Wall clock time and date at job start Tue Mar 31 2020 20:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47241 * 2 1 4 4 H 1.08994 * 109.46886 * 54.60613 * 3 2 1 5 5 C 1.52995 * 109.47130 * 174.60903 * 3 2 1 6 6 N 1.46506 * 109.46834 * 174.99845 * 5 3 2 7 7 C 1.34775 * 119.99821 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00210 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47214 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.63907 * 55.00155 * 10 9 7 12 12 C 1.53022 * 109.64499 * 294.58213 * 10 9 7 13 13 C 1.50167 * 110.09631 * 191.09134 * 12 10 9 14 14 C 1.29441 * 124.14515 * 16.72268 * 13 12 10 15 15 C 1.50066 * 124.07776 * 359.75353 * 14 13 12 16 16 C 1.53028 * 110.14547 * 17.13435 * 15 14 13 17 17 N 1.46901 * 109.46853 * 294.61081 * 3 2 1 18 18 C 1.46906 * 110.99674 * 300.92051 * 17 3 2 19 19 C 1.50702 * 109.46969 * 185.68018 * 18 17 3 20 20 O 1.21289 * 119.99926 * 359.97438 * 19 18 17 21 21 N 1.34771 * 119.99669 * 180.02562 * 19 18 17 22 22 C 1.37103 * 119.99875 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99503 * 359.97438 * 22 21 19 24 24 C 1.38944 * 120.00219 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00159 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 120.00195 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46997 * 59.99731 * 26 24 22 28 28 H 1.48495 * 109.47119 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47040 * 300.00259 * 26 24 22 30 30 H 1.09001 * 109.47071 * 178.86795 * 1 2 3 31 31 H 1.09001 * 109.47230 * 298.86251 * 1 2 3 32 32 H 1.08997 * 109.47227 * 58.86001 * 1 2 3 33 33 H 1.08999 * 109.47468 * 239.99684 * 2 1 3 34 34 H 1.09002 * 109.47248 * 119.99843 * 2 1 3 35 35 H 1.09005 * 109.47214 * 294.99805 * 5 3 2 36 36 H 1.08996 * 109.47677 * 55.00055 * 5 3 2 37 37 H 0.96995 * 119.99880 * 359.97438 * 6 5 3 38 38 H 1.08992 * 109.47000 * 300.00406 * 9 7 6 39 39 H 1.09004 * 109.46825 * 60.00248 * 9 7 6 40 40 H 1.08993 * 109.35973 * 311.08835 * 12 10 9 41 41 H 1.09004 * 109.35429 * 70.67048 * 12 10 9 42 42 H 1.07999 * 117.88776 * 196.91670 * 13 12 10 43 43 H 1.08005 * 117.96113 * 179.73646 * 14 13 12 44 44 H 1.08997 * 109.35815 * 256.92738 * 15 14 13 45 45 H 1.08997 * 109.24507 * 137.26796 * 15 14 13 46 46 H 1.09001 * 109.64215 * 190.87930 * 16 15 14 47 47 H 1.08995 * 109.64119 * 70.25004 * 16 15 14 48 48 H 1.00896 * 111.00131 * 64.86814 * 17 3 2 49 49 H 1.09002 * 109.47048 * 65.68091 * 18 17 3 50 50 H 1.09004 * 109.47096 * 305.67600 * 18 17 3 51 51 H 0.97000 * 120.00767 * 359.97438 * 21 19 18 52 52 H 0.96999 * 120.00152 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9835 0.8377 5 6 3.5639 1.4446 0.1355 6 7 4.0629 2.8169 0.0158 7 6 5.3850 3.0634 0.1046 8 8 6.1616 2.1491 0.2832 9 6 5.8983 4.4749 -0.0191 10 6 7.4223 4.4770 0.1165 11 1 7.8560 3.7930 -0.6130 12 6 7.8136 4.0382 1.5292 13 6 9.2752 4.2923 1.7622 14 6 10.0024 5.0741 1.0303 15 6 9.4878 5.8327 -0.1578 16 6 7.9592 5.8939 -0.1223 17 7 1.6594 2.0964 -1.2592 18 6 2.2178 1.3803 -2.4140 19 6 1.9258 2.1538 -3.6739 20 8 1.3124 3.1985 -3.6157 21 7 2.3453 1.6841 -4.8654 22 6 2.0792 2.3875 -6.0118 23 1 1.5330 3.3178 -5.9599 24 6 2.5121 1.9036 -7.2401 25 7 3.1772 0.7719 -7.3032 26 14 2.1489 2.8617 -8.8022 27 1 2.7647 4.2099 -8.7104 28 1 2.7131 2.1376 -9.9694 29 1 0.6796 2.9989 -8.9683 30 1 -0.3633 -1.0275 -0.0203 31 1 -0.3634 0.4961 0.9000 32 1 -0.3633 0.5314 -0.8796 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8428 1.0402 1.1086 36 1 3.9997 0.8297 -0.6519 37 1 3.4418 3.5480 -0.1274 38 1 5.6199 4.8786 -0.9925 39 1 5.4623 5.0903 0.7678 40 1 7.2310 4.6024 2.2573 41 1 7.6046 2.9750 1.6481 42 1 9.7497 3.7883 2.5911 43 1 11.0443 5.1876 1.2912 44 1 9.8083 5.3330 -1.0719 45 1 9.8905 6.8454 -0.1393 46 1 7.5854 6.2718 -1.0740 47 1 7.6374 6.5490 0.6872 48 1 0.6567 2.1787 -1.3352 49 1 1.7650 0.3911 -2.4817 50 1 3.2962 1.2787 -2.2917 51 1 2.8356 0.8484 -4.9121 52 1 3.4791 0.4339 -8.1608 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318555062.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:16 Heat of formation + Delta-G solvation = -82.455949 kcal Electronic energy + Delta-G solvation = -29593.239231 eV Core-core repulsion = 25591.731554 eV Total energy + Delta-G solvation = -4001.507676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.06061 -38.88179 -38.11203 -37.20876 -34.08204 -33.84590 -32.85731 -31.80379 -31.16989 -30.83101 -29.11619 -27.28263 -26.31306 -24.26628 -23.55737 -23.09863 -21.37158 -20.49896 -19.84716 -19.07082 -18.06139 -17.91117 -16.84133 -16.79678 -16.24095 -15.70892 -15.55007 -15.20849 -14.91185 -14.44990 -14.28714 -14.24951 -14.08634 -13.89346 -13.57578 -13.49503 -13.16683 -12.93936 -12.80150 -12.49437 -12.39876 -12.31466 -12.12141 -11.94446 -11.78894 -11.57650 -11.50408 -11.34662 -11.06401 -10.86499 -10.79020 -10.77185 -10.65799 -10.44845 -10.22901 -10.21547 -9.59921 -9.49946 -9.05683 -8.87595 -8.51605 -8.08762 -7.96229 -6.41511 -3.82650 2.21659 2.79392 3.19502 3.25471 3.28945 3.30718 3.90767 4.09256 4.32998 4.54417 4.59406 4.63288 4.71808 4.86092 4.96980 5.00951 5.08945 5.15966 5.21711 5.24658 5.25736 5.28137 5.38708 5.42348 5.50553 5.57243 5.58660 5.62014 5.65687 5.74835 5.76143 5.79104 5.81301 5.86399 5.87978 5.99383 6.05508 6.07188 6.18750 6.20236 6.26602 6.35742 6.57401 6.58873 6.88730 7.13527 7.54593 7.56129 7.70704 8.05753 8.39588 8.61068 9.17676 9.54461 10.05741 10.76123 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007989 B = 0.002961 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3503.803561 B = 9454.807199 C =12219.667250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.161 4.161 3 C 0.074 3.926 4 H 0.089 0.911 5 C 0.127 3.873 6 N -0.715 5.715 7 C 0.511 3.489 8 O -0.548 6.548 9 C -0.138 4.138 10 C -0.070 4.070 11 H 0.081 0.919 12 C -0.091 4.091 13 C -0.147 4.147 14 C -0.165 4.165 15 C -0.090 4.090 16 C -0.117 4.117 17 N -0.658 5.658 18 C 0.044 3.956 19 C 0.442 3.558 20 O -0.584 6.584 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.411 0.589 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.352 0.648 49 H 0.047 0.953 50 H 0.087 0.913 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.539 3.413 18.732 19.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.201 4.201 3 C -0.037 4.037 4 H 0.107 0.893 5 C 0.002 3.998 6 N -0.367 5.367 7 C 0.298 3.702 8 O -0.426 6.426 9 C -0.178 4.178 10 C -0.089 4.089 11 H 0.099 0.901 12 C -0.128 4.128 13 C -0.165 4.165 14 C -0.184 4.184 15 C -0.127 4.127 16 C -0.154 4.154 17 N -0.291 5.291 18 C -0.089 4.089 19 C 0.227 3.773 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.246 0.754 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.172 0.828 49 H 0.065 0.935 50 H 0.105 0.895 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.260 3.826 18.741 20.125 hybrid contribution -0.643 -0.705 -0.985 1.372 sum 5.617 3.121 17.755 18.882 Atomic orbital electron populations 1.21755 0.95291 1.01969 1.01999 1.22217 0.96750 0.98045 1.03049 1.21920 0.94452 0.93477 0.93886 0.89309 1.21371 0.92793 0.84081 1.01552 1.45866 1.07563 1.10025 1.73254 1.20678 0.82103 0.91448 0.75967 1.90650 1.55867 1.46730 1.49372 1.21760 0.97113 0.94321 1.04596 1.20943 0.92846 0.96927 0.98208 0.90076 1.20651 0.92982 1.03201 0.95961 1.22114 0.96395 0.98441 0.99568 1.22013 0.99304 0.99269 0.97770 1.20426 0.95570 0.99674 0.97006 1.21683 0.95192 0.96557 1.02008 1.60203 1.18013 1.51254 0.99605 1.21764 1.00952 0.95409 0.90749 1.19792 0.85308 0.87855 0.84310 1.90512 1.44995 1.24836 1.86464 1.41864 1.49893 1.23108 1.05159 1.19634 1.33842 1.06053 0.83424 0.88013 1.25259 0.96725 0.96456 0.99463 1.69604 1.37838 1.19889 1.26935 0.85932 0.78783 0.79308 0.80273 1.19871 1.20974 1.19938 0.92513 0.92578 0.92444 0.91051 0.91359 0.91493 0.91501 0.75360 0.88447 0.89078 0.91631 0.89075 0.88381 0.88401 0.90882 0.91278 0.91341 0.91768 0.82773 0.93514 0.89522 0.77534 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.71 37.16 0.36 -1.08 16 2 C -0.16 -1.58 5.17 -26.73 -0.14 -1.72 16 3 C 0.07 0.79 2.70 -67.71 -0.18 0.60 16 4 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 5 C 0.13 1.50 4.70 -4.04 -0.02 1.48 16 6 N -0.72 -8.71 5.39 -60.29 -0.32 -9.04 16 7 C 0.51 6.79 7.59 -10.98 -0.08 6.70 16 8 O -0.55 -8.95 14.06 5.56 0.08 -8.87 16 9 C -0.14 -1.45 5.18 -27.88 -0.14 -1.60 16 10 C -0.07 -0.77 1.87 -90.41 -0.17 -0.94 16 11 H 0.08 1.07 7.94 -51.93 -0.41 0.66 16 12 C -0.09 -0.99 5.06 -28.13 -0.14 -1.14 16 13 C -0.15 -1.51 9.80 -35.85 -0.35 -1.86 16 14 C -0.17 -1.60 9.80 -35.90 -0.35 -1.95 16 15 C -0.09 -0.82 6.12 -28.17 -0.17 -0.99 16 16 C -0.12 -1.08 5.31 -26.51 -0.14 -1.22 16 17 N -0.66 -9.27 5.36 -107.98 -0.58 -9.85 16 18 C 0.04 0.74 5.34 -4.97 -0.03 0.71 16 19 C 0.44 10.15 7.83 -10.99 -0.09 10.06 16 20 O -0.58 -15.28 15.90 5.55 0.09 -15.19 16 21 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 22 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 23 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 26 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.61 6.85 -51.93 -0.36 0.26 16 33 H 0.07 0.79 6.23 -51.93 -0.32 0.46 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.92 6.57 -51.93 -0.34 0.58 16 37 H 0.41 4.74 8.14 -40.82 -0.33 4.41 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.09 0.77 8.10 -51.93 -0.42 0.34 16 40 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 41 H 0.09 1.18 6.25 -51.93 -0.32 0.85 16 42 H 0.10 0.91 8.06 -52.49 -0.42 0.48 16 43 H 0.10 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 48 H 0.35 5.11 7.23 -39.29 -0.28 4.82 16 49 H 0.05 0.73 6.49 -51.93 -0.34 0.39 16 50 H 0.09 1.45 6.15 -51.93 -0.32 1.14 16 51 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 52 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 410.19 15.07 6.18 6.18 Total: -1.00 -31.74 410.19 -9.58 -41.31 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: -8.78 Total: 18.49 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.89 Total: -0.88 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.24 Total: -57.05 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: 0.17 Total: -24.07 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.74 -9.58 -41.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318555062.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.141 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds