Wall clock time and date at job start Tue Mar 31 2020 20:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47160 * 2 1 4 4 H 1.09002 * 109.47331 * 302.96215 * 3 2 1 5 5 C 1.53005 * 109.47065 * 182.96741 * 3 2 1 6 6 N 1.46508 * 109.46900 * 185.00081 * 5 3 2 7 7 C 1.34776 * 119.99626 * 179.72441 * 6 5 3 8 8 O 1.21279 * 119.99926 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99695 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.46963 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.63699 * 55.00262 * 10 9 7 12 12 C 1.53019 * 109.64015 * 294.57694 * 10 9 7 13 13 C 1.50168 * 110.09465 * 191.09306 * 12 10 9 14 14 C 1.29441 * 124.14314 * 16.72164 * 13 12 10 15 15 C 1.50070 * 124.08200 * 359.75817 * 14 13 12 16 16 C 1.53034 * 110.14134 * 17.12876 * 15 14 13 17 17 N 1.46898 * 109.47596 * 62.96356 * 3 2 1 18 18 C 1.46900 * 110.99740 * 65.52215 * 17 3 2 19 19 C 1.50706 * 109.47229 * 182.18751 * 18 17 3 20 20 O 1.21295 * 119.99585 * 359.97438 * 19 18 17 21 21 N 1.34773 * 120.00204 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00093 * 179.97438 * 21 19 18 23 23 H 1.08006 * 119.99745 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00280 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99695 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46906 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47267 * 119.99813 * 26 24 22 29 29 H 1.48499 * 109.46968 * 239.99346 * 26 24 22 30 30 H 1.09003 * 109.47072 * 294.77740 * 1 2 3 31 31 H 1.08992 * 109.47334 * 54.77779 * 1 2 3 32 32 H 1.08994 * 109.47041 * 174.78179 * 1 2 3 33 33 H 1.08999 * 109.47549 * 239.99660 * 2 1 3 34 34 H 1.09006 * 109.46901 * 119.99472 * 2 1 3 35 35 H 1.08997 * 109.47535 * 64.99894 * 5 3 2 36 36 H 1.08996 * 109.46891 * 304.99150 * 5 3 2 37 37 H 0.97000 * 119.99750 * 359.97438 * 6 5 3 38 38 H 1.09002 * 109.46902 * 299.99836 * 9 7 6 39 39 H 1.08999 * 109.47618 * 60.00095 * 9 7 6 40 40 H 1.08993 * 109.36030 * 311.08655 * 12 10 9 41 41 H 1.08999 * 109.35476 * 70.67753 * 12 10 9 42 42 H 1.07997 * 117.89478 * 196.92083 * 13 12 10 43 43 H 1.08008 * 117.96027 * 179.73322 * 14 13 12 44 44 H 1.09002 * 109.35636 * 256.92726 * 15 14 13 45 45 H 1.08991 * 109.24946 * 137.26246 * 15 14 13 46 46 H 1.09003 * 109.63689 * 190.88262 * 16 15 14 47 47 H 1.08999 * 109.64200 * 70.25308 * 16 15 14 48 48 H 1.00893 * 111.00369 * 189.47528 * 17 3 2 49 49 H 1.08996 * 109.47610 * 302.18574 * 18 17 3 50 50 H 1.08994 * 109.47244 * 62.18710 * 18 17 3 51 51 H 0.96997 * 119.99900 * 0.02562 * 21 19 18 52 52 H 0.97001 * 119.99726 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6340 1.9714 -0.8622 5 6 3.5682 1.4431 -0.0747 6 7 4.0624 2.8170 0.0455 7 6 5.3873 3.0619 0.0121 8 8 6.1704 2.1448 -0.1170 9 6 5.8957 4.4752 0.1351 10 6 7.4243 4.4750 0.0680 11 1 7.7509 3.9752 -0.8439 12 6 7.9924 3.7448 1.2868 13 6 9.4747 3.9680 1.3774 14 6 10.1083 4.9039 0.7464 15 6 9.4510 5.8948 -0.1691 16 6 7.9409 5.9193 0.0778 17 7 1.6097 2.1141 1.2336 18 6 2.2440 1.5077 2.4117 19 6 1.7387 2.1859 3.6591 20 8 0.9302 3.0861 3.5749 21 7 2.1860 1.7928 4.8682 22 6 1.7268 2.4101 6.0029 23 1 1.0068 3.2117 5.9279 24 6 2.1883 2.0053 7.2494 25 7 3.0647 1.0303 7.3406 26 14 1.5620 2.8459 8.7955 27 1 0.5885 3.9039 8.4239 28 1 0.8971 1.8452 9.6684 29 1 2.7030 3.4571 9.5234 30 1 -0.3633 0.4307 0.9331 31 1 -0.3633 0.5927 -0.8394 32 1 -0.3633 -1.0233 -0.0935 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8855 1.0251 -1.0300 36 1 3.9719 0.8395 0.7382 37 1 3.4362 3.5500 0.1527 38 1 5.4959 5.0774 -0.6808 39 1 5.5742 4.8954 1.0881 40 1 7.5166 4.1256 2.1904 41 1 7.7891 2.6778 1.1959 42 1 10.0482 3.3035 2.0065 43 1 11.1766 4.9764 0.8878 44 1 9.6433 5.6131 -1.2044 45 1 9.8638 6.8860 0.0183 46 1 7.4499 6.4894 -0.7109 47 1 7.7353 6.3755 1.0461 48 1 1.7983 3.1043 1.1909 49 1 1.9989 0.4464 2.4506 50 1 3.3251 1.6287 2.3450 51 1 2.8334 1.0737 4.9355 52 1 3.3872 0.7479 8.2108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318555064.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:22 Heat of formation + Delta-G solvation = -80.744317 kcal Electronic energy + Delta-G solvation = -29762.127167 eV Core-core repulsion = 25760.693713 eV Total energy + Delta-G solvation = -4001.433454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.27082 -38.91534 -38.15897 -37.19612 -34.09173 -33.86909 -32.94050 -31.97802 -31.19531 -30.87289 -29.04991 -27.33908 -26.28503 -24.27593 -23.57254 -23.10936 -21.47002 -20.54590 -20.00194 -19.07764 -18.11604 -17.92200 -17.19143 -16.78428 -16.32199 -15.80336 -15.59697 -15.35920 -14.67273 -14.56661 -14.29916 -14.27277 -14.12993 -13.72699 -13.60474 -13.45882 -13.22320 -13.06792 -12.75690 -12.61359 -12.48718 -12.19755 -12.17180 -11.92452 -11.78816 -11.61531 -11.46543 -11.28400 -11.05783 -10.89072 -10.84751 -10.73874 -10.58636 -10.35343 -10.28209 -10.23133 -9.76233 -9.52745 -9.18442 -9.02560 -8.50847 -8.10446 -7.96962 -6.42361 -3.83366 2.21998 2.59275 3.05343 3.15495 3.26223 3.33103 3.89585 4.07977 4.30920 4.45166 4.50254 4.59845 4.65221 4.83794 4.89555 4.98167 5.10996 5.13535 5.18806 5.22396 5.25502 5.32176 5.35946 5.42773 5.49053 5.51592 5.58017 5.60394 5.66196 5.68963 5.76252 5.80123 5.83910 5.90966 5.98715 6.03973 6.07505 6.14673 6.21820 6.27159 6.29877 6.33829 6.53884 6.56612 6.88954 7.12608 7.36114 7.54013 7.54466 8.05336 8.15633 8.60045 9.17082 9.53567 10.04616 10.75318 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007401 B = 0.003231 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3782.219560 B = 8662.772064 C =11585.383427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.077 3.923 4 H 0.088 0.912 5 C 0.080 3.920 6 N -0.731 5.731 7 C 0.514 3.486 8 O -0.537 6.537 9 C -0.140 4.140 10 C -0.068 4.068 11 H 0.079 0.921 12 C -0.096 4.096 13 C -0.141 4.141 14 C -0.171 4.171 15 C -0.087 4.087 16 C -0.117 4.117 17 N -0.652 5.652 18 C 0.044 3.956 19 C 0.441 3.559 20 O -0.584 6.584 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.900 5.900 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.398 0.602 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.344 0.656 49 H 0.088 0.912 50 H 0.047 0.953 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.274 4.318 -17.700 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.034 4.034 4 H 0.106 0.894 5 C -0.046 4.046 6 N -0.384 5.384 7 C 0.301 3.699 8 O -0.414 6.414 9 C -0.180 4.180 10 C -0.087 4.087 11 H 0.097 0.903 12 C -0.132 4.132 13 C -0.160 4.160 14 C -0.189 4.189 15 C -0.124 4.124 16 C -0.155 4.155 17 N -0.284 5.284 18 C -0.089 4.089 19 C 0.227 3.773 20 O -0.469 6.469 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.233 0.767 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.164 0.836 49 H 0.106 0.894 50 H 0.065 0.935 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.793 3.808 -17.606 19.626 hybrid contribution 0.881 0.481 0.978 1.402 sum 8.675 4.288 -16.628 19.239 Atomic orbital electron populations 1.21615 0.94615 1.00567 1.03084 1.21503 0.97345 0.94350 1.01965 1.21978 0.90436 0.97172 0.93858 0.89399 1.22176 0.96417 0.83381 1.02588 1.46036 1.07497 1.09680 1.75184 1.20702 0.81900 0.91643 0.75642 1.90672 1.55321 1.46615 1.48788 1.21803 0.97491 0.94029 1.04645 1.20931 0.92018 0.95875 0.99906 0.90282 1.20684 0.92490 1.02645 0.97404 1.22138 0.96558 0.97858 0.99400 1.21980 0.99383 0.97642 0.99910 1.20401 0.94952 0.98253 0.98823 1.21690 0.95443 0.96173 1.02159 1.60212 1.60874 1.07387 0.99940 1.21771 0.96587 1.00009 0.90491 1.19800 0.86156 0.87064 0.84320 1.90519 1.36787 1.33023 1.86523 1.41873 1.39715 1.33738 1.04661 1.19735 1.23428 1.16571 0.83118 0.87899 1.25264 0.96575 0.96722 0.99378 1.69624 1.30738 1.27993 1.25815 0.85816 0.78598 0.79092 0.80940 1.19213 1.20732 1.20775 0.91023 0.93211 0.93550 0.91847 0.91487 0.91303 0.90916 0.76679 0.88827 0.88520 0.91109 0.89019 0.88156 0.88329 0.91153 0.91268 0.91624 0.91488 0.83592 0.89369 0.93523 0.77525 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.71 37.16 0.36 -1.23 16 2 C -0.11 -1.21 5.29 -26.73 -0.14 -1.35 16 3 C 0.08 0.83 2.73 -67.71 -0.18 0.64 16 4 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 5 C 0.08 0.90 4.47 -4.03 -0.02 0.88 16 6 N -0.73 -7.84 5.31 -60.29 -0.32 -8.16 16 7 C 0.51 6.22 7.59 -10.99 -0.08 6.14 16 8 O -0.54 -8.32 14.06 5.56 0.08 -8.24 16 9 C -0.14 -1.30 5.18 -27.88 -0.14 -1.44 16 10 C -0.07 -0.69 1.87 -90.40 -0.17 -0.86 16 11 H 0.08 0.89 7.94 -51.93 -0.41 0.48 16 12 C -0.10 -1.13 5.06 -28.13 -0.14 -1.27 16 13 C -0.14 -1.56 9.80 -35.85 -0.35 -1.91 16 14 C -0.17 -1.67 9.80 -35.90 -0.35 -2.02 16 15 C -0.09 -0.73 6.12 -28.17 -0.17 -0.90 16 16 C -0.12 -0.98 5.31 -26.51 -0.14 -1.13 16 17 N -0.65 -9.29 5.38 -107.99 -0.58 -9.87 16 18 C 0.04 0.74 5.32 -4.97 -0.03 0.71 16 19 C 0.44 10.12 7.83 -10.98 -0.09 10.03 16 20 O -0.58 -15.32 15.83 5.54 0.09 -15.23 16 21 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 22 C -0.30 -8.27 9.68 -14.94 -0.14 -8.42 16 23 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 26 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.78 6.36 -51.93 -0.33 0.45 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.96 6.68 -51.93 -0.35 0.61 16 37 H 0.40 3.63 7.23 -40.82 -0.30 3.33 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 40 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 41 H 0.09 1.28 6.25 -51.93 -0.32 0.96 16 42 H 0.10 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.10 0.85 8.06 -52.48 -0.42 0.42 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 48 H 0.34 4.89 7.24 -39.30 -0.28 4.60 16 49 H 0.09 1.42 6.30 -51.93 -0.33 1.09 16 50 H 0.05 0.76 6.41 -51.93 -0.33 0.43 16 51 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 52 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 410.36 15.07 6.18 6.18 Total: -1.00 -32.13 410.36 -9.61 -41.74 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -8.81 Total: 17.25 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.89 Total: -1.62 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.23 Total: -56.04 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.17 Total: -23.48 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.13 -9.61 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318555064.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.005 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds