Wall clock time and date at job start Tue Mar 31 2020 20:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46989 * 2 1 4 4 H 1.08997 * 109.46828 * 304.99870 * 3 2 1 5 5 C 1.53006 * 109.46811 * 184.99907 * 3 2 1 6 6 N 1.46500 * 109.46998 * 184.99974 * 5 3 2 7 7 C 1.34769 * 120.00237 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99854 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00461 * 180.02562 * 7 6 5 10 10 H 1.09002 * 110.85413 * 303.78913 * 9 7 6 11 11 C 1.54635 * 110.96851 * 67.61505 * 9 7 6 12 12 C 1.51283 * 104.19066 * 93.32332 * 11 9 7 13 13 O 1.21277 * 124.93891 * 196.25230 * 12 11 9 14 14 N 1.34418 * 110.11958 * 16.25533 * 12 11 9 15 15 C 1.46495 * 124.35362 * 180.38539 * 14 12 11 16 16 C 1.54271 * 110.03141 * 57.92605 * 15 14 12 17 17 C 1.54960 * 104.16121 * 217.13856 * 16 15 14 18 18 C 1.54889 * 102.77828 * 37.89092 * 17 16 15 19 19 C 1.53881 * 110.03143 * 300.71137 * 15 14 12 20 20 C 1.46768 * 111.29784 * 0.40520 * 14 12 11 21 21 N 1.46493 * 109.47168 * 64.99987 * 3 2 1 22 22 C 1.36940 * 120.00317 * 274.99962 * 21 3 2 23 23 H 1.07999 * 119.99727 * 359.97438 * 22 21 3 24 24 C 1.38806 * 120.00128 * 180.02562 * 22 21 3 25 25 N 1.31615 * 120.00100 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99731 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47463 * 89.99524 * 26 24 22 28 28 H 1.48497 * 109.47178 * 209.99762 * 26 24 22 29 29 H 1.48495 * 109.46984 * 329.99589 * 26 24 22 30 30 H 1.08995 * 109.47199 * 300.00210 * 1 2 3 31 31 H 1.09004 * 109.46840 * 60.00285 * 1 2 3 32 32 H 1.09007 * 109.47278 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47020 * 240.00118 * 2 1 3 34 34 H 1.08996 * 109.46961 * 119.99940 * 2 1 3 35 35 H 1.08993 * 109.46955 * 305.00200 * 5 3 2 36 36 H 1.09000 * 109.47050 * 65.00029 * 5 3 2 37 37 H 0.97010 * 119.99909 * 359.97438 * 6 5 3 38 38 H 1.08995 * 110.48852 * 212.00354 * 11 9 7 39 39 H 1.09004 * 110.48376 * 334.64953 * 11 9 7 40 40 H 1.09004 * 110.02153 * 179.32053 * 15 14 12 41 41 H 1.08996 * 110.48729 * 335.79246 * 16 15 14 42 42 H 1.09004 * 110.47983 * 98.42815 * 16 15 14 43 43 H 1.09001 * 110.72059 * 279.57792 * 17 16 15 44 44 H 1.08998 * 110.92366 * 156.30107 * 17 16 15 45 45 H 1.09001 * 110.48769 * 203.41033 * 18 17 16 46 46 H 1.08994 * 110.48867 * 80.76075 * 18 17 16 47 47 H 1.08992 * 110.03179 * 238.56788 * 19 15 14 48 48 H 1.09003 * 110.02999 * 0.02562 * 19 15 14 49 49 H 1.09004 * 110.24223 * 223.98819 * 20 14 12 50 50 H 1.08999 * 110.24603 * 101.98820 * 20 14 12 51 51 H 0.97003 * 120.00120 * 95.00139 * 21 3 2 52 52 H 0.97006 * 119.99764 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0631 2.8167 -0.0059 7 6 5.3856 3.0630 -0.0868 8 8 6.1634 2.1484 -0.2583 9 6 5.8982 4.4748 0.0370 10 1 5.4299 5.1239 -0.7029 11 6 5.6811 5.0189 1.4681 12 6 6.9787 4.7115 2.1825 13 8 7.1276 4.7189 3.3861 14 7 7.9427 4.4290 1.2893 15 6 9.3205 4.0788 1.6429 16 6 9.3319 2.8353 2.5560 17 6 10.4793 3.1127 3.5599 18 6 10.3456 4.6335 3.8213 19 6 9.9651 5.2217 2.4468 20 6 7.4375 4.5169 -0.0859 21 7 1.6524 2.0975 1.2517 22 6 0.4156 2.6735 1.3688 23 1 -0.2740 2.6452 0.5381 24 6 0.0486 3.2945 2.5547 25 7 0.8891 3.3293 3.5669 26 14 -1.6389 4.0796 2.7145 27 1 -2.6047 3.0765 3.2305 28 1 -1.5646 5.2253 3.6562 29 1 -2.0888 4.5610 1.3838 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9953 0.8311 0.6659 36 1 3.8499 1.0376 -1.0960 37 1 3.4409 3.5484 0.1308 38 1 5.5039 6.0940 1.4446 39 1 4.8494 4.5045 1.9496 40 1 9.8996 3.8844 0.7401 41 1 8.3814 2.7384 3.0805 42 1 9.5412 1.9373 1.9748 43 1 11.4465 2.8811 3.1138 44 1 10.3354 2.5483 4.4812 45 1 11.2945 5.0467 4.1634 46 1 9.5589 4.8276 4.5503 47 1 10.8574 5.5814 1.9346 48 1 9.2525 6.0367 2.5741 49 1 7.7923 3.6697 -0.6729 50 1 7.7538 5.4536 -0.5448 51 1 2.2719 2.1232 1.9977 52 1 0.6325 3.7630 4.3958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318604296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:59 Heat of formation + Delta-G solvation = -94.802096 kcal Electronic energy + Delta-G solvation = -30691.747817 eV Core-core repulsion = 26689.704772 eV Total energy + Delta-G solvation = -4002.043045 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.04863 -40.41046 -38.43899 -38.25649 -37.03392 -35.24393 -34.16866 -33.06579 -31.48488 -29.67025 -29.64103 -28.64441 -28.30255 -25.76403 -24.63625 -23.25659 -22.47549 -21.64301 -21.58354 -20.85736 -19.75406 -19.26058 -18.46564 -17.91384 -17.11561 -16.97233 -16.67289 -16.42295 -16.06683 -15.92109 -15.64491 -15.29588 -15.20820 -14.74485 -14.70961 -14.53570 -14.29503 -14.14200 -14.11699 -13.84860 -13.34214 -12.96636 -12.91563 -12.80062 -12.75941 -12.66344 -12.57119 -12.35543 -12.28030 -12.08519 -12.05980 -11.98038 -11.87942 -11.86432 -11.61307 -11.48088 -11.32804 -10.94954 -10.77559 -10.67168 -9.98977 -9.62568 -8.96473 -7.85590 -5.13209 1.50575 1.52305 1.55378 1.59337 1.61611 2.04605 2.27569 2.61142 3.30437 3.37935 3.48239 3.65318 3.68309 3.72623 3.86484 3.92810 3.97620 4.02503 4.36289 4.38528 4.40587 4.47118 4.49159 4.50653 4.57077 4.57469 4.61673 4.68582 4.74504 4.76134 4.83759 4.88308 4.90210 4.91014 4.97583 5.08043 5.10885 5.14108 5.18476 5.21657 5.24959 5.45801 5.49495 5.59060 5.63303 5.72575 5.76111 6.16430 6.33406 6.61680 7.19110 7.25953 7.41594 8.13676 8.37919 9.36868 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.003000 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.695956 B = 9330.970241 C =10339.421497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.165 3.835 4 H 0.064 0.936 5 C 0.123 3.877 6 N -0.708 5.708 7 C 0.512 3.488 8 O -0.578 6.578 9 C -0.113 4.113 10 H 0.167 0.833 11 C -0.144 4.144 12 C 0.505 3.495 13 O -0.571 6.571 14 N -0.607 5.607 15 C 0.150 3.850 16 C -0.138 4.138 17 C -0.114 4.114 18 C -0.121 4.121 19 C -0.124 4.124 20 C 0.118 3.882 21 N -0.728 5.728 22 C -0.213 4.213 23 H 0.082 0.918 24 C -0.072 4.072 25 N -0.968 5.968 26 Si 0.957 3.043 27 H -0.298 1.298 28 H -0.304 1.304 29 H -0.265 1.265 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.412 0.588 38 H 0.142 0.858 39 H 0.083 0.917 40 H 0.121 0.879 41 H 0.033 0.967 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.057 0.943 45 H 0.084 0.916 46 H 0.038 0.962 47 H 0.098 0.902 48 H 0.049 0.951 49 H 0.091 0.909 50 H 0.120 0.880 51 H 0.370 0.630 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.246 3.896 -12.438 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.057 3.943 4 H 0.082 0.918 5 C -0.001 4.001 6 N -0.359 5.359 7 C 0.299 3.701 8 O -0.459 6.459 9 C -0.134 4.134 10 H 0.184 0.816 11 C -0.184 4.184 12 C 0.293 3.707 13 O -0.450 6.450 14 N -0.340 5.340 15 C 0.048 3.952 16 C -0.176 4.176 17 C -0.152 4.152 18 C -0.158 4.158 19 C -0.162 4.162 20 C -0.004 4.004 21 N -0.368 5.368 22 C -0.345 4.345 23 H 0.100 0.900 24 C -0.264 4.264 25 N -0.619 5.619 26 Si 0.788 3.212 27 H -0.225 1.225 28 H -0.232 1.232 29 H -0.190 1.190 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.249 0.751 38 H 0.160 0.840 39 H 0.101 0.899 40 H 0.138 0.862 41 H 0.052 0.948 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.076 0.924 45 H 0.102 0.898 46 H 0.057 0.943 47 H 0.117 0.883 48 H 0.068 0.932 49 H 0.109 0.891 50 H 0.138 0.862 51 H 0.202 0.798 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.754 3.292 -12.022 21.693 hybrid contribution -1.566 0.333 1.378 2.112 sum 16.189 3.625 -10.644 19.711 Atomic orbital electron populations 1.21698 0.95917 1.00538 1.01873 1.22006 0.96700 0.97629 1.00836 1.20717 0.90951 0.93095 0.89569 0.91800 1.21527 0.94334 0.83081 1.01189 1.45951 1.07442 1.10476 1.72012 1.20821 0.82081 0.91679 0.75500 1.90655 1.56529 1.47465 1.51217 1.22381 0.97998 0.93794 0.99208 0.81592 1.22376 0.95960 1.05748 0.94363 1.21214 0.87425 0.75656 0.86402 1.90685 1.84556 1.54283 1.15497 1.48508 1.10244 1.67538 1.07720 1.21861 0.80350 0.93863 0.99122 1.22707 0.98879 0.98067 0.97965 1.22422 0.98363 0.95997 0.98411 1.22275 1.00960 0.95679 0.96933 1.22454 1.00772 0.96982 0.95972 1.22239 0.90626 1.04970 0.82596 1.42601 1.15786 1.66080 1.12361 1.19484 0.92458 1.25128 0.97457 0.90009 1.25360 1.00774 1.03596 0.96693 1.69818 1.36773 1.50998 1.04301 0.85373 0.80983 0.77349 0.77468 1.22549 1.23174 1.19010 0.93377 0.92882 0.93043 0.90593 0.94132 0.94125 0.89885 0.75130 0.84045 0.89862 0.86151 0.94759 0.91027 0.88817 0.92373 0.89772 0.94318 0.88326 0.93173 0.89111 0.86200 0.79811 0.94604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.18 71.98 0.66 -4.06 16 2 C -0.13 -4.19 5.61 30.59 0.17 -4.02 16 3 C 0.17 5.65 2.59 44.99 0.12 5.76 16 4 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 5 C 0.12 3.88 5.23 86.38 0.45 4.33 16 6 N -0.71 -20.96 5.31 -463.06 -2.46 -23.42 16 7 C 0.51 14.52 7.08 87.66 0.62 15.14 16 8 O -0.58 -19.99 15.53 -3.04 -0.05 -20.04 16 9 C -0.11 -2.19 3.54 -10.48 -0.04 -2.23 16 10 H 0.17 1.81 8.14 -2.39 -0.02 1.79 16 11 C -0.14 -3.61 6.40 30.59 0.20 -3.41 16 12 C 0.50 15.64 6.83 87.90 0.60 16.24 16 13 O -0.57 -22.83 15.90 -3.02 -0.05 -22.88 16 14 N -0.61 -14.46 2.83 -790.01 -2.24 -16.69 16 15 C 0.15 3.17 3.54 45.72 0.16 3.33 16 16 C -0.14 -3.51 6.30 31.70 0.20 -3.31 16 17 C -0.11 -2.35 6.91 31.91 0.22 -2.13 16 18 C -0.12 -2.59 6.83 31.67 0.22 -2.38 16 19 C -0.12 -2.42 6.00 31.32 0.19 -2.23 16 20 C 0.12 2.03 6.64 86.83 0.58 2.60 16 21 N -0.73 -32.29 4.51 -322.95 -1.46 -33.74 16 22 C -0.21 -10.48 7.75 84.03 0.65 -9.83 16 23 H 0.08 3.83 7.32 -2.91 -0.02 3.81 16 24 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 25 N -0.97 -57.06 13.06 21.65 0.28 -56.78 16 26 Si 0.96 44.14 29.55 68.60 2.03 46.17 16 27 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 29 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 30 H 0.05 1.95 5.99 -2.39 -0.01 1.93 16 31 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.41 12.21 8.14 -92.70 -0.75 11.46 16 38 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.08 2.67 7.84 -2.38 -0.02 2.65 16 40 H 0.12 1.81 8.09 -2.39 -0.02 1.79 16 41 H 0.03 1.19 6.51 -2.39 -0.02 1.17 16 42 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.04 1.10 8.05 -2.39 -0.02 1.08 16 47 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.05 1.19 7.32 -2.39 -0.02 1.17 16 49 H 0.09 1.71 7.02 -2.39 -0.02 1.70 16 50 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.37 18.71 7.80 -92.71 -0.72 17.99 16 52 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 Total: -1.00 -72.45 408.41 0.96 -71.49 By element: Atomic # 1 Polarization: 46.06 SS G_CDS: -0.56 Total: 45.50 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 5.46 Total: 10.40 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -5.87 Total: -130.64 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -0.10 Total: -42.92 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -72.45 0.96 -71.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318604296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.314 kcal (2) G-P(sol) polarization free energy of solvation -72.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds