Wall clock time and date at job start Tue Mar 31 2020 20:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46707 * 2 1 4 4 H 1.08997 * 109.47389 * 55.00162 * 3 2 1 5 5 C 1.53002 * 109.46916 * 175.00316 * 3 2 1 6 6 N 1.46498 * 109.47174 * 175.00050 * 5 3 2 7 7 C 1.34774 * 120.00185 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99803 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00283 * 179.97438 * 7 6 5 10 10 H 1.09002 * 110.85869 * 56.21350 * 9 7 6 11 11 C 1.54627 * 110.97049 * 292.38005 * 9 7 6 12 12 C 1.51281 * 104.19791 * 217.08157 * 11 9 7 13 13 O 1.21280 * 124.94605 * 196.25397 * 12 11 9 14 14 N 1.34419 * 110.11174 * 16.25213 * 12 11 9 15 15 C 1.46506 * 124.34857 * 180.42630 * 14 12 11 16 16 C 1.54272 * 110.03058 * 57.88739 * 15 14 12 17 17 C 1.54965 * 104.16067 * 217.13749 * 16 15 14 18 18 C 1.54891 * 102.77778 * 37.88621 * 17 16 15 19 19 C 1.53876 * 110.03163 * 300.67122 * 15 14 12 20 20 C 1.46759 * 111.30653 * 0.40744 * 14 12 11 21 21 N 1.46501 * 109.47078 * 294.99854 * 3 2 1 22 22 C 1.36935 * 119.99801 * 85.00491 * 21 3 2 23 23 H 1.08003 * 120.00239 * 359.97438 * 22 21 3 24 24 C 1.38811 * 119.99745 * 180.02562 * 22 21 3 25 25 N 1.31620 * 120.00372 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99955 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46845 * 269.99982 * 26 24 22 28 28 H 1.48503 * 109.47399 * 29.99472 * 26 24 22 29 29 H 1.48498 * 109.47295 * 150.00079 * 26 24 22 30 30 H 1.09001 * 109.47079 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46929 * 299.99945 * 1 2 3 32 32 H 1.08993 * 109.47233 * 59.99872 * 1 2 3 33 33 H 1.08998 * 109.46929 * 240.00055 * 2 1 3 34 34 H 1.09001 * 109.47161 * 119.99489 * 2 1 3 35 35 H 1.09000 * 109.46773 * 294.99949 * 5 3 2 36 36 H 1.08998 * 109.47176 * 54.99824 * 5 3 2 37 37 H 0.97001 * 119.99813 * 359.97438 * 6 5 3 38 38 H 1.08995 * 110.49047 * 335.76252 * 11 9 7 39 39 H 1.09005 * 110.48548 * 98.40838 * 11 9 7 40 40 H 1.08992 * 110.02064 * 179.27770 * 15 14 12 41 41 H 1.08999 * 110.48387 * 335.78240 * 16 15 14 42 42 H 1.08997 * 110.48951 * 98.42536 * 16 15 14 43 43 H 1.08998 * 110.71796 * 279.57754 * 17 16 15 44 44 H 1.08999 * 110.92324 * 156.29345 * 17 16 15 45 45 H 1.09000 * 110.48886 * 203.40843 * 18 17 16 46 46 H 1.09003 * 110.48888 * 80.76064 * 18 17 16 47 47 H 1.09002 * 110.02894 * 238.56389 * 19 15 14 48 48 H 1.08995 * 110.03607 * 0.02562 * 19 15 14 49 49 H 1.08995 * 110.24666 * 223.98351 * 20 14 12 50 50 H 1.09002 * 110.24456 * 101.97779 * 20 14 12 51 51 H 0.97000 * 119.99781 * 265.00272 * 21 3 2 52 52 H 0.97000 * 119.99954 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1256 6 7 4.0630 2.8169 0.0059 7 6 5.3855 3.0632 0.0867 8 8 6.1633 2.1487 0.2591 9 6 5.8980 4.4749 -0.0370 10 1 5.4298 5.1241 0.7029 11 6 5.6810 5.0190 -1.4681 12 6 6.9117 5.8566 -1.7372 13 8 7.0131 6.6772 -2.6244 14 7 7.8764 5.5590 -0.8498 15 6 9.1966 6.1936 -0.8201 16 6 9.0455 7.7201 -0.6559 17 6 10.1749 8.3099 -1.5380 18 6 10.1865 7.3591 -2.7606 19 6 9.9220 5.9640 -2.1575 20 6 7.4374 4.5171 0.0859 21 7 1.6523 2.0975 -1.2518 22 6 0.4155 2.6735 -1.3688 23 1 -0.2744 2.6446 -0.5383 24 6 0.0481 3.2935 -2.5551 25 7 0.8886 3.3284 -3.5674 26 14 -1.6388 4.0799 -2.7144 27 1 -2.6058 3.0770 -3.2287 28 1 -2.0875 4.5630 -1.3838 29 1 -1.5643 5.2246 -3.6575 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8498 1.0378 1.0960 36 1 3.9953 0.8312 -0.6660 37 1 3.4409 3.5484 -0.1316 38 1 5.6145 4.1983 -2.1823 39 1 4.7832 5.6359 -1.5096 40 1 9.7879 5.7866 0.0001 41 1 8.0702 8.0478 -1.0156 42 1 9.1850 8.0074 0.3863 43 1 11.1302 8.2772 -1.0142 44 1 9.9381 9.3291 -1.8435 45 1 11.1583 7.3835 -3.2537 46 1 9.3955 7.6281 -3.4607 47 1 10.8658 5.4462 -1.9862 48 1 9.2918 5.3808 -2.8289 49 1 7.7276 4.7775 1.1037 50 1 7.8646 3.5542 -0.1944 51 1 2.2719 2.1231 -1.9978 52 1 1.7650 2.9210 -3.4843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318604293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:56 Heat of formation + Delta-G solvation = -94.229042 kcal Electronic energy + Delta-G solvation = -30224.660774 eV Core-core repulsion = 26222.642578 eV Total energy + Delta-G solvation = -4002.018196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.06754 -40.58460 -38.53353 -38.34560 -37.15337 -35.42950 -34.34897 -33.15512 -31.31808 -29.67067 -29.59541 -28.73343 -28.32348 -25.62847 -24.69053 -23.32573 -22.52501 -21.76623 -21.61317 -20.89442 -19.81431 -19.43013 -18.64573 -17.81405 -17.38493 -17.01227 -16.72246 -16.44325 -16.08936 -15.97347 -15.74181 -15.47061 -15.29676 -14.84360 -14.76923 -14.65120 -14.42430 -14.26272 -14.16720 -13.97804 -13.53584 -13.17563 -12.83055 -12.73880 -12.64169 -12.57426 -12.49555 -12.33480 -12.08536 -12.06587 -11.96705 -11.95567 -11.86698 -11.80544 -11.53307 -11.49292 -11.17113 -11.10852 -10.86423 -10.67015 -10.07687 -9.70881 -9.04446 -8.23532 -5.19533 1.44498 1.52675 1.62665 1.70585 1.83852 1.84465 2.22688 2.76342 3.16022 3.30515 3.51283 3.63933 3.65181 3.68849 3.78591 3.81144 3.89009 3.99042 4.12352 4.31311 4.37053 4.42590 4.43920 4.47023 4.51269 4.54204 4.56288 4.57961 4.70063 4.74324 4.75085 4.80299 4.87628 4.89156 4.99766 5.04910 5.05701 5.07857 5.15893 5.19386 5.24382 5.42069 5.45736 5.51231 5.66479 5.68993 5.76156 6.04163 6.51220 6.61320 7.08611 7.14849 7.18244 8.08122 8.20227 9.26847 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.002739 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.665227 B =10219.153319 C =11765.836169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.169 3.831 4 H 0.059 0.941 5 C 0.122 3.878 6 N -0.708 5.708 7 C 0.526 3.474 8 O -0.574 6.574 9 C -0.110 4.110 10 H 0.145 0.855 11 C -0.143 4.143 12 C 0.516 3.484 13 O -0.561 6.561 14 N -0.608 5.608 15 C 0.147 3.853 16 C -0.133 4.133 17 C -0.114 4.114 18 C -0.122 4.122 19 C -0.132 4.132 20 C 0.122 3.878 21 N -0.738 5.738 22 C -0.301 4.301 23 H 0.072 0.928 24 C -0.103 4.103 25 N -0.981 5.981 26 Si 1.117 2.883 27 H -0.294 1.294 28 H -0.271 1.271 29 H -0.303 1.303 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.411 0.589 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.124 0.876 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.040 0.960 47 H 0.091 0.909 48 H 0.038 0.962 49 H 0.115 0.885 50 H 0.079 0.921 51 H 0.358 0.642 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.888 4.224 13.073 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.061 3.939 4 H 0.077 0.923 5 C -0.003 4.003 6 N -0.359 5.359 7 C 0.312 3.688 8 O -0.454 6.454 9 C -0.131 4.131 10 H 0.163 0.837 11 C -0.184 4.184 12 C 0.304 3.696 13 O -0.439 6.439 14 N -0.340 5.340 15 C 0.045 3.955 16 C -0.171 4.171 17 C -0.152 4.152 18 C -0.160 4.160 19 C -0.171 4.171 20 C -0.001 4.001 21 N -0.381 5.381 22 C -0.433 4.433 23 H 0.089 0.911 24 C -0.295 4.295 25 N -0.630 5.630 26 Si 0.944 3.056 27 H -0.222 1.222 28 H -0.196 1.196 29 H -0.230 1.230 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.247 0.753 38 H 0.111 0.889 39 H 0.130 0.870 40 H 0.142 0.858 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.059 0.941 47 H 0.109 0.891 48 H 0.057 0.943 49 H 0.134 0.866 50 H 0.098 0.902 51 H 0.190 0.810 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.374 4.844 11.960 20.847 hybrid contribution 0.425 -0.825 -0.070 0.931 sum 16.799 4.020 11.891 20.970 Atomic orbital electron populations 1.21691 0.96044 1.00496 1.01773 1.21995 0.96625 0.97462 1.00992 1.20657 0.91131 0.93026 0.89117 0.92348 1.21582 0.94040 0.82927 1.01737 1.45972 1.07342 1.10598 1.71955 1.20377 0.82093 0.90750 0.75591 1.90675 1.56417 1.47165 1.51145 1.22188 0.97962 0.94248 0.98713 0.83720 1.22279 0.98547 1.00729 0.96826 1.20883 0.85929 0.81996 0.80825 1.90697 1.82889 1.36277 1.34087 1.48567 1.14321 1.39211 1.31949 1.21969 0.81234 0.93160 0.99104 1.22732 0.99350 0.93896 1.01171 1.22424 0.98883 0.98407 0.95476 1.22279 1.01068 0.94580 0.98039 1.22502 1.00524 0.98048 0.96007 1.22060 0.91409 0.91472 0.95152 1.42589 1.15783 1.67259 1.12456 1.20219 0.93221 1.29658 1.00158 0.91055 1.26732 1.07867 1.02137 0.92742 1.70972 1.08571 1.49934 1.33488 0.82726 0.71787 0.75336 0.75705 1.22187 1.19595 1.22975 0.92942 0.93191 0.93437 0.93870 0.90473 0.89706 0.93170 0.75291 0.88947 0.87014 0.85788 0.93369 0.89196 0.89016 0.91688 0.90368 0.94109 0.89073 0.94292 0.86649 0.90240 0.80979 0.94527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 9.18 71.98 0.66 -4.04 16 2 C -0.13 -4.05 5.61 30.60 0.17 -3.88 16 3 C 0.17 5.65 2.59 44.99 0.12 5.76 16 4 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 5 C 0.12 3.58 5.23 86.38 0.45 4.03 16 6 N -0.71 -19.80 5.39 -463.07 -2.49 -22.30 16 7 C 0.53 13.97 7.06 87.66 0.62 14.58 16 8 O -0.57 -18.36 15.50 -3.04 -0.05 -18.41 16 9 C -0.11 -2.23 3.54 -10.48 -0.04 -2.27 16 10 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 11 C -0.14 -3.69 6.41 30.59 0.20 -3.49 16 12 C 0.52 14.61 6.83 87.90 0.60 15.21 16 13 O -0.56 -20.14 15.90 -3.03 -0.05 -20.19 16 14 N -0.61 -12.97 2.83 -790.01 -2.23 -15.20 16 15 C 0.15 2.57 3.54 45.72 0.16 2.73 16 16 C -0.13 -2.34 6.30 31.70 0.20 -2.14 16 17 C -0.11 -1.78 6.91 31.91 0.22 -1.56 16 18 C -0.12 -2.37 6.83 31.67 0.22 -2.16 16 19 C -0.13 -2.59 6.00 31.32 0.19 -2.40 16 20 C 0.12 2.21 6.67 86.83 0.58 2.79 16 21 N -0.74 -31.81 4.50 -322.93 -1.45 -33.26 16 22 C -0.30 -14.80 7.75 84.03 0.65 -14.14 16 23 H 0.07 3.43 7.32 -2.91 -0.02 3.41 16 24 C -0.10 -5.56 5.50 84.86 0.47 -5.09 16 25 N -0.98 -58.37 13.70 21.65 0.30 -58.07 16 26 Si 1.12 49.94 29.92 68.60 2.05 52.00 16 27 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 28 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 29 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.93 5.99 -2.39 -0.01 1.92 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.41 11.85 8.14 -92.71 -0.75 11.10 16 38 H 0.09 2.70 7.89 -2.39 -0.02 2.68 16 39 H 0.11 2.89 8.14 -2.38 -0.02 2.88 16 40 H 0.12 1.40 8.08 -2.39 -0.02 1.38 16 41 H 0.05 1.18 6.51 -2.39 -0.02 1.16 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.04 1.06 8.05 -2.39 -0.02 1.04 16 47 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.04 1.01 7.32 -2.39 -0.02 0.99 16 49 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.08 1.71 6.96 -2.39 -0.02 1.69 16 51 H 0.36 16.89 6.63 -92.71 -0.61 16.27 16 52 H 0.24 14.47 6.77 -92.71 -0.63 13.85 16 Total: -1.00 -68.95 406.76 1.22 -67.73 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -0.31 Total: 43.76 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 5.46 Total: 3.95 kcal Atomic # 7 Polarization: -122.95 SS G_CDS: -5.89 Total: -128.83 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.10 Total: -38.60 kcal Atomic # 14 Polarization: 49.94 SS G_CDS: 2.05 Total: 52.00 kcal Total: -68.95 1.22 -67.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318604293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.500 kcal (2) G-P(sol) polarization free energy of solvation -68.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds