 1.60187 1.19410 1.49898 0.99546 1.21758 1.01169 0.95291 0.90641 1.19784 0.85232 0.87923 0.84251 1.90510 1.46012 1.23655 1.86526 1.41858 1.51552 1.21804 1.04833 1.19628 1.35265 1.04790 0.83201 0.88030 1.25246 0.96851 0.96379 0.99381 1.69600 1.39543 1.18678 1.26456 0.85945 0.78849 0.79281 0.80297 1.19914 1.20985 1.19937 0.92586 0.92436 0.92502 0.90989 0.91340 0.91431 0.91387 0.75097 0.85872 0.90463 0.91005 0.91578 0.91554 0.92078 0.92404 0.91359 0.91005 0.91145 0.90603 0.82783 0.89600 0.93462 0.77558 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.70 37.16 0.36 -1.10 16 2 C -0.16 -1.61 5.10 -26.73 -0.14 -1.75 16 3 C 0.07 0.81 2.70 -67.71 -0.18 0.63 16 4 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 5 C 0.13 1.60 4.76 -4.04 -0.02 1.58 16 6 N -0.71 -9.55 5.35 -61.49 -0.33 -9.88 16 7 C 0.55 8.38 7.75 -12.66 -0.10 8.28 16 8 O -0.56 -10.21 16.18 5.26 0.09 -10.13 16 9 C -0.17 -2.20 5.10 -102.53 -0.52 -2.73 16 10 C -0.08 -0.89 8.93 -35.81 -0.32 -1.21 16 11 C -0.09 -0.83 5.61 -27.51 -0.15 -0.99 16 12 C -0.12 -1.08 5.69 -27.20 -0.15 -1.24 16 13 C -0.12 -1.17 5.27 -27.85 -0.15 -1.31 16 14 C -0.12 -1.38 5.66 -27.36 -0.15 -1.54 16 15 C -0.08 -0.85 5.36 -27.54 -0.15 -1.00 16 16 N -0.66 -9.44 5.32 -107.99 -0.57 -10.02 16 17 C 0.04 0.75 5.31 -4.98 -0.03 0.72 16 18 C 0.44 10.21 7.83 -10.99 -0.09 10.13 16 19 O -0.58 -15.24 15.90 5.55 0.09 -15.15 16 20 N -0.56 -14.25 5.29 -10.97 -0.06 -14.31 16 21 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 25 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.63 6.87 -51.93 -0.36 0.27 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.81 6.23 -51.93 -0.32 0.48 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.97 6.61 -51.93 -0.34 0.63 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.41 5.28 5.92 -40.82 -0.24 5.04 16 37 H 0.12 1.55 7.44 -52.49 -0.39 1.16 16 38 H 0.08 0.62 6.75 -51.93 -0.35 0.27 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.73 7.86 -51.93 -0.41 0.32 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.49 7.88 -51.93 -0.41 0.08 16 44 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.07 0.76 5.99 -51.93 -0.31 0.44 16 47 H 0.08 0.69 6.76 -51.93 -0.35 0.34 16 48 H 0.35 5.15 7.29 -39.29 -0.29 4.86 16 49 H 0.09 1.48 6.22 -51.93 -0.32 1.15 16 50 H 0.05 0.74 6.48 -51.93 -0.34 0.41 16 51 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 52 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 404.70 15.07 6.10 6.10 Total: -1.00 -32.06 404.70 -9.50 -41.56 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -8.48 Total: 19.19 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.03 Total: 0.54 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.24 Total: -58.18 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: 0.17 Total: -25.28 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.06 -9.50 -41.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318516758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.035 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds