Wall clock time and date at job start Tue Mar 31 2020 20:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46774 * 2 1 4 4 H 1.09006 * 109.46873 * 54.37160 * 3 2 1 5 5 C 1.52995 * 109.47163 * 294.37006 * 3 2 1 6 6 N 1.46506 * 109.47345 * 184.99704 * 5 3 2 7 7 C 1.34768 * 120.00064 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00455 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99810 * 180.02562 * 7 6 5 10 10 C 1.53004 * 109.47270 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.81278 * 305.52847 * 10 9 7 12 12 C 1.52975 * 109.79138 * 65.93951 * 10 9 7 13 13 C 1.50065 * 110.28679 * 168.91802 * 12 10 9 14 14 C 1.29433 * 124.07923 * 342.98466 * 13 12 10 15 15 C 1.50072 * 124.07445 * 0.48219 * 14 13 12 16 16 C 1.53022 * 110.14929 * 342.87411 * 15 14 13 17 17 N 1.46900 * 109.47075 * 174.36898 * 3 2 1 18 18 C 1.46894 * 110.99966 * 273.38810 * 17 3 2 19 19 C 1.50700 * 109.46979 * 174.77897 * 18 17 3 20 20 O 1.21295 * 120.00190 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00040 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99911 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00020 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99835 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00035 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99967 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47294 * 89.99626 * 26 24 22 28 28 H 1.48500 * 109.46855 * 209.99771 * 26 24 22 29 29 H 1.48500 * 109.46865 * 329.99545 * 26 24 22 30 30 H 1.09004 * 109.46579 * 185.81417 * 1 2 3 31 31 H 1.09007 * 109.46981 * 305.80765 * 1 2 3 32 32 H 1.08992 * 109.47190 * 65.80532 * 1 2 3 33 33 H 1.08994 * 109.47144 * 240.00700 * 2 1 3 34 34 H 1.08992 * 109.47270 * 119.99692 * 2 1 3 35 35 H 1.09003 * 109.47034 * 65.00215 * 5 3 2 36 36 H 1.09002 * 109.47361 * 305.00237 * 5 3 2 37 37 H 0.96999 * 119.99139 * 0.02562 * 6 5 3 38 38 H 1.09003 * 109.47009 * 60.00311 * 9 7 6 39 39 H 1.08999 * 109.47663 * 300.00196 * 9 7 6 40 40 H 1.09008 * 109.17880 * 48.73967 * 12 10 9 41 41 H 1.09000 * 109.28064 * 289.17098 * 12 10 9 42 42 H 1.08001 * 117.95602 * 163.00032 * 13 12 10 43 43 H 1.08003 * 117.96871 * 180.51333 * 14 13 12 44 44 H 1.08998 * 109.35880 * 222.66029 * 15 14 13 45 45 H 1.09006 * 109.24142 * 103.01111 * 15 14 13 46 46 H 1.08995 * 109.64258 * 169.11844 * 16 15 14 47 47 H 1.08993 * 109.64412 * 289.54017 * 16 15 14 48 48 H 1.00895 * 110.99713 * 149.43056 * 17 3 2 49 49 H 1.08996 * 109.47628 * 294.78023 * 18 17 3 50 50 H 1.08999 * 109.47103 * 54.78403 * 18 17 3 51 51 H 0.96993 * 119.99994 * 0.02562 * 21 19 18 52 52 H 0.97005 * 119.99704 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5966 1.9847 0.8354 5 6 1.6488 2.1218 -1.3139 6 7 2.2380 3.4622 -1.3652 7 6 2.0270 4.2505 -2.4377 8 8 1.3489 3.8506 -3.3603 9 6 2.6336 5.6289 -2.4907 10 6 2.2423 6.3083 -3.8046 11 1 2.5210 5.6737 -4.6459 12 6 0.7329 6.5554 -3.8304 13 6 0.3722 7.4534 -4.9774 14 6 1.2232 8.1884 -5.6184 15 6 2.6913 8.2376 -5.3109 16 6 2.9579 7.6603 -3.9191 17 7 3.5027 1.4449 0.1359 18 6 3.9001 1.4095 1.5496 19 6 5.3986 1.2836 1.6471 20 8 6.0697 1.2293 0.6382 21 7 5.9934 1.2325 2.8555 22 6 7.3567 1.1185 2.9442 23 1 7.9541 1.0692 2.0458 24 6 7.9698 1.0652 4.1900 25 7 7.2430 1.1246 5.2831 26 14 9.8275 0.9092 4.3109 27 1 10.4368 2.2630 4.3449 28 1 10.1827 0.1751 5.5519 29 1 10.3394 0.1653 3.1320 30 1 -0.3632 -1.0224 0.1041 31 1 -0.3633 0.6013 0.8335 32 1 -0.3633 0.4211 -0.9373 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5137 0.8899 35 1 0.5632 2.1997 -1.3735 36 1 2.0172 1.5306 -2.1523 37 1 2.7807 3.7818 -0.6275 38 1 3.7192 5.5507 -2.4309 39 1 2.2653 6.2205 -1.6525 40 1 0.4309 7.0258 -2.8946 41 1 0.2140 5.6031 -3.9400 42 1 -0.6618 7.4887 -5.2871 43 1 0.8538 8.8051 -6.4245 44 1 3.0330 9.2720 -5.3446 45 1 3.2338 7.6535 -6.0544 46 1 4.0298 7.5205 -3.7796 47 1 2.5756 8.3426 -3.1600 48 1 3.9082 2.2404 -0.3339 49 1 3.5800 2.3287 2.0402 50 1 3.4312 0.5550 2.0375 51 1 5.4569 1.2763 3.6624 52 1 7.6711 1.0878 6.1528 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318555063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:18 Heat of formation + Delta-G solvation = -104.456715 kcal Electronic energy + Delta-G solvation = -28955.328208 eV Core-core repulsion = 24952.866507 eV Total energy + Delta-G solvation = -4002.461701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.16031 -40.20796 -39.28846 -38.32557 -35.97226 -34.98826 -33.84808 -33.64671 -33.19048 -31.60302 -29.96302 -28.43888 -27.23593 -25.61713 -24.69528 -24.03425 -22.37882 -21.49478 -21.14214 -20.89579 -19.90368 -18.89466 -18.25423 -17.69355 -17.28830 -16.78891 -16.74299 -16.64448 -16.37472 -16.06121 -15.60967 -15.47283 -15.14644 -14.97897 -14.64059 -14.49521 -14.29250 -14.03122 -13.77520 -13.69850 -13.52270 -13.38965 -13.21629 -13.16800 -12.94706 -12.86623 -12.66016 -12.46945 -12.41065 -12.37154 -12.12103 -12.03675 -11.64168 -11.51580 -11.50928 -11.47901 -11.01843 -10.69886 -10.32695 -10.11487 -9.99682 -9.82234 -9.34932 -8.45543 -5.93747 1.38572 1.42820 1.43593 1.55050 1.66255 2.07152 2.17891 2.29789 2.85893 3.22000 3.48361 3.64977 3.70836 3.76599 3.85495 4.09367 4.12034 4.21542 4.27650 4.31219 4.41329 4.42409 4.47428 4.49556 4.57630 4.58851 4.61131 4.70022 4.73922 4.78240 4.80530 4.83658 4.93223 4.98652 5.05284 5.10342 5.23175 5.23303 5.29635 5.36853 5.38696 5.42458 5.49534 5.51908 5.80644 5.88980 6.09905 6.10190 6.37214 6.47667 6.61969 7.14593 7.23860 7.58543 8.14187 8.71613 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011006 B = 0.002187 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.550320 B =12799.658543 C =14917.447962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C 0.085 3.915 4 H 0.070 0.930 5 C 0.124 3.876 6 N -0.728 5.728 7 C 0.511 3.489 8 O -0.574 6.574 9 C -0.135 4.135 10 C -0.069 4.069 11 H 0.056 0.944 12 C -0.089 4.089 13 C -0.165 4.165 14 C -0.164 4.164 15 C -0.094 4.094 16 C -0.114 4.114 17 N -0.681 5.681 18 C 0.065 3.935 19 C 0.438 3.562 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.332 4.332 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.270 1.270 28 H -0.272 1.272 29 H -0.275 1.275 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.407 0.593 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.344 0.656 49 H 0.074 0.926 50 H 0.103 0.897 51 H 0.397 0.603 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.939 12.188 -11.582 23.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.025 4.025 4 H 0.088 0.912 5 C 0.000 4.000 6 N -0.381 5.381 7 C 0.299 3.701 8 O -0.454 6.454 9 C -0.174 4.174 10 C -0.088 4.088 11 H 0.075 0.925 12 C -0.126 4.126 13 C -0.183 4.183 14 C -0.182 4.182 15 C -0.130 4.130 16 C -0.151 4.151 17 N -0.315 5.315 18 C -0.067 4.067 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.461 4.461 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.195 1.195 28 H -0.197 1.197 29 H -0.200 1.200 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.243 0.757 38 H 0.128 0.872 39 H 0.135 0.865 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.128 0.872 44 H 0.104 0.896 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.165 0.835 49 H 0.092 0.908 50 H 0.121 0.879 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.873 11.179 -12.786 23.247 hybrid contribution 0.688 0.572 1.063 1.389 sum -15.185 11.751 -11.723 22.497 Atomic orbital electron populations 1.21791 0.94013 1.02536 1.02266 1.21484 0.96275 0.94716 1.02492 1.21866 0.86737 0.97412 0.96442 0.91240 1.21516 0.98805 0.82333 0.97373 1.46097 1.53908 1.16340 1.21751 1.21206 0.79815 0.87968 0.81068 1.90660 1.41000 1.75964 1.37778 1.21838 1.03136 0.91593 1.00857 1.20884 0.95451 0.96380 0.96043 0.92502 1.20546 0.95946 0.98770 0.97296 1.22169 0.99651 0.98132 0.98330 1.22241 0.95913 0.99777 1.00307 1.20497 0.93412 1.01999 0.97127 1.21670 1.00713 0.95299 0.97429 1.59977 1.08842 1.50565 1.12156 1.21596 0.91098 1.03256 0.90779 1.20901 0.91120 0.82267 0.83164 1.90505 1.67080 1.56585 1.36725 1.41926 1.07252 1.64731 1.07144 1.19633 0.83481 1.49344 0.93676 0.90433 1.26002 1.04648 0.96462 0.94150 1.69664 1.37773 1.50322 0.98256 0.84962 0.77183 0.78636 0.77773 1.19517 1.19687 1.19980 0.91886 0.91813 0.92353 0.92313 0.91922 0.89860 0.92544 0.75700 0.87186 0.86467 0.90642 0.91636 0.87911 0.87226 0.89641 0.91085 0.90503 0.90863 0.83502 0.90782 0.87861 0.76950 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.54 71.98 0.69 -1.65 16 2 C -0.11 -2.30 5.65 30.60 0.17 -2.13 16 3 C 0.08 1.79 2.26 44.92 0.10 1.89 16 4 H 0.07 1.24 7.83 -2.38 -0.02 1.22 16 5 C 0.12 2.63 4.95 86.38 0.43 3.06 16 6 N -0.73 -14.34 4.98 -463.07 -2.30 -16.64 16 7 C 0.51 11.26 7.59 87.66 0.67 11.93 16 8 O -0.57 -16.90 14.09 -3.03 -0.04 -16.95 16 9 C -0.13 -2.10 5.18 29.85 0.15 -1.94 16 10 C -0.07 -1.20 1.87 -10.67 -0.02 -1.22 16 11 H 0.06 1.27 7.93 -2.39 -0.02 1.26 16 12 C -0.09 -1.66 5.06 29.64 0.15 -1.51 16 13 C -0.16 -2.90 9.81 27.05 0.27 -2.64 16 14 C -0.16 -2.57 9.80 27.05 0.27 -2.30 16 15 C -0.09 -1.28 6.12 29.66 0.18 -1.09 16 16 C -0.11 -1.54 5.30 30.73 0.16 -1.38 16 17 N -0.68 -19.60 5.84 -495.58 -2.89 -22.49 16 18 C 0.06 2.03 5.93 85.56 0.51 2.53 16 19 C 0.44 19.95 7.83 87.66 0.69 20.63 16 20 O -0.62 -33.64 15.89 -3.08 -0.05 -33.69 16 21 N -0.57 -28.40 5.29 -306.98 -1.62 -30.03 16 22 C -0.33 -18.46 9.68 84.04 0.81 -17.64 16 23 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 24 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 25 N -0.92 -48.55 13.05 21.66 0.28 -48.27 16 26 Si 0.99 42.28 29.55 68.60 2.03 44.31 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 29 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.06 0.89 6.99 -2.39 -0.02 0.87 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.40 7.41 -2.39 -0.02 1.38 16 35 H 0.08 1.65 6.97 -2.39 -0.02 1.64 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.41 6.73 7.40 -92.71 -0.69 6.05 16 38 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.12 1.29 8.09 -2.39 -0.02 1.27 16 40 H 0.08 1.23 8.06 -2.38 -0.02 1.21 16 41 H 0.07 1.56 6.30 -2.39 -0.02 1.54 16 42 H 0.10 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.11 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 48 H 0.34 10.10 6.61 -89.70 -0.59 9.51 16 49 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.10 2.95 7.38 -2.39 -0.02 2.93 16 51 H 0.40 18.56 7.90 -92.71 -0.73 17.83 16 52 H 0.28 13.73 8.31 -92.70 -0.77 12.96 16 Total: -1.00 -70.48 413.96 0.01 -70.48 By element: Atomic # 1 Polarization: 48.04 SS G_CDS: -1.08 Total: 46.95 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 5.69 Total: 6.32 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -6.54 Total: -117.42 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -0.09 Total: -50.64 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -70.48 0.01 -70.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318555063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.978 kcal (2) G-P(sol) polarization free energy of solvation -70.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds