Wall clock time and date at job start Tue Mar 31 2020 19:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46995 * 2 1 4 4 H 1.09007 * 109.99690 * 308.54229 * 3 2 1 5 5 C 1.54328 * 109.88058 * 187.45092 * 3 2 1 6 6 C 1.55163 * 102.93686 * 262.77308 * 5 3 2 7 7 C 1.55125 * 101.48501 * 324.32940 * 6 5 3 8 8 H 1.08995 * 110.50052 * 278.45377 * 7 6 5 9 9 C 1.53005 * 110.33878 * 156.05977 * 7 6 5 10 10 N 1.47016 * 109.88329 * 69.63862 * 3 2 1 11 11 C 1.34775 * 125.65008 * 300.43801 * 10 3 2 12 12 O 1.21349 * 119.99955 * 163.12929 * 11 10 3 13 13 C 1.49451 * 119.99857 * 343.12562 * 11 10 3 14 14 O 1.21346 * 120.00395 * 328.19781 * 13 11 10 15 15 N 1.34783 * 119.99647 * 148.19431 * 13 11 10 16 16 C 1.46497 * 119.99584 * 179.72929 * 15 13 11 17 17 C 1.53039 * 109.45938 * 275.06404 * 16 15 13 18 18 C 1.53190 * 109.31293 * 178.61674 * 17 16 15 19 19 N 1.46923 * 108.77437 * 54.63967 * 18 17 16 20 20 C 1.36939 * 120.63251 * 126.37178 * 19 18 17 21 21 H 1.07998 * 119.99746 * 205.38834 * 20 19 18 22 22 C 1.38808 * 120.00029 * 25.38120 * 20 19 18 23 23 N 1.31623 * 120.00342 * 19.59430 * 22 20 19 24 24 Si 1.86799 * 120.00035 * 199.59442 * 22 20 19 25 25 H 1.48509 * 109.47263 * 94.99203 * 24 22 20 26 26 H 1.48499 * 109.47325 * 214.98948 * 24 22 20 27 27 H 1.48497 * 109.47205 * 334.99249 * 24 22 20 28 28 C 1.46924 * 118.73839 * 306.38816 * 19 18 17 29 29 C 1.53037 * 109.45884 * 155.00056 * 16 15 13 30 30 H 1.08999 * 109.46894 * 49.64820 * 1 2 3 31 31 H 1.08997 * 109.47077 * 169.64884 * 1 2 3 32 32 H 1.08994 * 109.47074 * 289.65282 * 1 2 3 33 33 H 1.08996 * 109.47091 * 240.00095 * 2 1 3 34 34 H 1.08998 * 109.46903 * 119.99934 * 2 1 3 35 35 H 1.08997 * 110.71911 * 21.13737 * 5 3 2 36 36 H 1.09001 * 110.72160 * 144.41030 * 5 3 2 37 37 H 1.09000 * 111.00286 * 82.57832 * 6 5 3 38 38 H 1.09000 * 110.99853 * 206.38521 * 6 5 3 39 39 H 1.08995 * 109.47058 * 299.52721 * 9 7 6 40 40 H 1.09002 * 109.47174 * 59.52646 * 9 7 6 41 41 H 1.09008 * 109.47017 * 179.52600 * 9 7 6 42 42 H 0.96999 * 119.99663 * 359.97438 * 15 13 11 43 43 H 1.08996 * 109.46616 * 35.02482 * 16 15 13 44 44 H 1.09002 * 109.50185 * 298.57373 * 17 16 15 45 45 H 1.09003 * 109.49723 * 58.66772 * 17 16 15 46 46 H 1.08998 * 109.58925 * 294.84573 * 18 17 16 47 47 H 1.09011 * 109.58483 * 174.42355 * 18 17 16 48 48 H 0.96990 * 120.00515 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.58729 * 293.82202 * 28 19 18 50 50 H 1.09000 * 109.58827 * 173.39745 * 28 19 18 51 51 H 1.09001 * 109.50076 * 301.33295 * 29 16 15 52 52 H 1.08997 * 109.49926 * 61.39749 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5625 2.0067 -0.8012 5 6 3.5717 1.4577 -0.1882 6 6 4.0990 1.5863 1.2654 7 6 3.0252 2.5063 1.9032 8 1 3.2253 3.5504 1.6624 9 6 2.9865 2.3064 3.4197 10 7 1.7531 2.0743 1.2961 11 6 0.5294 2.2368 1.8370 12 8 0.4168 2.4838 3.0198 13 6 -0.6887 2.1131 0.9802 14 8 -0.6443 2.4378 -0.1882 15 7 -1.8367 1.6407 1.5052 16 6 -3.0324 1.5249 0.6667 17 6 -3.7673 2.8670 0.6386 18 6 -4.9978 2.7520 -0.2665 19 7 -5.8192 1.6239 0.1932 20 6 -7.1475 1.7980 0.4771 21 1 -7.6422 1.1365 1.1729 22 6 -7.8580 2.8248 -0.1291 23 7 -7.4018 3.3788 -1.2325 24 14 -9.4618 3.4205 0.6208 25 1 -9.1958 4.5949 1.4900 26 1 -10.4007 3.8087 -0.4622 27 1 -10.0640 2.3314 1.4311 28 6 -5.1883 0.3055 0.3429 29 6 -3.9556 0.4479 1.2411 30 1 -0.3633 0.6654 -0.7832 31 1 -0.3633 -1.0109 -0.1846 32 1 -0.3633 0.3456 0.9678 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9137 0.5274 -0.6417 36 1 3.8782 2.3153 -0.7870 37 1 4.1282 0.6143 1.7578 38 1 5.0800 2.0611 1.2844 39 1 2.7346 1.2698 3.6431 40 1 3.9631 2.5422 3.8424 41 1 2.2340 2.9649 3.8538 42 1 -1.8721 1.3807 2.4390 43 1 -2.7402 1.2499 -0.3467 44 1 -4.0817 3.1309 1.6484 45 1 -3.1015 3.6383 0.2512 46 1 -4.6803 2.5778 -1.2946 47 1 -5.5787 3.6729 -0.2124 48 1 -7.8984 4.0961 -1.6563 49 1 -4.8863 -0.0683 -0.6355 50 1 -5.8947 -0.3880 0.7991 51 1 -3.4239 -0.5027 1.2826 52 1 -4.2678 0.7342 2.2454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322825772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:56 Heat of formation + Delta-G solvation = -44.670139 kcal Electronic energy + Delta-G solvation = -31483.664147 eV Core-core repulsion = 27483.794986 eV Total energy + Delta-G solvation = -3999.869161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.49873 -40.51106 -38.99264 -38.84277 -36.13260 -34.75942 -33.94794 -32.75900 -31.85608 -31.30195 -31.22042 -27.64216 -26.78375 -25.82437 -23.99973 -23.85876 -23.47543 -22.51646 -21.71468 -21.27290 -20.32052 -18.90547 -18.35608 -18.22563 -17.41310 -17.07094 -16.80433 -16.34945 -15.75288 -15.49181 -15.36985 -15.30713 -15.13888 -14.79911 -14.73625 -14.47016 -14.37800 -14.24395 -14.11705 -13.99433 -13.25012 -13.18421 -13.11530 -13.06458 -12.78404 -12.69614 -12.62278 -12.46823 -12.28660 -12.11634 -12.03250 -11.96616 -11.83687 -11.73941 -11.57380 -11.55014 -11.38566 -11.37307 -10.57903 -10.48129 -10.00583 -9.77753 -8.76007 -7.88675 -5.31012 0.43892 1.24075 1.46555 1.48805 1.57461 1.93716 2.42736 2.51072 3.23647 3.28571 3.53837 3.64966 3.70865 3.83114 3.84357 3.99121 4.02391 4.13463 4.23203 4.28629 4.36666 4.39388 4.44195 4.60565 4.63255 4.67042 4.71987 4.76083 4.81676 4.84833 4.94078 4.98091 5.01933 5.02832 5.04795 5.09966 5.13979 5.15225 5.21277 5.28887 5.30207 5.34297 5.42037 5.46554 5.49197 5.62800 5.69044 6.10761 6.25997 6.36551 6.67752 6.94019 7.12143 7.84047 8.34883 9.18473 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025597 B = 0.002615 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.633982 B =10706.783945 C =10973.333272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.124 4.124 3 C 0.115 3.885 4 H 0.075 0.925 5 C -0.120 4.120 6 C -0.117 4.117 7 C 0.120 3.880 8 H 0.082 0.918 9 C -0.151 4.151 10 N -0.589 5.589 11 C 0.523 3.477 12 O -0.537 6.537 13 C 0.523 3.477 14 O -0.540 6.540 15 N -0.698 5.698 16 C 0.167 3.833 17 C -0.134 4.134 18 C 0.183 3.817 19 N -0.610 5.610 20 C -0.260 4.260 21 H 0.074 0.926 22 C -0.055 4.055 23 N -0.936 5.936 24 Si 0.966 3.034 25 H -0.289 1.289 26 H -0.297 1.297 27 H -0.264 1.264 28 C 0.144 3.856 29 C -0.124 4.124 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.413 0.587 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.047 0.953 46 H -0.004 1.004 47 H 0.057 0.943 48 H 0.249 0.751 49 H 0.019 0.981 50 H 0.067 0.933 51 H 0.093 0.907 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.026 -7.732 5.615 28.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.162 4.162 3 C 0.013 3.987 4 H 0.093 0.907 5 C -0.158 4.158 6 C -0.155 4.155 7 C 0.019 3.981 8 H 0.100 0.900 9 C -0.209 4.209 10 N -0.323 5.323 11 C 0.306 3.694 12 O -0.415 6.415 13 C 0.307 3.693 14 O -0.418 6.418 15 N -0.350 5.350 16 C 0.063 3.937 17 C -0.175 4.175 18 C 0.056 3.944 19 N -0.333 5.333 20 C -0.390 4.390 21 H 0.092 0.908 22 C -0.250 4.250 23 N -0.582 5.582 24 Si 0.794 3.206 25 H -0.217 1.217 26 H -0.223 1.223 27 H -0.189 1.189 28 C 0.018 3.982 29 C -0.163 4.163 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.129 0.871 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.249 0.751 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.014 0.986 47 H 0.075 0.925 48 H 0.058 0.942 49 H 0.037 0.963 50 H 0.086 0.914 51 H 0.112 0.888 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 26.839 -7.267 5.360 28.318 hybrid contribution -1.508 0.762 0.341 1.724 sum 25.331 -6.505 5.701 26.767 Atomic orbital electron populations 1.23016 0.97521 1.03121 1.00969 1.21924 0.95019 0.95435 1.03867 1.22133 0.98491 0.93783 0.84319 0.90709 1.22734 0.90373 1.04963 0.97697 1.22902 0.97929 1.00004 0.94630 1.22416 0.81940 0.99385 0.94408 0.90008 1.22071 1.02810 1.02124 0.93872 1.48493 1.04719 1.57183 1.21910 1.19942 0.84313 0.78230 0.86927 1.90731 1.86406 1.49083 1.15285 1.19811 0.84830 0.77220 0.87458 1.90732 1.85085 1.49384 1.16603 1.46120 1.09578 1.63889 1.15397 1.20793 0.82986 0.95418 0.94512 1.22359 0.97414 0.97109 1.00582 1.20489 0.89336 0.92194 0.92385 1.44385 1.06219 1.04490 1.78254 1.19583 0.86567 1.14223 1.18584 0.90841 1.25756 1.01304 1.01861 0.96040 1.70209 1.41570 1.28179 1.18275 0.85269 0.79457 0.78489 0.77376 1.21652 1.22347 1.18887 1.21022 0.93534 0.87212 0.96430 1.22164 0.95965 0.98086 1.00095 0.91634 0.91839 0.92960 0.88329 0.91024 0.87489 0.89452 0.89782 0.87127 0.93132 0.89631 0.92933 0.75052 0.90762 0.92599 0.93434 0.98642 0.92473 0.94174 0.96337 0.91404 0.88828 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.24 7.85 71.98 0.56 -3.68 16 2 C -0.12 -2.03 5.44 30.60 0.17 -1.87 16 3 C 0.12 2.02 2.72 45.34 0.12 2.15 16 4 H 0.07 1.68 6.88 -2.38 -0.02 1.66 16 5 C -0.12 -1.12 6.49 31.79 0.21 -0.92 16 6 C -0.12 -0.99 6.51 32.06 0.21 -0.78 16 7 C 0.12 1.90 3.83 45.54 0.17 2.08 16 8 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 9 C -0.15 -2.57 8.32 71.98 0.60 -1.97 16 10 N -0.59 -12.70 2.99 -765.72 -2.29 -14.99 16 11 C 0.52 14.57 6.70 87.27 0.58 15.15 16 12 O -0.54 -16.71 14.37 -3.24 -0.05 -16.75 16 13 C 0.52 15.89 4.00 87.27 0.35 16.24 16 14 O -0.54 -18.79 12.41 -3.23 -0.04 -18.83 16 15 N -0.70 -20.12 4.05 -444.59 -1.80 -21.93 16 16 C 0.17 5.60 2.42 45.02 0.11 5.71 16 17 C -0.13 -5.50 5.65 30.67 0.17 -5.32 16 18 C 0.18 9.18 5.35 86.36 0.46 9.65 16 19 N -0.61 -30.58 3.00 -699.10 -2.10 -32.68 16 20 C -0.26 -14.23 9.60 84.03 0.81 -13.42 16 21 H 0.07 3.87 7.89 -2.91 -0.02 3.84 16 22 C -0.05 -3.08 4.87 84.86 0.41 -2.66 16 23 N -0.94 -56.49 11.16 21.65 0.24 -56.25 16 24 Si 0.97 45.37 29.60 68.60 2.03 47.40 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 26 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 28 C 0.14 5.68 6.52 86.36 0.56 6.24 16 29 C -0.12 -3.82 5.55 30.67 0.17 -3.65 16 30 H 0.06 1.84 5.56 -2.39 -0.01 1.82 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.28 3.56 -2.90 -0.01 1.27 16 33 H 0.10 1.21 8.02 -2.39 -0.02 1.19 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 0.60 7.75 -2.39 -0.02 0.58 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.67 8.07 -2.39 -0.02 0.65 16 38 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.05 1.22 6.28 -2.38 -0.01 1.20 16 42 H 0.41 10.50 8.40 -92.71 -0.78 9.72 16 43 H 0.07 2.72 7.57 -2.39 -0.02 2.70 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 47 H 0.06 3.27 5.93 -2.38 -0.01 3.26 16 48 H 0.25 14.60 8.31 -92.72 -0.77 13.83 16 49 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 2.55 7.92 -2.39 -0.02 2.53 16 51 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 52 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -70.13 388.69 1.80 -68.34 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.13 Total: 22.75 kcal Atomic # 6 Polarization: 17.26 SS G_CDS: 5.67 Total: 22.94 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -5.95 Total: -125.84 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.09 Total: -35.58 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.13 1.80 -68.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322825772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.665 kcal (2) G-P(sol) polarization free energy of solvation -70.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds