Wall clock time and date at job start Tue Mar 31 2020 20:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46989 * 2 1 4 4 H 1.08997 * 109.46828 * 304.99870 * 3 2 1 5 5 C 1.53006 * 109.46811 * 184.99907 * 3 2 1 6 6 N 1.46500 * 109.46998 * 184.99974 * 5 3 2 7 7 C 1.34769 * 120.00237 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99854 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00461 * 180.02562 * 7 6 5 10 10 H 1.09002 * 110.85413 * 303.78913 * 9 7 6 11 11 C 1.54635 * 110.96851 * 67.61505 * 9 7 6 12 12 C 1.51283 * 104.19066 * 93.32332 * 11 9 7 13 13 O 1.21277 * 124.93891 * 196.25230 * 12 11 9 14 14 N 1.34418 * 110.11958 * 16.25533 * 12 11 9 15 15 C 1.46495 * 124.35362 * 180.38539 * 14 12 11 16 16 C 1.54271 * 110.03141 * 57.92605 * 15 14 12 17 17 C 1.54960 * 104.16121 * 217.13856 * 16 15 14 18 18 C 1.54889 * 102.77828 * 37.89092 * 17 16 15 19 19 C 1.53881 * 110.03143 * 300.71137 * 15 14 12 20 20 C 1.46768 * 111.29784 * 0.40520 * 14 12 11 21 21 N 1.46493 * 109.47168 * 64.99987 * 3 2 1 22 22 C 1.36940 * 120.00317 * 274.99962 * 21 3 2 23 23 H 1.07999 * 119.99727 * 359.97438 * 22 21 3 24 24 C 1.38806 * 120.00128 * 180.02562 * 22 21 3 25 25 N 1.31615 * 120.00100 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99731 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47463 * 89.99524 * 26 24 22 28 28 H 1.48497 * 109.47178 * 209.99762 * 26 24 22 29 29 H 1.48495 * 109.46984 * 329.99589 * 26 24 22 30 30 H 1.08995 * 109.47199 * 300.00210 * 1 2 3 31 31 H 1.09004 * 109.46840 * 60.00285 * 1 2 3 32 32 H 1.09007 * 109.47278 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47020 * 240.00118 * 2 1 3 34 34 H 1.08996 * 109.46961 * 119.99940 * 2 1 3 35 35 H 1.08993 * 109.46955 * 305.00200 * 5 3 2 36 36 H 1.09000 * 109.47050 * 65.00029 * 5 3 2 37 37 H 0.97010 * 119.99909 * 359.97438 * 6 5 3 38 38 H 1.08995 * 110.48852 * 212.00354 * 11 9 7 39 39 H 1.09004 * 110.48376 * 334.64953 * 11 9 7 40 40 H 1.09004 * 110.02153 * 179.32053 * 15 14 12 41 41 H 1.08996 * 110.48729 * 335.79246 * 16 15 14 42 42 H 1.09004 * 110.47983 * 98.42815 * 16 15 14 43 43 H 1.09001 * 110.72059 * 279.57792 * 17 16 15 44 44 H 1.08998 * 110.92366 * 156.30107 * 17 16 15 45 45 H 1.09001 * 110.48769 * 203.41033 * 18 17 16 46 46 H 1.08994 * 110.48867 * 80.76075 * 18 17 16 47 47 H 1.08992 * 110.03179 * 238.56788 * 19 15 14 48 48 H 1.09003 * 110.02999 * 0.02562 * 19 15 14 49 49 H 1.09004 * 110.24223 * 223.98819 * 20 14 12 50 50 H 1.08999 * 110.24603 * 101.98820 * 20 14 12 51 51 H 0.97003 * 120.00120 * 95.00139 * 21 3 2 52 52 H 0.97006 * 119.99764 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0631 2.8167 -0.0059 7 6 5.3856 3.0630 -0.0868 8 8 6.1634 2.1484 -0.2583 9 6 5.8982 4.4748 0.0370 10 1 5.4299 5.1239 -0.7029 11 6 5.6811 5.0189 1.4681 12 6 6.9787 4.7115 2.1825 13 8 7.1276 4.7189 3.3861 14 7 7.9427 4.4290 1.2893 15 6 9.3205 4.0788 1.6429 16 6 9.3319 2.8353 2.5560 17 6 10.4793 3.1127 3.5599 18 6 10.3456 4.6335 3.8213 19 6 9.9651 5.2217 2.4468 20 6 7.4375 4.5169 -0.0859 21 7 1.6524 2.0975 1.2517 22 6 0.4156 2.6735 1.3688 23 1 -0.2740 2.6452 0.5381 24 6 0.0486 3.2945 2.5547 25 7 0.8891 3.3293 3.5669 26 14 -1.6389 4.0796 2.7145 27 1 -2.6047 3.0765 3.2305 28 1 -1.5646 5.2253 3.6562 29 1 -2.0888 4.5610 1.3838 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9953 0.8311 0.6659 36 1 3.8499 1.0376 -1.0960 37 1 3.4409 3.5484 0.1308 38 1 5.5039 6.0940 1.4446 39 1 4.8494 4.5045 1.9496 40 1 9.8996 3.8844 0.7401 41 1 8.3814 2.7384 3.0805 42 1 9.5412 1.9373 1.9748 43 1 11.4465 2.8811 3.1138 44 1 10.3354 2.5483 4.4812 45 1 11.2945 5.0467 4.1634 46 1 9.5589 4.8276 4.5503 47 1 10.8574 5.5814 1.9346 48 1 9.2525 6.0367 2.5741 49 1 7.7923 3.6697 -0.6729 50 1 7.7538 5.4536 -0.5448 51 1 2.2719 2.1232 1.9977 52 1 0.6325 3.7630 4.3958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318604296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:00 Heat of formation + Delta-G solvation = -74.595601 kcal Electronic energy + Delta-G solvation = -30690.871598 eV Core-core repulsion = 26689.704772 eV Total energy + Delta-G solvation = -4001.166826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.99760 -39.21993 -37.39698 -36.82584 -35.87389 -33.80577 -32.48448 -32.02707 -29.78290 -28.76686 -28.26426 -27.65546 -27.24381 -24.18397 -23.15539 -22.03511 -21.49268 -20.71698 -20.21633 -19.61075 -18.71029 -17.69257 -17.10486 -16.87999 -15.96324 -15.60564 -15.52163 -15.12978 -14.91713 -14.66849 -14.26093 -14.04906 -13.80983 -13.61883 -13.30422 -13.27791 -13.21464 -12.99722 -12.84726 -12.43347 -12.08122 -11.83693 -11.71889 -11.64523 -11.46600 -11.42084 -11.18723 -11.10287 -10.98553 -10.92318 -10.91646 -10.75865 -10.60613 -10.45907 -10.23065 -10.04541 -9.62575 -9.55297 -9.53118 -8.98205 -8.70856 -8.63674 -7.06408 -5.83105 -3.13188 2.69274 2.78289 2.98358 3.37774 3.41611 3.44130 3.46211 4.25599 4.31553 4.51981 4.53571 4.59986 4.73003 4.80593 4.94698 5.21695 5.25717 5.33410 5.36878 5.38474 5.41854 5.44883 5.48659 5.53256 5.56462 5.61397 5.70836 5.76349 5.85314 5.88142 5.88572 5.93011 5.93195 5.94484 6.10659 6.12154 6.17617 6.35025 6.39266 6.50451 6.54294 6.57599 6.70536 6.83481 6.98970 7.17769 7.21614 7.64173 7.83754 8.29268 8.33460 8.45931 9.45564 9.99932 10.35709 11.38289 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.003000 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.695956 B = 9330.970241 C =10339.421497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.164 3.836 4 H 0.054 0.946 5 C 0.115 3.885 6 N -0.707 5.707 7 C 0.517 3.483 8 O -0.547 6.547 9 C -0.125 4.125 10 H 0.122 0.878 11 C -0.149 4.149 12 C 0.520 3.480 13 O -0.521 6.521 14 N -0.612 5.612 15 C 0.157 3.843 16 C -0.134 4.134 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.130 4.130 20 C 0.118 3.882 21 N -0.721 5.721 22 C -0.240 4.240 23 H 0.073 0.927 24 C -0.009 4.009 25 N -0.926 5.926 26 Si 0.902 3.098 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.032 0.968 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.411 0.589 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.094 0.906 50 H 0.076 0.924 51 H 0.385 0.615 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.139 3.156 -8.888 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.358 5.358 7 C 0.302 3.698 8 O -0.425 6.425 9 C -0.147 4.147 10 H 0.140 0.860 11 C -0.189 4.189 12 C 0.307 3.693 13 O -0.396 6.396 14 N -0.346 5.346 15 C 0.055 3.945 16 C -0.172 4.172 17 C -0.158 4.158 18 C -0.158 4.158 19 C -0.168 4.168 20 C -0.005 4.005 21 N -0.364 5.364 22 C -0.371 4.371 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.574 5.574 26 Si 0.733 3.267 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.248 0.752 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.112 0.888 50 H 0.094 0.906 51 H 0.219 0.781 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.653 2.570 -8.374 18.816 hybrid contribution -1.250 0.698 0.357 1.476 sum 15.403 3.268 -8.017 17.669 Atomic orbital electron populations 1.21770 0.95707 0.99644 1.03244 1.22074 0.96995 0.98441 0.99994 1.20557 0.89838 0.92812 0.91475 0.92839 1.21685 0.95716 0.82507 1.01054 1.45935 1.06935 1.10960 1.72004 1.20138 0.82732 0.90243 0.76702 1.90670 1.55999 1.46019 1.49838 1.22290 0.96974 0.95933 0.99495 0.86016 1.22418 0.98362 1.04306 0.93820 1.20734 0.86013 0.75866 0.86645 1.90716 1.83624 1.51931 1.13344 1.48365 1.10123 1.69077 1.07042 1.21608 0.80490 0.94368 0.98049 1.22728 1.00336 0.96829 0.97347 1.22419 0.97882 0.96377 0.99109 1.22291 1.01079 0.95183 0.97202 1.22476 1.00099 0.98036 0.96231 1.21967 0.91640 1.02871 0.84042 1.42461 1.16799 1.65865 1.11257 1.19173 0.91981 1.27927 0.98028 0.90950 1.24732 0.97945 1.01502 0.96384 1.69656 1.35068 1.48711 1.03968 0.86286 0.84313 0.78822 0.77306 1.21785 1.21835 1.20802 0.89646 0.94124 0.94890 0.93898 0.92554 0.91886 0.91836 0.75199 0.86870 0.86637 0.89260 0.90164 0.91430 0.91759 0.91472 0.92102 0.90734 0.91570 0.91227 0.88785 0.90624 0.78095 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.18 37.16 0.34 -2.21 16 2 C -0.13 -2.26 5.61 -26.73 -0.15 -2.41 16 3 C 0.16 2.89 2.59 -67.93 -0.18 2.72 16 4 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 5 C 0.11 1.85 5.23 -4.04 -0.02 1.83 16 6 N -0.71 -10.72 5.31 -60.29 -0.32 -11.04 16 7 C 0.52 7.59 7.08 -10.99 -0.08 7.51 16 8 O -0.55 -9.63 15.53 5.56 0.09 -9.55 16 9 C -0.13 -1.37 3.54 -90.14 -0.32 -1.69 16 10 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.15 -1.89 6.40 -26.74 -0.17 -2.06 16 12 C 0.52 7.84 6.83 -10.86 -0.07 7.77 16 13 O -0.52 -9.68 15.90 5.56 0.09 -9.60 16 14 N -0.61 -7.59 2.83 -163.57 -0.46 -8.05 16 15 C 0.16 1.77 3.54 -66.81 -0.24 1.53 16 16 C -0.13 -1.68 6.30 -25.03 -0.16 -1.84 16 17 C -0.12 -1.26 6.91 -24.70 -0.17 -1.43 16 18 C -0.12 -1.30 6.83 -25.07 -0.17 -1.47 16 19 C -0.13 -1.37 6.00 -25.61 -0.15 -1.52 16 20 C 0.12 1.20 6.64 -3.12 -0.02 1.18 16 21 N -0.72 -15.91 4.51 -53.43 -0.24 -16.15 16 22 C -0.24 -5.92 7.75 -15.06 -0.12 -6.04 16 23 H 0.07 1.75 7.32 -52.49 -0.38 1.37 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -26.35 13.06 55.49 0.72 -25.63 16 26 Si 0.90 21.18 29.55 -169.99 -5.02 16.16 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 30 H 0.08 1.77 5.99 -51.93 -0.31 1.46 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.41 6.25 8.14 -40.82 -0.33 5.92 16 38 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.12 1.76 7.84 -51.93 -0.41 1.36 16 40 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 41 H 0.08 1.29 6.51 -51.93 -0.34 0.95 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.98 8.05 -51.93 -0.42 0.57 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.84 7.32 -51.93 -0.38 0.46 16 49 H 0.09 1.03 7.02 -51.93 -0.36 0.67 16 50 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.38 9.42 7.80 -40.82 -0.32 9.10 16 52 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 408.41 15.07 6.15 6.15 Total: -1.00 -30.98 408.41 -9.91 -40.89 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -9.15 Total: 15.25 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.77 Total: 1.55 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.30 Total: -60.86 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.17 Total: -19.14 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.98 -9.91 -40.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318604296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.706 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds