Wall clock time and date at job start Tue Mar 31 2020 20:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46671 * 2 1 4 4 H 1.08997 * 109.47251 * 304.25529 * 3 2 1 5 5 C 1.53007 * 109.46885 * 184.26191 * 3 2 1 6 6 N 1.46505 * 109.47098 * 184.99814 * 5 3 2 7 7 C 1.34769 * 119.99825 * 179.97438 * 6 5 3 8 8 O 1.21619 * 120.00282 * 359.97438 * 7 6 5 9 9 C 1.47105 * 119.99693 * 180.02562 * 7 6 5 10 10 C 1.31561 * 119.85335 * 179.97438 * 9 7 6 11 11 C 1.51406 * 120.29469 * 179.97438 * 10 9 7 12 12 C 1.53046 * 108.57064 * 71.59495 * 11 10 9 13 13 C 1.51780 * 110.80530 * 274.28994 * 12 11 10 14 14 C 1.51776 * 113.84585 * 66.93559 * 13 12 11 15 15 C 1.51408 * 119.85605 * 359.72420 * 9 7 6 16 16 N 1.46902 * 109.47304 * 64.26340 * 3 2 1 17 17 C 1.46893 * 110.99920 * 65.54746 * 16 3 2 18 18 C 1.50698 * 109.46932 * 183.46152 * 17 16 3 19 19 O 1.21291 * 120.00435 * 359.97438 * 18 17 16 20 20 N 1.34780 * 120.00278 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00393 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99620 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00044 * 180.02562 * 21 20 18 24 24 N 1.31419 * 120.00319 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00190 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47239 * 59.99560 * 25 23 21 27 27 H 1.48494 * 109.47472 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46855 * 299.99984 * 25 23 21 29 29 H 1.09004 * 109.46931 * 294.73139 * 1 2 3 30 30 H 1.08996 * 109.47355 * 54.73381 * 1 2 3 31 31 H 1.09004 * 109.46783 * 174.73581 * 1 2 3 32 32 H 1.08997 * 109.47200 * 240.00671 * 2 1 3 33 33 H 1.08994 * 109.47731 * 120.00002 * 2 1 3 34 34 H 1.08998 * 109.47228 * 305.00027 * 5 3 2 35 35 H 1.08996 * 109.47357 * 65.00313 * 5 3 2 36 36 H 0.97000 * 119.99635 * 0.02562 * 6 5 3 37 37 H 1.08001 * 119.85513 * 359.95439 * 10 9 7 38 38 H 1.08996 * 109.62281 * 191.31296 * 11 10 9 39 39 H 1.09002 * 109.62571 * 311.68813 * 11 10 9 40 40 H 1.09001 * 109.21043 * 34.62716 * 12 11 10 41 41 H 1.08999 * 109.21329 * 153.99218 * 12 11 10 42 42 H 1.08998 * 108.60581 * 188.06899 * 13 12 11 43 43 H 1.09002 * 108.60933 * 305.94885 * 13 12 11 44 44 H 1.09004 * 109.20946 * 53.40790 * 14 13 12 45 45 H 1.09002 * 109.20795 * 172.75723 * 14 13 12 46 46 H 1.08998 * 109.61672 * 228.16531 * 15 9 7 47 47 H 1.09003 * 109.61376 * 348.70710 * 15 9 7 48 48 H 1.00901 * 110.99697 * 189.50021 * 16 3 2 49 49 H 1.08996 * 109.47924 * 63.46082 * 17 16 3 50 50 H 1.09006 * 109.47289 * 303.45606 * 17 16 3 51 51 H 0.97000 * 119.99745 * 0.02562 * 20 18 17 52 52 H 0.97000 * 120.00231 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6156 1.9779 -0.8494 5 6 3.5662 1.4439 -0.1072 6 7 4.0629 2.8170 0.0127 7 6 5.3864 3.0628 -0.0522 8 8 6.1685 2.1448 -0.2097 9 6 5.8852 4.4414 0.0687 10 6 7.1778 4.6781 0.0055 11 6 7.7020 6.0932 0.1282 12 6 7.5370 6.5500 1.5796 13 6 6.1495 7.1200 1.8110 14 6 5.0379 6.0924 1.7018 15 6 4.9083 5.5824 0.2597 16 7 1.6361 2.1047 1.2476 17 6 2.2958 1.4900 2.4072 18 6 1.7939 2.1373 3.6721 19 8 0.9683 3.0239 3.6134 20 7 2.2625 1.7312 4.8688 21 6 1.8055 2.3197 6.0196 22 1 1.0704 3.1091 5.9672 23 6 2.2890 1.9014 7.2532 24 7 3.1840 0.9411 7.3169 25 14 1.6670 2.7037 8.8212 26 1 0.1985 2.5106 8.9272 27 1 2.3343 2.0828 9.9935 28 1 1.9742 4.1563 8.7894 29 1 -0.3633 0.4300 0.9334 30 1 -0.3634 0.5933 -0.8390 31 1 -0.3633 -1.0234 -0.0943 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9871 0.8342 0.6922 35 1 3.8630 1.0332 -1.0722 36 1 3.4392 3.5490 0.1395 37 1 7.8681 3.8594 -0.1342 38 1 8.7568 6.1179 -0.1454 39 1 7.1371 6.7515 -0.5319 40 1 7.6903 5.6989 2.2431 41 1 8.2802 7.3159 1.8013 42 1 6.1171 7.5632 2.8063 43 1 5.9687 7.9045 1.0760 44 1 5.2588 5.2536 2.3620 45 1 4.0960 6.5493 2.0055 46 1 5.1439 6.3864 -0.4375 47 1 3.8927 5.2278 0.0839 48 1 1.8233 3.0954 1.2081 49 1 3.3737 1.6317 2.3295 50 1 2.0703 0.4238 2.4306 51 1 2.9230 1.0224 4.9158 52 1 3.5212 0.6488 8.1782 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318516759.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:54 Heat of formation + Delta-G solvation = -77.659711 kcal Electronic energy + Delta-G solvation = -30424.103950 eV Core-core repulsion = 26422.804254 eV Total energy + Delta-G solvation = -4001.299696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.32366 -38.81098 -38.00776 -37.17306 -34.17674 -33.88367 -32.72733 -32.06729 -31.95139 -31.17329 -28.63623 -26.62347 -25.86093 -24.65094 -24.15779 -23.19078 -21.27558 -20.53045 -20.31222 -19.10753 -18.48555 -17.90040 -17.39603 -16.79994 -16.26898 -15.58489 -15.25505 -15.05085 -14.98286 -14.51994 -14.30969 -14.20237 -13.97660 -13.77308 -13.74264 -13.48223 -13.42701 -13.19995 -13.04288 -12.64199 -12.19639 -12.15929 -11.91870 -11.84457 -11.64213 -11.45271 -11.36317 -11.23909 -11.01087 -10.93099 -10.85502 -10.82793 -10.65063 -10.56508 -10.44097 -10.20439 -9.86753 -9.48917 -9.29970 -9.05257 -8.49295 -8.07926 -7.94960 -6.40381 -3.81450 1.31601 3.06978 3.20073 3.25135 3.25984 3.30044 3.91921 4.09325 4.31838 4.41342 4.55283 4.63463 4.66799 4.75804 4.82683 4.88316 4.97360 5.12833 5.15599 5.20860 5.27295 5.29166 5.37874 5.40053 5.46814 5.52922 5.54454 5.59685 5.65669 5.78291 5.81218 5.87404 5.92714 5.96149 5.98539 6.00402 6.03199 6.09026 6.22996 6.24780 6.26604 6.31972 6.37025 6.42659 6.54898 7.14170 7.40337 7.54837 7.55622 8.06761 8.16399 8.62240 9.18730 9.55583 10.06929 10.77203 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007442 B = 0.003882 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3761.325167 B = 7211.946328 C = 9904.282384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.088 0.912 5 C 0.080 3.920 6 N -0.724 5.724 7 C 0.555 3.445 8 O -0.546 6.546 9 C -0.180 4.180 10 C -0.070 4.070 11 C -0.095 4.095 12 C -0.115 4.115 13 C -0.118 4.118 14 C -0.119 4.119 15 C -0.079 4.079 16 N -0.651 5.651 17 C 0.043 3.957 18 C 0.442 3.558 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.399 0.601 37 H 0.125 0.875 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.343 0.657 49 H 0.046 0.954 50 H 0.089 0.911 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.152 6.750 -16.936 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.035 4.035 4 H 0.106 0.894 5 C -0.046 4.046 6 N -0.377 5.377 7 C 0.344 3.656 8 O -0.425 6.425 9 C -0.183 4.183 10 C -0.089 4.089 11 C -0.132 4.132 12 C -0.153 4.153 13 C -0.156 4.156 14 C -0.156 4.156 15 C -0.116 4.116 16 N -0.283 5.283 17 C -0.089 4.089 18 C 0.227 3.773 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.236 0.764 37 H 0.142 0.858 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.163 0.837 49 H 0.064 0.936 50 H 0.107 0.893 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.629 6.228 -16.820 18.799 hybrid contribution 0.821 0.406 0.884 1.273 sum 6.451 6.635 -15.937 18.429 Atomic orbital electron populations 1.21620 0.94616 1.00589 1.03055 1.21502 0.97332 0.94298 1.02007 1.21991 0.90537 0.97307 0.93643 0.89369 1.22207 0.96472 0.83249 1.02676 1.45943 1.07570 1.09833 1.74403 1.18411 0.82064 0.89109 0.76059 1.90779 1.55870 1.46099 1.49767 1.21210 0.96126 0.93437 1.07520 1.23329 0.95415 0.98497 0.91708 1.20960 1.01359 0.93230 0.97685 1.21275 0.97273 1.01116 0.95622 1.21124 0.94160 0.98241 1.02037 1.21400 0.99074 0.99455 0.95716 1.20854 0.97199 0.95694 0.97851 1.60208 1.60651 1.07338 1.00104 1.21774 0.96387 1.00058 0.90682 1.19783 0.86158 0.86915 0.84400 1.90514 1.35941 1.33568 1.86749 1.41857 1.38687 1.34766 1.04660 1.19632 1.22523 1.17854 0.82916 0.88017 1.25250 0.96496 0.96672 0.99438 1.69609 1.29619 1.28311 1.26701 0.85938 0.78927 0.79143 0.80324 1.19882 1.20985 1.19957 0.91024 0.93223 0.93526 0.91820 0.91416 0.90834 0.91180 0.76437 0.85759 0.90835 0.90345 0.91486 0.91467 0.91904 0.92266 0.91376 0.90987 0.90277 0.91537 0.83702 0.93558 0.89330 0.77540 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.73 37.16 0.36 -1.26 16 2 C -0.11 -1.24 5.31 -26.73 -0.14 -1.38 16 3 C 0.08 0.86 2.71 -67.71 -0.18 0.68 16 4 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 5 C 0.08 0.96 4.47 -4.04 -0.02 0.94 16 6 N -0.72 -8.76 5.27 -61.49 -0.32 -9.09 16 7 C 0.55 7.80 7.75 -12.67 -0.10 7.70 16 8 O -0.55 -9.55 16.18 5.26 0.09 -9.46 16 9 C -0.18 -2.07 5.09 -102.53 -0.52 -2.59 16 10 C -0.07 -0.74 8.92 -35.81 -0.32 -1.06 16 11 C -0.10 -0.76 5.61 -27.51 -0.15 -0.91 16 12 C -0.12 -0.98 5.66 -27.33 -0.15 -1.13 16 13 C -0.12 -1.04 5.28 -27.97 -0.15 -1.19 16 14 C -0.12 -1.24 5.67 -27.09 -0.15 -1.39 16 15 C -0.08 -0.74 5.40 -27.27 -0.15 -0.89 16 16 N -0.65 -9.57 5.41 -107.99 -0.58 -10.15 16 17 C 0.04 0.75 5.30 -4.98 -0.03 0.72 16 18 C 0.44 10.26 7.83 -10.99 -0.09 10.17 16 19 O -0.58 -15.39 15.85 5.55 0.09 -15.30 16 20 N -0.56 -14.27 5.29 -10.97 -0.06 -14.33 16 21 C -0.30 -8.34 9.68 -14.94 -0.14 -8.48 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -24.69 13.05 55.50 0.72 -23.96 16 25 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 29 H 0.07 1.01 7.88 -51.93 -0.41 0.60 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.81 6.28 -51.93 -0.33 0.48 16 34 H 0.07 1.02 6.71 -51.93 -0.35 0.67 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.40 4.24 5.01 -40.82 -0.20 4.04 16 37 H 0.12 1.45 7.44 -52.49 -0.39 1.06 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.56 6.75 -51.93 -0.35 0.21 16 40 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.45 7.88 -51.93 -0.41 0.04 16 44 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.08 0.63 6.74 -51.93 -0.35 0.28 16 47 H 0.07 0.58 5.99 -51.93 -0.31 0.27 16 48 H 0.34 5.06 7.29 -39.29 -0.29 4.77 16 49 H 0.05 0.79 6.49 -51.93 -0.34 0.45 16 50 H 0.09 1.45 6.22 -51.93 -0.32 1.13 16 51 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 52 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 404.87 15.07 6.10 6.10 Total: -1.00 -32.43 404.87 -9.52 -41.95 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: -8.50 Total: 17.72 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -2.03 Total: 0.46 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.24 Total: -57.52 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: 0.17 Total: -24.76 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.43 -9.52 -41.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318516759.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.707 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds