Wall clock time and date at job start Tue Mar 31 2020 20:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47160 * 2 1 4 4 H 1.09002 * 109.47331 * 302.96215 * 3 2 1 5 5 C 1.53005 * 109.47065 * 182.96741 * 3 2 1 6 6 N 1.46508 * 109.46900 * 185.00081 * 5 3 2 7 7 C 1.34776 * 119.99626 * 179.72441 * 6 5 3 8 8 O 1.21279 * 119.99926 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99695 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.46963 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.63699 * 55.00262 * 10 9 7 12 12 C 1.53019 * 109.64015 * 294.57694 * 10 9 7 13 13 C 1.50168 * 110.09465 * 191.09306 * 12 10 9 14 14 C 1.29441 * 124.14314 * 16.72164 * 13 12 10 15 15 C 1.50070 * 124.08200 * 359.75817 * 14 13 12 16 16 C 1.53034 * 110.14134 * 17.12876 * 15 14 13 17 17 N 1.46898 * 109.47596 * 62.96356 * 3 2 1 18 18 C 1.46900 * 110.99740 * 65.52215 * 17 3 2 19 19 C 1.50706 * 109.47229 * 182.18751 * 18 17 3 20 20 O 1.21295 * 119.99585 * 359.97438 * 19 18 17 21 21 N 1.34773 * 120.00204 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00093 * 179.97438 * 21 19 18 23 23 H 1.08006 * 119.99745 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00280 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99695 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46906 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47267 * 119.99813 * 26 24 22 29 29 H 1.48499 * 109.46968 * 239.99346 * 26 24 22 30 30 H 1.09003 * 109.47072 * 294.77740 * 1 2 3 31 31 H 1.08992 * 109.47334 * 54.77779 * 1 2 3 32 32 H 1.08994 * 109.47041 * 174.78179 * 1 2 3 33 33 H 1.08999 * 109.47549 * 239.99660 * 2 1 3 34 34 H 1.09006 * 109.46901 * 119.99472 * 2 1 3 35 35 H 1.08997 * 109.47535 * 64.99894 * 5 3 2 36 36 H 1.08996 * 109.46891 * 304.99150 * 5 3 2 37 37 H 0.97000 * 119.99750 * 359.97438 * 6 5 3 38 38 H 1.09002 * 109.46902 * 299.99836 * 9 7 6 39 39 H 1.08999 * 109.47618 * 60.00095 * 9 7 6 40 40 H 1.08993 * 109.36030 * 311.08655 * 12 10 9 41 41 H 1.08999 * 109.35476 * 70.67753 * 12 10 9 42 42 H 1.07997 * 117.89478 * 196.92083 * 13 12 10 43 43 H 1.08008 * 117.96027 * 179.73322 * 14 13 12 44 44 H 1.09002 * 109.35636 * 256.92726 * 15 14 13 45 45 H 1.08991 * 109.24946 * 137.26246 * 15 14 13 46 46 H 1.09003 * 109.63689 * 190.88262 * 16 15 14 47 47 H 1.08999 * 109.64200 * 70.25308 * 16 15 14 48 48 H 1.00893 * 111.00369 * 189.47528 * 17 3 2 49 49 H 1.08996 * 109.47610 * 302.18574 * 18 17 3 50 50 H 1.08994 * 109.47244 * 62.18710 * 18 17 3 51 51 H 0.96997 * 119.99900 * 0.02562 * 21 19 18 52 52 H 0.97001 * 119.99726 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6340 1.9714 -0.8622 5 6 3.5682 1.4431 -0.0747 6 7 4.0624 2.8170 0.0455 7 6 5.3873 3.0619 0.0121 8 8 6.1704 2.1448 -0.1170 9 6 5.8957 4.4752 0.1351 10 6 7.4243 4.4750 0.0680 11 1 7.7509 3.9752 -0.8439 12 6 7.9924 3.7448 1.2868 13 6 9.4747 3.9680 1.3774 14 6 10.1083 4.9039 0.7464 15 6 9.4510 5.8948 -0.1691 16 6 7.9409 5.9193 0.0778 17 7 1.6097 2.1141 1.2336 18 6 2.2440 1.5077 2.4117 19 6 1.7387 2.1859 3.6591 20 8 0.9302 3.0861 3.5749 21 7 2.1860 1.7928 4.8682 22 6 1.7268 2.4101 6.0029 23 1 1.0068 3.2117 5.9279 24 6 2.1883 2.0053 7.2494 25 7 3.0647 1.0303 7.3406 26 14 1.5620 2.8459 8.7955 27 1 0.5885 3.9039 8.4239 28 1 0.8971 1.8452 9.6684 29 1 2.7030 3.4571 9.5234 30 1 -0.3633 0.4307 0.9331 31 1 -0.3633 0.5927 -0.8394 32 1 -0.3633 -1.0233 -0.0935 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8855 1.0251 -1.0300 36 1 3.9719 0.8395 0.7382 37 1 3.4362 3.5500 0.1527 38 1 5.4959 5.0774 -0.6808 39 1 5.5742 4.8954 1.0881 40 1 7.5166 4.1256 2.1904 41 1 7.7891 2.6778 1.1959 42 1 10.0482 3.3035 2.0065 43 1 11.1766 4.9764 0.8878 44 1 9.6433 5.6131 -1.2044 45 1 9.8638 6.8860 0.0183 46 1 7.4499 6.4894 -0.7109 47 1 7.7353 6.3755 1.0461 48 1 1.7983 3.1043 1.1909 49 1 1.9989 0.4464 2.4506 50 1 3.3251 1.6287 2.3450 51 1 2.8334 1.0737 4.9355 52 1 3.3872 0.7479 8.2108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318555064.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:21 Heat of formation + Delta-G solvation = -102.741683 kcal Electronic energy + Delta-G solvation = -29763.081044 eV Core-core repulsion = 25760.693713 eV Total energy + Delta-G solvation = -4002.387332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.23233 -40.30005 -39.29855 -38.42685 -35.96703 -34.98433 -33.74456 -33.35088 -32.99783 -31.62309 -30.06181 -28.52364 -27.52490 -26.03225 -24.44603 -23.90742 -22.29755 -21.75891 -21.11701 -20.50418 -19.85921 -18.91605 -18.38832 -17.97161 -17.20668 -17.03699 -16.67602 -16.63240 -16.27312 -15.88429 -15.69564 -15.36516 -15.17698 -15.02292 -14.66593 -14.54973 -14.26722 -13.97051 -13.88611 -13.72308 -13.59269 -13.46586 -13.21546 -13.11177 -12.98775 -12.88079 -12.67294 -12.43965 -12.39931 -12.25708 -12.11682 -11.79662 -11.65692 -11.55301 -11.52491 -11.49575 -11.03477 -10.70838 -10.34812 -10.12268 -10.01901 -9.85443 -9.36072 -8.46991 -5.95880 1.35958 1.40360 1.41199 1.55474 1.65468 2.04529 2.17102 2.28773 2.93215 3.20256 3.51659 3.66372 3.72723 3.74839 3.82757 4.03530 4.10629 4.20412 4.25288 4.30705 4.38571 4.40163 4.45716 4.46819 4.56219 4.56867 4.68332 4.69771 4.72910 4.75670 4.79812 4.92207 4.95594 4.99524 5.03931 5.10167 5.19269 5.20663 5.34646 5.37291 5.40578 5.42090 5.49992 5.58197 5.77358 5.87087 6.07347 6.07648 6.39717 6.49455 6.58635 7.12136 7.24608 7.55628 8.10084 8.70668 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007401 B = 0.003231 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3782.219560 B = 8662.772064 C =11585.383427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.087 3.913 4 H 0.112 0.888 5 C 0.085 3.915 6 N -0.724 5.724 7 C 0.508 3.492 8 O -0.576 6.576 9 C -0.135 4.135 10 C -0.065 4.065 11 H 0.066 0.934 12 C -0.093 4.093 13 C -0.170 4.170 14 C -0.160 4.160 15 C -0.091 4.091 16 C -0.113 4.113 17 N -0.659 5.659 18 C 0.065 3.935 19 C 0.441 3.559 20 O -0.617 6.617 21 N -0.576 5.576 22 C -0.330 4.330 23 H 0.081 0.919 24 C -0.015 4.015 25 N -0.922 5.922 26 Si 0.992 3.008 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.408 0.592 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.345 0.655 49 H 0.099 0.901 50 H 0.055 0.945 51 H 0.393 0.607 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.349 5.497 -19.103 21.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C -0.023 4.023 4 H 0.130 0.870 5 C -0.040 4.040 6 N -0.377 5.377 7 C 0.296 3.704 8 O -0.456 6.456 9 C -0.174 4.174 10 C -0.084 4.084 11 H 0.085 0.915 12 C -0.130 4.130 13 C -0.188 4.188 14 C -0.178 4.178 15 C -0.128 4.128 16 C -0.150 4.150 17 N -0.291 5.291 18 C -0.068 4.068 19 C 0.228 3.772 20 O -0.504 6.504 21 N -0.213 5.213 22 C -0.460 4.460 23 H 0.099 0.901 24 C -0.214 4.214 25 N -0.563 5.563 26 Si 0.816 3.184 27 H -0.195 1.195 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.245 0.755 38 H 0.143 0.857 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.129 0.871 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.082 0.918 48 H 0.165 0.835 49 H 0.117 0.883 50 H 0.073 0.927 51 H 0.226 0.774 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.859 4.985 -19.026 21.181 hybrid contribution 0.863 0.092 1.335 1.592 sum 8.722 5.077 -17.691 20.367 Atomic orbital electron populations 1.21565 0.94949 1.01154 1.01836 1.21539 0.96932 0.94159 1.02588 1.22033 0.90135 0.97392 0.92755 0.86988 1.22085 0.96356 0.83448 1.02153 1.46008 1.07409 1.09860 1.74452 1.21242 0.81904 0.92428 0.74781 1.90663 1.56286 1.47982 1.50643 1.21842 0.96934 0.92549 1.06093 1.20884 0.92544 0.96791 0.98165 0.91541 1.20589 0.93353 1.01050 0.98040 1.22155 0.96250 0.99277 1.01152 1.22283 1.00091 0.96809 0.98603 1.20510 0.94840 0.98618 0.98837 1.21687 0.95663 0.94828 1.02870 1.60200 1.61010 1.07641 1.00258 1.21511 0.96749 0.99820 0.88677 1.20811 0.84805 0.86198 0.85357 1.90488 1.38105 1.34499 1.87268 1.41966 1.40214 1.34044 1.05037 1.19701 1.24304 1.17197 0.84767 0.90099 1.26056 0.96431 0.97121 1.01809 1.69693 1.31185 1.28649 1.26822 0.84876 0.78199 0.78123 0.77192 1.19500 1.19735 1.19713 0.94149 0.92010 0.92593 0.89405 0.92729 0.90523 0.93030 0.75531 0.85680 0.88036 0.92113 0.91977 0.88597 0.87091 0.90218 0.89494 0.89358 0.91754 0.83474 0.88348 0.92734 0.77353 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.71 71.98 0.70 -2.18 16 2 C -0.11 -2.21 5.29 30.59 0.16 -2.05 16 3 C 0.09 1.71 2.73 44.92 0.12 1.83 16 4 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 5 C 0.09 1.81 4.47 86.38 0.39 2.19 16 6 N -0.72 -14.63 5.31 -463.05 -2.46 -17.09 16 7 C 0.51 12.04 7.59 87.66 0.66 12.70 16 8 O -0.58 -18.20 14.06 -3.03 -0.04 -18.24 16 9 C -0.13 -2.32 5.18 29.85 0.15 -2.17 16 10 C -0.06 -1.27 1.87 -10.65 -0.02 -1.29 16 11 H 0.07 1.47 7.94 -2.39 -0.02 1.46 16 12 C -0.09 -2.30 5.06 29.69 0.15 -2.15 16 13 C -0.17 -3.85 9.80 27.07 0.27 -3.58 16 14 C -0.16 -2.96 9.80 27.04 0.27 -2.69 16 15 C -0.09 -1.31 6.12 29.66 0.18 -1.13 16 16 C -0.11 -1.66 5.31 30.74 0.16 -1.50 16 17 N -0.66 -18.12 5.38 -495.58 -2.66 -20.79 16 18 C 0.06 2.18 5.32 85.56 0.46 2.63 16 19 C 0.44 20.58 7.83 87.66 0.69 21.27 16 20 O -0.62 -33.00 15.83 -3.08 -0.05 -33.04 16 21 N -0.58 -29.66 5.29 -306.98 -1.62 -31.28 16 22 C -0.33 -18.73 9.68 84.04 0.81 -17.91 16 23 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 24 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 25 N -0.92 -50.49 13.05 21.66 0.28 -50.20 16 26 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 28 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 29 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 30 H 0.04 1.10 7.85 -2.39 -0.02 1.08 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.20 6.36 -2.38 -0.02 1.19 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 1.33 6.68 -2.39 -0.02 1.32 16 37 H 0.41 6.69 7.23 -92.71 -0.67 6.02 16 38 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.10 1.69 8.10 -2.39 -0.02 1.67 16 40 H 0.06 1.55 8.07 -2.39 -0.02 1.53 16 41 H 0.06 1.88 6.25 -2.39 -0.01 1.86 16 42 H 0.10 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.11 1.75 8.06 -2.91 -0.02 1.72 16 44 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 48 H 0.35 9.41 7.24 -89.70 -0.65 8.76 16 49 H 0.10 3.15 6.30 -2.39 -0.02 3.13 16 50 H 0.05 1.77 6.41 -2.39 -0.02 1.76 16 51 H 0.39 19.68 7.90 -92.71 -0.73 18.95 16 52 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -71.39 410.36 -0.03 -71.42 By element: Atomic # 1 Polarization: 51.60 SS G_CDS: -1.12 Total: 50.48 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 5.62 Total: 3.66 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -6.46 Total: -119.36 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -0.09 Total: -51.29 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -71.39 -0.03 -71.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318555064.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.326 kcal (2) G-P(sol) polarization free energy of solvation -71.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds