Wall clock time and date at job start Tue Mar 31 2020 20:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46707 * 2 1 4 4 H 1.08997 * 109.47389 * 55.00162 * 3 2 1 5 5 C 1.53002 * 109.46916 * 175.00316 * 3 2 1 6 6 N 1.46498 * 109.47174 * 175.00050 * 5 3 2 7 7 C 1.34774 * 120.00185 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99803 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00283 * 179.97438 * 7 6 5 10 10 H 1.09002 * 110.85869 * 56.21350 * 9 7 6 11 11 C 1.54627 * 110.97049 * 292.38005 * 9 7 6 12 12 C 1.51281 * 104.19791 * 217.08157 * 11 9 7 13 13 O 1.21280 * 124.94605 * 196.25397 * 12 11 9 14 14 N 1.34419 * 110.11174 * 16.25213 * 12 11 9 15 15 C 1.46506 * 124.34857 * 180.42630 * 14 12 11 16 16 C 1.54272 * 110.03058 * 57.88739 * 15 14 12 17 17 C 1.54965 * 104.16067 * 217.13749 * 16 15 14 18 18 C 1.54891 * 102.77778 * 37.88621 * 17 16 15 19 19 C 1.53876 * 110.03163 * 300.67122 * 15 14 12 20 20 C 1.46759 * 111.30653 * 0.40744 * 14 12 11 21 21 N 1.46501 * 109.47078 * 294.99854 * 3 2 1 22 22 C 1.36935 * 119.99801 * 85.00491 * 21 3 2 23 23 H 1.08003 * 120.00239 * 359.97438 * 22 21 3 24 24 C 1.38811 * 119.99745 * 180.02562 * 22 21 3 25 25 N 1.31620 * 120.00372 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99955 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46845 * 269.99982 * 26 24 22 28 28 H 1.48503 * 109.47399 * 29.99472 * 26 24 22 29 29 H 1.48498 * 109.47295 * 150.00079 * 26 24 22 30 30 H 1.09001 * 109.47079 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46929 * 299.99945 * 1 2 3 32 32 H 1.08993 * 109.47233 * 59.99872 * 1 2 3 33 33 H 1.08998 * 109.46929 * 240.00055 * 2 1 3 34 34 H 1.09001 * 109.47161 * 119.99489 * 2 1 3 35 35 H 1.09000 * 109.46773 * 294.99949 * 5 3 2 36 36 H 1.08998 * 109.47176 * 54.99824 * 5 3 2 37 37 H 0.97001 * 119.99813 * 359.97438 * 6 5 3 38 38 H 1.08995 * 110.49047 * 335.76252 * 11 9 7 39 39 H 1.09005 * 110.48548 * 98.40838 * 11 9 7 40 40 H 1.08992 * 110.02064 * 179.27770 * 15 14 12 41 41 H 1.08999 * 110.48387 * 335.78240 * 16 15 14 42 42 H 1.08997 * 110.48951 * 98.42536 * 16 15 14 43 43 H 1.08998 * 110.71796 * 279.57754 * 17 16 15 44 44 H 1.08999 * 110.92324 * 156.29345 * 17 16 15 45 45 H 1.09000 * 110.48886 * 203.40843 * 18 17 16 46 46 H 1.09003 * 110.48888 * 80.76064 * 18 17 16 47 47 H 1.09002 * 110.02894 * 238.56389 * 19 15 14 48 48 H 1.08995 * 110.03607 * 0.02562 * 19 15 14 49 49 H 1.08995 * 110.24666 * 223.98351 * 20 14 12 50 50 H 1.09002 * 110.24456 * 101.97779 * 20 14 12 51 51 H 0.97000 * 119.99781 * 265.00272 * 21 3 2 52 52 H 0.97000 * 119.99954 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1256 6 7 4.0630 2.8169 0.0059 7 6 5.3855 3.0632 0.0867 8 8 6.1633 2.1487 0.2591 9 6 5.8980 4.4749 -0.0370 10 1 5.4298 5.1241 0.7029 11 6 5.6810 5.0190 -1.4681 12 6 6.9117 5.8566 -1.7372 13 8 7.0131 6.6772 -2.6244 14 7 7.8764 5.5590 -0.8498 15 6 9.1966 6.1936 -0.8201 16 6 9.0455 7.7201 -0.6559 17 6 10.1749 8.3099 -1.5380 18 6 10.1865 7.3591 -2.7606 19 6 9.9220 5.9640 -2.1575 20 6 7.4374 4.5171 0.0859 21 7 1.6523 2.0975 -1.2518 22 6 0.4155 2.6735 -1.3688 23 1 -0.2744 2.6446 -0.5383 24 6 0.0481 3.2935 -2.5551 25 7 0.8886 3.3284 -3.5674 26 14 -1.6388 4.0799 -2.7144 27 1 -2.6058 3.0770 -3.2287 28 1 -2.0875 4.5630 -1.3838 29 1 -1.5643 5.2246 -3.6575 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8498 1.0378 1.0960 36 1 3.9953 0.8312 -0.6660 37 1 3.4409 3.5484 -0.1316 38 1 5.6145 4.1983 -2.1823 39 1 4.7832 5.6359 -1.5096 40 1 9.7879 5.7866 0.0001 41 1 8.0702 8.0478 -1.0156 42 1 9.1850 8.0074 0.3863 43 1 11.1302 8.2772 -1.0142 44 1 9.9381 9.3291 -1.8435 45 1 11.1583 7.3835 -3.2537 46 1 9.3955 7.6281 -3.4607 47 1 10.8658 5.4462 -1.9862 48 1 9.2918 5.3808 -2.8289 49 1 7.7276 4.7775 1.1037 50 1 7.8646 3.5542 -0.1944 51 1 2.2719 2.1231 -1.9978 52 1 1.7650 2.9210 -3.4843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318604293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:57 Heat of formation + Delta-G solvation = -75.126983 kcal Electronic energy + Delta-G solvation = -30223.832447 eV Core-core repulsion = 26222.642578 eV Total energy + Delta-G solvation = -4001.189868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.05780 -39.44177 -37.54372 -36.99046 -36.04606 -33.98062 -32.73163 -32.16876 -29.67982 -28.90812 -28.28617 -27.74160 -27.28129 -24.08650 -23.15094 -22.13432 -21.63283 -20.85980 -20.38721 -19.68804 -18.85083 -17.74251 -17.39187 -16.87830 -16.35584 -15.80227 -15.47932 -15.24329 -15.03018 -14.68247 -14.39350 -14.27944 -13.77837 -13.71535 -13.64352 -13.40498 -13.26627 -13.24065 -13.16179 -12.67953 -12.09175 -11.92888 -11.77848 -11.66606 -11.63852 -11.40399 -11.28864 -11.26119 -11.09091 -11.03794 -10.81929 -10.71285 -10.62203 -10.40697 -10.15491 -9.97988 -9.93174 -9.55856 -9.25693 -9.00271 -8.85064 -8.76620 -7.15128 -6.15983 -3.18633 2.53877 2.65443 2.77475 3.33304 3.47527 3.50683 3.65080 4.13752 4.22120 4.39959 4.46452 4.59128 4.66904 4.70033 4.83077 5.06596 5.10555 5.24447 5.25979 5.26764 5.31251 5.32199 5.36833 5.46048 5.49076 5.53431 5.62459 5.70445 5.73501 5.76555 5.77885 5.82541 5.83831 5.85350 5.97267 6.00677 6.01150 6.22387 6.25635 6.40902 6.45500 6.49832 6.54769 6.71415 6.89034 7.01419 7.16410 7.70002 7.74171 8.13265 8.31652 8.67386 9.11430 9.98297 10.12888 11.30724 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.002739 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.665227 B =10219.153319 C =11765.836169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.055 0.945 5 C 0.113 3.887 6 N -0.708 5.708 7 C 0.522 3.478 8 O -0.549 6.549 9 C -0.123 4.123 10 H 0.115 0.885 11 C -0.145 4.145 12 C 0.522 3.478 13 O -0.521 6.521 14 N -0.617 5.617 15 C 0.155 3.845 16 C -0.135 4.135 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.132 4.132 20 C 0.119 3.881 21 N -0.732 5.732 22 C -0.330 4.330 23 H 0.068 0.932 24 C -0.041 4.041 25 N -0.940 5.940 26 Si 1.077 2.923 27 H -0.296 1.296 28 H -0.295 1.295 29 H -0.288 1.288 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.412 0.588 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.081 0.919 50 H 0.091 0.909 51 H 0.367 0.633 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.849 4.417 9.774 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.073 0.927 5 C -0.012 4.012 6 N -0.358 5.358 7 C 0.307 3.693 8 O -0.427 6.427 9 C -0.145 4.145 10 H 0.133 0.867 11 C -0.186 4.186 12 C 0.310 3.690 13 O -0.396 6.396 14 N -0.352 5.352 15 C 0.052 3.948 16 C -0.173 4.173 17 C -0.158 4.158 18 C -0.158 4.158 19 C -0.170 4.170 20 C -0.005 4.005 21 N -0.376 5.376 22 C -0.461 4.461 23 H 0.086 0.914 24 C -0.240 4.240 25 N -0.584 5.584 26 Si 0.908 3.092 27 H -0.224 1.224 28 H -0.222 1.222 29 H -0.214 1.214 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.248 0.752 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.099 0.901 50 H 0.109 0.891 51 H 0.201 0.799 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.324 5.074 8.580 18.280 hybrid contribution 0.712 -0.781 0.888 1.380 sum 16.036 4.293 9.468 19.110 Atomic orbital electron populations 1.21765 0.95550 0.99634 1.03374 1.22062 0.97166 0.98247 0.99953 1.20502 0.89703 0.92807 0.91160 0.92697 1.21728 0.95753 0.82428 1.01267 1.45970 1.06946 1.11013 1.71914 1.20008 0.82724 0.89908 0.76643 1.90682 1.55992 1.46064 1.49987 1.22203 0.97054 0.95877 0.99349 0.86668 1.22363 0.98826 1.01447 0.95921 1.20717 0.85068 0.82342 0.80885 1.90719 1.82096 1.34441 1.32359 1.48503 1.14213 1.39685 1.32786 1.21659 0.81896 0.92879 0.98357 1.22755 1.00690 0.94065 0.99835 1.22415 0.97988 0.99081 0.96268 1.22297 1.01508 0.94161 0.97819 1.22483 1.00010 0.98251 0.96296 1.21971 0.92355 0.92287 0.93857 1.42461 1.16854 1.67048 1.11229 1.20000 0.92610 1.32493 1.00975 0.91441 1.25684 1.05630 1.00345 0.92300 1.70869 1.08308 1.47203 1.32062 0.83266 0.74424 0.76474 0.75006 1.22390 1.22169 1.21434 0.94867 0.94089 0.89585 0.92707 0.93789 0.91611 0.91837 0.75187 0.87193 0.86790 0.89078 0.90157 0.91511 0.91658 0.91425 0.91967 0.90707 0.91395 0.91080 0.90055 0.89088 0.79908 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.18 37.16 0.34 -2.20 16 2 C -0.13 -2.21 5.61 -26.73 -0.15 -2.36 16 3 C 0.17 2.94 2.59 -67.93 -0.18 2.76 16 4 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.11 1.74 5.23 -4.04 -0.02 1.72 16 6 N -0.71 -10.26 5.39 -60.30 -0.32 -10.59 16 7 C 0.52 7.27 7.06 -10.99 -0.08 7.20 16 8 O -0.55 -9.15 15.50 5.55 0.09 -9.07 16 9 C -0.12 -1.35 3.54 -90.14 -0.32 -1.67 16 10 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 11 C -0.15 -1.83 6.41 -26.74 -0.17 -2.00 16 12 C 0.52 7.20 6.83 -10.86 -0.07 7.12 16 13 O -0.52 -8.80 15.90 5.56 0.09 -8.71 16 14 N -0.62 -6.91 2.83 -163.57 -0.46 -7.37 16 15 C 0.15 1.50 3.54 -66.81 -0.24 1.27 16 16 C -0.14 -1.29 6.30 -25.03 -0.16 -1.45 16 17 C -0.12 -1.03 6.91 -24.70 -0.17 -1.20 16 18 C -0.12 -1.18 6.83 -25.07 -0.17 -1.35 16 19 C -0.13 -1.34 6.00 -25.61 -0.15 -1.49 16 20 C 0.12 1.21 6.67 -3.12 -0.02 1.19 16 21 N -0.73 -15.78 4.50 -53.42 -0.24 -16.02 16 22 C -0.33 -8.15 7.75 -15.06 -0.12 -8.27 16 23 H 0.07 1.66 7.32 -52.48 -0.38 1.28 16 24 C -0.04 -1.10 5.50 -17.43 -0.10 -1.20 16 25 N -0.94 -27.15 13.70 55.49 0.76 -26.39 16 26 Si 1.08 24.56 29.92 -169.99 -5.09 19.48 16 27 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.79 5.99 -51.93 -0.31 1.48 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.41 6.10 8.14 -40.82 -0.33 5.77 16 38 H 0.11 1.51 7.89 -51.93 -0.41 1.10 16 39 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 41 H 0.08 0.98 6.51 -51.93 -0.34 0.64 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.89 7.32 -51.93 -0.38 0.51 16 49 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.09 1.06 6.96 -51.93 -0.36 0.70 16 51 H 0.37 8.46 6.63 -40.82 -0.27 8.19 16 52 H 0.26 7.28 6.77 -40.82 -0.28 7.00 16 LS Contribution 406.76 15.07 6.13 6.13 Total: -1.00 -30.56 406.76 -9.86 -40.42 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -9.04 Total: 14.04 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.77 Total: -1.93 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.27 Total: -60.37 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.17 Total: -17.78 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.09 Total: 19.48 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.56 -9.86 -40.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318604293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.709 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds