Wall clock time and date at job start Tue Mar 31 2020 19:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46995 * 2 1 4 4 H 1.09007 * 109.99690 * 308.54229 * 3 2 1 5 5 C 1.54328 * 109.88058 * 187.45092 * 3 2 1 6 6 C 1.55163 * 102.93686 * 262.77308 * 5 3 2 7 7 C 1.55125 * 101.48501 * 324.32940 * 6 5 3 8 8 H 1.08995 * 110.50052 * 278.45377 * 7 6 5 9 9 C 1.53005 * 110.33878 * 156.05977 * 7 6 5 10 10 N 1.47016 * 109.88329 * 69.63862 * 3 2 1 11 11 C 1.34775 * 125.65008 * 300.43801 * 10 3 2 12 12 O 1.21349 * 119.99955 * 163.12929 * 11 10 3 13 13 C 1.49451 * 119.99857 * 343.12562 * 11 10 3 14 14 O 1.21346 * 120.00395 * 328.19781 * 13 11 10 15 15 N 1.34783 * 119.99647 * 148.19431 * 13 11 10 16 16 C 1.46497 * 119.99584 * 179.72929 * 15 13 11 17 17 C 1.53039 * 109.45938 * 275.06404 * 16 15 13 18 18 C 1.53190 * 109.31293 * 178.61674 * 17 16 15 19 19 N 1.46923 * 108.77437 * 54.63967 * 18 17 16 20 20 C 1.36939 * 120.63251 * 126.37178 * 19 18 17 21 21 H 1.07998 * 119.99746 * 205.38834 * 20 19 18 22 22 C 1.38808 * 120.00029 * 25.38120 * 20 19 18 23 23 N 1.31623 * 120.00342 * 19.59430 * 22 20 19 24 24 Si 1.86799 * 120.00035 * 199.59442 * 22 20 19 25 25 H 1.48509 * 109.47263 * 94.99203 * 24 22 20 26 26 H 1.48499 * 109.47325 * 214.98948 * 24 22 20 27 27 H 1.48497 * 109.47205 * 334.99249 * 24 22 20 28 28 C 1.46924 * 118.73839 * 306.38816 * 19 18 17 29 29 C 1.53037 * 109.45884 * 155.00056 * 16 15 13 30 30 H 1.08999 * 109.46894 * 49.64820 * 1 2 3 31 31 H 1.08997 * 109.47077 * 169.64884 * 1 2 3 32 32 H 1.08994 * 109.47074 * 289.65282 * 1 2 3 33 33 H 1.08996 * 109.47091 * 240.00095 * 2 1 3 34 34 H 1.08998 * 109.46903 * 119.99934 * 2 1 3 35 35 H 1.08997 * 110.71911 * 21.13737 * 5 3 2 36 36 H 1.09001 * 110.72160 * 144.41030 * 5 3 2 37 37 H 1.09000 * 111.00286 * 82.57832 * 6 5 3 38 38 H 1.09000 * 110.99853 * 206.38521 * 6 5 3 39 39 H 1.08995 * 109.47058 * 299.52721 * 9 7 6 40 40 H 1.09002 * 109.47174 * 59.52646 * 9 7 6 41 41 H 1.09008 * 109.47017 * 179.52600 * 9 7 6 42 42 H 0.96999 * 119.99663 * 359.97438 * 15 13 11 43 43 H 1.08996 * 109.46616 * 35.02482 * 16 15 13 44 44 H 1.09002 * 109.50185 * 298.57373 * 17 16 15 45 45 H 1.09003 * 109.49723 * 58.66772 * 17 16 15 46 46 H 1.08998 * 109.58925 * 294.84573 * 18 17 16 47 47 H 1.09011 * 109.58483 * 174.42355 * 18 17 16 48 48 H 0.96990 * 120.00515 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.58729 * 293.82202 * 28 19 18 50 50 H 1.09000 * 109.58827 * 173.39745 * 28 19 18 51 51 H 1.09001 * 109.50076 * 301.33295 * 29 16 15 52 52 H 1.08997 * 109.49926 * 61.39749 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5625 2.0067 -0.8012 5 6 3.5717 1.4577 -0.1882 6 6 4.0990 1.5863 1.2654 7 6 3.0252 2.5063 1.9032 8 1 3.2253 3.5504 1.6624 9 6 2.9865 2.3064 3.4197 10 7 1.7531 2.0743 1.2961 11 6 0.5294 2.2368 1.8370 12 8 0.4168 2.4838 3.0198 13 6 -0.6887 2.1131 0.9802 14 8 -0.6443 2.4378 -0.1882 15 7 -1.8367 1.6407 1.5052 16 6 -3.0324 1.5249 0.6667 17 6 -3.7673 2.8670 0.6386 18 6 -4.9978 2.7520 -0.2665 19 7 -5.8192 1.6239 0.1932 20 6 -7.1475 1.7980 0.4771 21 1 -7.6422 1.1365 1.1729 22 6 -7.8580 2.8248 -0.1291 23 7 -7.4018 3.3788 -1.2325 24 14 -9.4618 3.4205 0.6208 25 1 -9.1958 4.5949 1.4900 26 1 -10.4007 3.8087 -0.4622 27 1 -10.0640 2.3314 1.4311 28 6 -5.1883 0.3055 0.3429 29 6 -3.9556 0.4479 1.2411 30 1 -0.3633 0.6654 -0.7832 31 1 -0.3633 -1.0109 -0.1846 32 1 -0.3633 0.3456 0.9678 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9137 0.5274 -0.6417 36 1 3.8782 2.3153 -0.7870 37 1 4.1282 0.6143 1.7578 38 1 5.0800 2.0611 1.2844 39 1 2.7346 1.2698 3.6431 40 1 3.9631 2.5422 3.8424 41 1 2.2340 2.9649 3.8538 42 1 -1.8721 1.3807 2.4390 43 1 -2.7402 1.2499 -0.3467 44 1 -4.0817 3.1309 1.6484 45 1 -3.1015 3.6383 0.2512 46 1 -4.6803 2.5778 -1.2946 47 1 -5.5787 3.6729 -0.2124 48 1 -7.8984 4.0961 -1.6563 49 1 -4.8863 -0.0683 -0.6355 50 1 -5.8947 -0.3880 0.7991 51 1 -3.4239 -0.5027 1.2826 52 1 -4.2678 0.7342 2.2454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322825772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:57 Heat of formation + Delta-G solvation = -25.457936 kcal Electronic energy + Delta-G solvation = -31482.831043 eV Core-core repulsion = 27483.794986 eV Total energy + Delta-G solvation = -3999.036057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.44383 -39.40251 -37.90129 -37.37010 -34.54672 -33.95860 -32.18791 -31.93928 -30.48457 -30.12680 -29.55615 -26.45272 -25.58801 -24.44891 -22.90784 -22.40729 -22.25979 -21.32987 -20.91715 -19.82832 -19.00970 -17.59503 -17.18363 -16.71497 -16.31201 -15.95682 -15.43054 -14.80816 -14.49468 -14.39098 -14.30776 -13.96495 -13.72954 -13.63027 -13.53629 -13.46950 -13.31566 -13.02354 -12.67522 -12.53230 -12.43812 -12.32039 -12.08843 -11.54073 -11.52194 -11.42348 -11.25310 -11.09446 -10.96592 -10.91019 -10.79805 -10.77469 -10.73270 -10.38926 -10.23809 -10.04665 -9.75413 -9.69594 -9.31575 -8.87020 -8.71594 -8.41834 -6.73634 -5.79161 -3.18952 1.57589 2.27525 3.09603 3.38706 3.46132 3.46346 3.47401 4.15929 4.19066 4.47632 4.49957 4.54312 4.63961 4.89741 4.93168 5.08216 5.10288 5.23592 5.25452 5.34398 5.37469 5.41687 5.43162 5.48247 5.56087 5.58813 5.62430 5.75804 5.78442 5.84826 5.86616 5.92240 5.98564 6.03543 6.18154 6.22721 6.24326 6.33565 6.39279 6.55750 6.63214 6.73619 6.81128 6.90007 7.10688 7.34827 7.40393 7.66908 7.75170 7.79841 8.12135 8.42920 9.19912 9.84083 10.38971 11.29440 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025597 B = 0.002615 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.633982 B =10706.783945 C =10973.333272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.130 4.130 3 C 0.124 3.876 4 H 0.098 0.902 5 C -0.129 4.129 6 C -0.129 4.129 7 C 0.131 3.869 8 H 0.079 0.921 9 C -0.158 4.158 10 N -0.593 5.593 11 C 0.525 3.475 12 O -0.516 6.516 13 C 0.522 3.478 14 O -0.518 6.518 15 N -0.706 5.706 16 C 0.152 3.848 17 C -0.148 4.148 18 C 0.173 3.827 19 N -0.593 5.593 20 C -0.253 4.253 21 H 0.068 0.932 22 C 0.001 3.999 23 N -0.900 5.900 24 Si 0.901 3.099 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.150 3.850 29 C -0.139 4.139 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.403 0.597 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.020 0.980 47 H 0.093 0.907 48 H 0.254 0.746 49 H 0.021 0.979 50 H 0.059 0.941 51 H 0.056 0.944 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.497 -6.034 4.393 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.169 4.169 3 C 0.021 3.979 4 H 0.115 0.885 5 C -0.167 4.167 6 C -0.167 4.167 7 C 0.029 3.971 8 H 0.097 0.903 9 C -0.215 4.215 10 N -0.329 5.329 11 C 0.309 3.691 12 O -0.391 6.391 13 C 0.305 3.695 14 O -0.395 6.395 15 N -0.357 5.357 16 C 0.049 3.951 17 C -0.189 4.189 18 C 0.046 3.954 19 N -0.315 5.315 20 C -0.383 4.383 21 H 0.085 0.915 22 C -0.197 4.197 23 N -0.545 5.545 24 Si 0.731 3.269 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.022 3.978 29 C -0.179 4.179 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.238 0.762 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.039 0.961 47 H 0.111 0.889 48 H 0.064 0.936 49 H 0.039 0.961 50 H 0.078 0.922 51 H 0.075 0.925 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 24.260 -5.531 4.119 25.221 hybrid contribution -0.781 0.256 0.777 1.131 sum 23.479 -5.275 4.895 24.557 Atomic orbital electron populations 1.23095 0.95456 1.03495 1.02681 1.21938 0.96959 0.95473 1.02491 1.21955 0.95977 0.94083 0.85888 0.88457 1.22717 0.93398 1.03383 0.97161 1.22904 0.98015 1.00283 0.95533 1.22104 0.82230 0.98317 0.94437 0.90295 1.22161 1.02351 1.03395 0.93623 1.48322 1.04844 1.58447 1.21285 1.20219 0.83832 0.77740 0.87345 1.90732 1.86059 1.47573 1.14747 1.19508 0.84341 0.78024 0.87624 1.90730 1.84679 1.48554 1.15545 1.46373 1.10372 1.63780 1.15216 1.21164 0.82323 0.97162 0.94404 1.22597 0.99067 0.95154 1.02054 1.20795 0.88360 0.93544 0.92685 1.44142 1.06546 1.02669 1.78183 1.19212 0.85475 1.14429 1.19161 0.91452 1.24982 0.97913 1.01277 0.95571 1.70054 1.40094 1.27563 1.16780 0.86286 0.83179 0.78976 0.78426 1.21496 1.21821 1.20404 1.20824 0.92048 0.89267 0.95616 1.22355 0.97717 0.96654 1.01214 0.89089 0.92589 0.91946 0.90441 0.91860 0.89680 0.90234 0.90377 0.89740 0.92380 0.92196 0.90030 0.76199 0.89610 0.92424 0.92772 0.96139 0.88929 0.93591 0.96147 0.92246 0.92502 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.23 7.85 37.16 0.29 -1.94 16 2 C -0.13 -1.21 5.44 -26.73 -0.15 -1.35 16 3 C 0.12 1.19 2.72 -66.95 -0.18 1.01 16 4 H 0.10 1.11 6.88 -51.92 -0.36 0.75 16 5 C -0.13 -0.82 6.49 -24.89 -0.16 -0.98 16 6 C -0.13 -0.80 6.51 -24.46 -0.16 -0.95 16 7 C 0.13 1.18 3.83 -66.30 -0.25 0.93 16 8 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 9 C -0.16 -1.47 8.32 37.16 0.31 -1.16 16 10 N -0.59 -6.74 2.99 -155.97 -0.47 -7.21 16 11 C 0.53 7.40 6.70 -11.59 -0.08 7.32 16 12 O -0.52 -8.04 14.37 5.50 0.08 -7.96 16 13 C 0.52 7.92 4.00 -11.58 -0.05 7.87 16 14 O -0.52 -8.82 12.41 5.50 0.07 -8.75 16 15 N -0.71 -10.36 4.05 -54.46 -0.22 -10.58 16 16 C 0.15 2.57 2.42 -67.89 -0.16 2.41 16 17 C -0.15 -2.96 5.65 -26.61 -0.15 -3.11 16 18 C 0.17 4.16 5.35 -3.71 -0.02 4.14 16 19 N -0.59 -14.62 3.00 -172.32 -0.52 -15.14 16 20 C -0.25 -6.88 9.60 -15.06 -0.14 -7.03 16 21 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 22 C 0.00 0.03 4.87 -17.43 -0.08 -0.05 16 23 N -0.90 -26.19 11.16 55.49 0.62 -25.57 16 24 Si 0.90 21.71 29.60 -169.99 -5.03 16.68 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 C 0.15 3.01 6.52 -3.71 -0.02 2.98 16 29 C -0.14 -2.27 5.55 -26.61 -0.15 -2.42 16 30 H 0.09 1.27 5.56 -51.93 -0.29 0.98 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.79 3.56 -52.48 -0.19 0.61 16 33 H 0.08 0.59 8.02 -51.93 -0.42 0.18 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.43 7.75 -51.93 -0.40 0.03 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.96 6.28 -51.92 -0.33 0.64 16 42 H 0.40 5.36 8.40 -40.82 -0.34 5.01 16 43 H 0.09 1.56 7.57 -51.93 -0.39 1.16 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 2.51 5.93 -51.92 -0.31 2.21 16 48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.06 1.16 7.92 -51.93 -0.41 0.74 16 51 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 388.69 15.07 5.86 5.86 Total: -1.00 -30.94 388.69 -9.67 -40.61 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -8.90 Total: 4.41 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -1.16 Total: 7.65 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.59 Total: -58.50 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.15 Total: -16.71 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.94 -9.67 -40.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322825772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.152 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds