Wall clock time and date at job start Tue Mar 31 2020 20:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46774 * 2 1 4 4 H 1.09006 * 109.46873 * 54.37160 * 3 2 1 5 5 C 1.52995 * 109.47163 * 294.37006 * 3 2 1 6 6 N 1.46506 * 109.47345 * 184.99704 * 5 3 2 7 7 C 1.34768 * 120.00064 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00455 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99810 * 180.02562 * 7 6 5 10 10 C 1.53004 * 109.47270 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.81278 * 305.52847 * 10 9 7 12 12 C 1.52975 * 109.79138 * 65.93951 * 10 9 7 13 13 C 1.50065 * 110.28679 * 168.91802 * 12 10 9 14 14 C 1.29433 * 124.07923 * 342.98466 * 13 12 10 15 15 C 1.50072 * 124.07445 * 0.48219 * 14 13 12 16 16 C 1.53022 * 110.14929 * 342.87411 * 15 14 13 17 17 N 1.46900 * 109.47075 * 174.36898 * 3 2 1 18 18 C 1.46894 * 110.99966 * 273.38810 * 17 3 2 19 19 C 1.50700 * 109.46979 * 174.77897 * 18 17 3 20 20 O 1.21295 * 120.00190 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00040 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99911 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00020 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99835 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00035 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99967 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47294 * 89.99626 * 26 24 22 28 28 H 1.48500 * 109.46855 * 209.99771 * 26 24 22 29 29 H 1.48500 * 109.46865 * 329.99545 * 26 24 22 30 30 H 1.09004 * 109.46579 * 185.81417 * 1 2 3 31 31 H 1.09007 * 109.46981 * 305.80765 * 1 2 3 32 32 H 1.08992 * 109.47190 * 65.80532 * 1 2 3 33 33 H 1.08994 * 109.47144 * 240.00700 * 2 1 3 34 34 H 1.08992 * 109.47270 * 119.99692 * 2 1 3 35 35 H 1.09003 * 109.47034 * 65.00215 * 5 3 2 36 36 H 1.09002 * 109.47361 * 305.00237 * 5 3 2 37 37 H 0.96999 * 119.99139 * 0.02562 * 6 5 3 38 38 H 1.09003 * 109.47009 * 60.00311 * 9 7 6 39 39 H 1.08999 * 109.47663 * 300.00196 * 9 7 6 40 40 H 1.09008 * 109.17880 * 48.73967 * 12 10 9 41 41 H 1.09000 * 109.28064 * 289.17098 * 12 10 9 42 42 H 1.08001 * 117.95602 * 163.00032 * 13 12 10 43 43 H 1.08003 * 117.96871 * 180.51333 * 14 13 12 44 44 H 1.08998 * 109.35880 * 222.66029 * 15 14 13 45 45 H 1.09006 * 109.24142 * 103.01111 * 15 14 13 46 46 H 1.08995 * 109.64258 * 169.11844 * 16 15 14 47 47 H 1.08993 * 109.64412 * 289.54017 * 16 15 14 48 48 H 1.00895 * 110.99713 * 149.43056 * 17 3 2 49 49 H 1.08996 * 109.47628 * 294.78023 * 18 17 3 50 50 H 1.08999 * 109.47103 * 54.78403 * 18 17 3 51 51 H 0.96993 * 119.99994 * 0.02562 * 21 19 18 52 52 H 0.97005 * 119.99704 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5966 1.9847 0.8354 5 6 1.6488 2.1218 -1.3139 6 7 2.2380 3.4622 -1.3652 7 6 2.0270 4.2505 -2.4377 8 8 1.3489 3.8506 -3.3603 9 6 2.6336 5.6289 -2.4907 10 6 2.2423 6.3083 -3.8046 11 1 2.5210 5.6737 -4.6459 12 6 0.7329 6.5554 -3.8304 13 6 0.3722 7.4534 -4.9774 14 6 1.2232 8.1884 -5.6184 15 6 2.6913 8.2376 -5.3109 16 6 2.9579 7.6603 -3.9191 17 7 3.5027 1.4449 0.1359 18 6 3.9001 1.4095 1.5496 19 6 5.3986 1.2836 1.6471 20 8 6.0697 1.2293 0.6382 21 7 5.9934 1.2325 2.8555 22 6 7.3567 1.1185 2.9442 23 1 7.9541 1.0692 2.0458 24 6 7.9698 1.0652 4.1900 25 7 7.2430 1.1246 5.2831 26 14 9.8275 0.9092 4.3109 27 1 10.4368 2.2630 4.3449 28 1 10.1827 0.1751 5.5519 29 1 10.3394 0.1653 3.1320 30 1 -0.3632 -1.0224 0.1041 31 1 -0.3633 0.6013 0.8335 32 1 -0.3633 0.4211 -0.9373 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5137 0.8899 35 1 0.5632 2.1997 -1.3735 36 1 2.0172 1.5306 -2.1523 37 1 2.7807 3.7818 -0.6275 38 1 3.7192 5.5507 -2.4309 39 1 2.2653 6.2205 -1.6525 40 1 0.4309 7.0258 -2.8946 41 1 0.2140 5.6031 -3.9400 42 1 -0.6618 7.4887 -5.2871 43 1 0.8538 8.8051 -6.4245 44 1 3.0330 9.2720 -5.3446 45 1 3.2338 7.6535 -6.0544 46 1 4.0298 7.5205 -3.7796 47 1 2.5756 8.3426 -3.1600 48 1 3.9082 2.2404 -0.3339 49 1 3.5800 2.3287 2.0402 50 1 3.4312 0.5550 2.0375 51 1 5.4569 1.2763 3.6624 52 1 7.6711 1.0878 6.1528 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318555063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:19 Heat of formation + Delta-G solvation = -82.778747 kcal Electronic energy + Delta-G solvation = -28954.388181 eV Core-core repulsion = 24952.866507 eV Total energy + Delta-G solvation = -4001.521674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.28337 -38.80593 -38.23840 -37.19213 -34.15454 -33.88195 -33.02697 -32.63111 -31.22994 -30.96705 -29.01405 -27.37508 -25.87361 -24.20016 -23.64499 -23.36998 -21.64459 -20.57850 -20.09048 -19.31599 -18.21610 -17.94431 -17.22267 -16.62002 -16.14155 -15.97686 -15.60289 -15.33135 -15.07426 -14.58673 -14.51410 -14.33382 -13.95874 -13.88805 -13.60531 -13.45471 -13.40732 -13.03658 -12.93187 -12.56232 -12.50071 -12.42992 -12.26597 -11.93239 -11.76280 -11.70177 -11.56334 -11.37782 -11.18704 -11.06406 -10.93553 -10.81792 -10.60564 -10.41633 -10.37475 -10.24462 -9.82274 -9.53748 -9.23192 -9.12566 -8.52317 -8.12771 -7.99250 -6.44675 -3.85494 2.09961 2.53881 3.01789 3.15561 3.24619 3.30609 3.86867 3.99586 4.24043 4.37603 4.42645 4.52540 4.61641 4.80397 4.87588 4.92155 5.04999 5.09842 5.12749 5.16810 5.21992 5.22655 5.27689 5.35216 5.41287 5.43734 5.47577 5.52415 5.58628 5.64336 5.67762 5.71127 5.73701 5.83548 5.86027 5.92849 6.00370 6.04152 6.13246 6.17735 6.19482 6.26722 6.37591 6.45596 6.76563 7.11684 7.31057 7.52453 7.53449 8.03200 8.09754 8.58195 9.15136 9.51089 10.02596 10.72952 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011006 B = 0.002187 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.550320 B =12799.658543 C =14917.447962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C 0.076 3.924 4 H 0.049 0.951 5 C 0.117 3.883 6 N -0.734 5.734 7 C 0.515 3.485 8 O -0.538 6.538 9 C -0.140 4.140 10 C -0.070 4.070 11 H 0.081 0.919 12 C -0.092 4.092 13 C -0.147 4.147 14 C -0.166 4.166 15 C -0.089 4.089 16 C -0.117 4.117 17 N -0.664 5.664 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.581 6.581 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.399 0.601 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.347 0.653 49 H 0.043 0.957 50 H 0.088 0.912 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.524 10.959 -12.543 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.034 4.034 4 H 0.067 0.933 5 C -0.006 4.006 6 N -0.387 5.387 7 C 0.302 3.698 8 O -0.415 6.415 9 C -0.180 4.180 10 C -0.089 4.089 11 H 0.100 0.900 12 C -0.129 4.129 13 C -0.165 4.165 14 C -0.184 4.184 15 C -0.126 4.126 16 C -0.155 4.155 17 N -0.298 5.298 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.465 6.465 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.233 0.767 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.168 0.832 49 H 0.061 0.939 50 H 0.106 0.894 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.437 9.946 -13.778 22.957 hybrid contribution 0.600 0.975 1.430 1.832 sum -14.838 10.921 -12.348 22.179 Atomic orbital electron populations 1.21844 0.95910 1.01820 1.01669 1.21486 0.94657 0.95261 1.03550 1.21854 0.88964 0.96857 0.95734 0.93286 1.21636 0.98414 0.82253 0.98343 1.46129 1.54163 1.16740 1.21632 1.20678 0.80412 0.87051 0.81632 1.90669 1.39292 1.75065 1.36486 1.21800 1.02630 0.93226 1.00333 1.20934 0.95521 0.95841 0.96605 0.90036 1.20624 0.95866 0.99824 0.96578 1.22080 0.99089 0.97491 0.97821 1.22019 0.95509 1.00290 1.00548 1.20421 0.93953 1.01093 0.97168 1.21682 1.00379 0.96292 0.97136 1.60012 1.06523 1.50199 1.13071 1.21749 0.96143 1.01104 0.89302 1.19791 0.88494 0.84697 0.84491 1.90534 1.65179 1.55301 1.35466 1.41867 1.07933 1.64014 1.06239 1.19697 0.82029 1.47144 0.93996 0.87926 1.25264 1.00568 0.97341 0.94790 1.69609 1.36275 1.50496 0.97913 0.85860 0.82229 0.78401 0.77820 1.20418 1.20921 1.19394 0.92493 0.92861 0.92642 0.90908 0.91175 0.90740 0.90436 0.76658 0.88371 0.88839 0.91514 0.89190 0.88266 0.88322 0.91168 0.90933 0.91387 0.91688 0.83247 0.93886 0.89430 0.77501 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.54 37.16 0.35 -1.01 16 2 C -0.11 -1.22 5.65 -26.72 -0.15 -1.37 16 3 C 0.08 0.87 2.26 -67.71 -0.15 0.71 16 4 H 0.05 0.52 7.83 -51.93 -0.41 0.11 16 5 C 0.12 1.30 4.95 -4.04 -0.02 1.28 16 6 N -0.73 -7.62 4.98 -60.29 -0.30 -7.92 16 7 C 0.52 5.80 7.59 -10.99 -0.08 5.72 16 8 O -0.54 -7.75 14.09 5.56 0.08 -7.68 16 9 C -0.14 -1.18 5.18 -27.88 -0.14 -1.32 16 10 C -0.07 -0.64 1.87 -90.43 -0.17 -0.80 16 11 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 12 C -0.09 -0.87 5.06 -28.20 -0.14 -1.01 16 13 C -0.15 -1.32 9.81 -35.90 -0.35 -1.67 16 14 C -0.17 -1.38 9.80 -35.90 -0.35 -1.73 16 15 C -0.09 -0.67 6.12 -28.18 -0.17 -0.85 16 16 C -0.12 -0.89 5.30 -26.51 -0.14 -1.03 16 17 N -0.66 -9.94 5.84 -107.99 -0.63 -10.57 16 18 C 0.05 0.82 5.93 -4.98 -0.03 0.79 16 19 C 0.44 10.04 7.83 -10.98 -0.09 9.95 16 20 O -0.58 -15.44 15.89 5.54 0.09 -15.35 16 21 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 22 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 23 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.13 13.05 55.50 0.72 -23.40 16 26 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.05 0.47 6.99 -51.93 -0.36 0.11 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.83 7.41 -51.93 -0.38 0.45 16 35 H 0.07 0.79 6.97 -51.93 -0.36 0.42 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.40 3.65 7.40 -40.82 -0.30 3.35 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.63 8.09 -51.93 -0.42 0.21 16 40 H 0.07 0.58 8.06 -51.92 -0.42 0.16 16 41 H 0.09 1.03 6.30 -51.93 -0.33 0.70 16 42 H 0.10 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.10 0.71 8.06 -52.48 -0.42 0.29 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 48 H 0.35 5.24 6.61 -39.29 -0.26 4.98 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.09 1.35 7.38 -51.93 -0.38 0.97 16 51 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 52 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 413.96 15.07 6.24 6.24 Total: -1.00 -32.12 413.96 -9.71 -41.83 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -8.95 Total: 15.29 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.88 Total: -0.22 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.26 Total: -55.87 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.17 Total: -23.03 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.12 -9.71 -41.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318555063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.946 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds