Wall clock time and date at job start Tue Mar 31 2020 19:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46866 * 2 1 4 4 H 1.08997 * 109.99796 * 336.52573 * 3 2 1 5 5 C 1.54326 * 109.88032 * 97.62182 * 3 2 1 6 6 C 1.55165 * 102.93820 * 141.61087 * 5 3 2 7 7 C 1.54904 * 101.57993 * 324.49818 * 6 5 3 8 8 H 1.09004 * 110.36753 * 278.16762 * 7 6 5 9 9 C 1.53002 * 110.36651 * 155.85304 * 7 6 5 10 10 N 1.47023 * 109.88282 * 215.42935 * 3 2 1 11 11 C 1.34777 * 125.64400 * 61.37469 * 10 3 2 12 12 O 1.21351 * 119.99898 * 174.30057 * 11 10 3 13 13 C 1.49455 * 120.00356 * 354.30061 * 11 10 3 14 14 O 1.21347 * 119.99416 * 53.73444 * 13 11 10 15 15 N 1.34772 * 119.99790 * 233.73164 * 13 11 10 16 16 C 1.46508 * 119.99562 * 179.97438 * 15 13 11 17 17 C 1.53038 * 109.46158 * 275.07259 * 16 15 13 18 18 C 1.53191 * 109.31124 * 178.61784 * 17 16 15 19 19 N 1.46923 * 108.77943 * 54.63016 * 18 17 16 20 20 C 1.36935 * 120.62701 * 126.36906 * 19 18 17 21 21 H 1.08001 * 120.00599 * 301.50233 * 20 19 18 22 22 C 1.38819 * 119.99702 * 121.50851 * 20 19 18 23 23 N 1.31613 * 119.99947 * 345.33435 * 22 20 19 24 24 Si 1.86809 * 119.99834 * 165.33589 * 22 20 19 25 25 H 1.48493 * 109.46870 * 89.99706 * 24 22 20 26 26 H 1.48497 * 109.46817 * 210.00157 * 24 22 20 27 27 H 1.48501 * 109.46781 * 329.99808 * 24 22 20 28 28 C 1.46926 * 118.73920 * 306.39474 * 19 18 17 29 29 C 1.53042 * 109.45887 * 155.00197 * 16 15 13 30 30 H 1.08999 * 109.46919 * 226.68944 * 1 2 3 31 31 H 1.08996 * 109.47036 * 346.69200 * 1 2 3 32 32 H 1.09000 * 109.46542 * 106.69247 * 1 2 3 33 33 H 1.08990 * 109.47294 * 240.00162 * 2 1 3 34 34 H 1.09004 * 109.47045 * 119.99586 * 2 1 3 35 35 H 1.09002 * 110.71608 * 259.96699 * 5 3 2 36 36 H 1.08998 * 110.72201 * 23.24629 * 5 3 2 37 37 H 1.08997 * 111.00049 * 82.57205 * 6 5 3 38 38 H 1.08996 * 110.99795 * 206.38236 * 6 5 3 39 39 H 1.09005 * 109.46638 * 305.09792 * 9 7 6 40 40 H 1.09001 * 109.47295 * 65.09646 * 9 7 6 41 41 H 1.09000 * 109.47440 * 185.10205 * 9 7 6 42 42 H 0.96996 * 120.00613 * 0.02562 * 15 13 11 43 43 H 1.08996 * 109.45701 * 35.03248 * 16 15 13 44 44 H 1.09001 * 109.49853 * 298.56481 * 17 16 15 45 45 H 1.09000 * 109.49782 * 58.66565 * 17 16 15 46 46 H 1.09004 * 109.58357 * 294.84313 * 18 17 16 47 47 H 1.08997 * 109.70419 * 174.49577 * 18 17 16 48 48 H 0.97005 * 119.99589 * 180.02562 * 23 22 20 49 49 H 1.08990 * 109.58944 * 293.81678 * 28 19 18 50 50 H 1.08996 * 109.70243 * 173.45945 * 28 19 18 51 51 H 1.09003 * 109.49867 * 301.34449 * 29 16 15 52 52 H 1.08998 * 109.49623 * 61.43154 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.2785 2.1072 -0.4080 5 6 2.3964 1.8732 1.4385 6 6 3.6753 2.7287 1.2382 7 6 4.3700 1.9813 0.0728 8 1 4.9240 1.1216 0.4501 9 6 5.3041 2.9271 -0.6848 10 7 3.2688 1.5385 -0.8015 11 6 3.3724 1.2619 -2.1165 12 8 4.4144 1.4746 -2.7010 13 6 2.2041 0.6931 -2.8548 14 8 1.1300 1.2564 -2.8171 15 7 2.3436 -0.4454 -3.5625 16 6 1.1982 -1.0032 -4.2858 17 6 0.3664 -1.8671 -3.3351 18 6 -0.8489 -2.4205 -4.0858 19 7 -0.3820 -3.1242 -5.2881 20 6 -0.7602 -4.4178 -5.5304 21 1 -0.5320 -5.1909 -4.8116 22 6 -1.4370 -4.7355 -6.7000 23 7 -1.9682 -3.7803 -7.4332 24 14 -1.5937 -6.5190 -7.2333 25 1 -2.8300 -7.1022 -6.6532 26 1 -1.6616 -6.5883 -8.7151 27 1 -0.4140 -7.2840 -6.7555 28 6 0.4989 -2.4137 -6.2251 29 6 1.6991 -1.8605 -5.4505 30 1 -0.3633 -0.7049 0.7478 31 1 -0.3633 1.0000 0.2365 32 1 -0.3632 -0.2952 -0.9844 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.5953 2.4726 1.8712 36 1 2.6077 1.0033 2.0603 37 1 3.4217 3.7493 0.9518 38 1 4.2958 2.7193 2.1343 39 1 4.7456 3.8042 -1.0119 40 1 6.1169 3.2380 -0.0284 41 1 5.7150 2.4132 -1.5538 42 1 3.2021 -0.8959 -3.5923 43 1 0.5819 -0.1912 -4.6715 44 1 0.9748 -2.6938 -2.9683 45 1 0.0295 -1.2614 -2.4939 46 1 -1.5050 -1.5994 -4.3747 47 1 -1.3925 -3.1141 -3.4444 48 1 -2.4414 -4.0024 -8.2503 49 1 -0.0472 -1.5922 -6.6885 50 1 0.8470 -3.1016 -6.9956 51 1 2.3108 -1.2501 -6.1148 52 1 2.2950 -2.6871 -5.0638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322825773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:00 Heat of formation + Delta-G solvation = -55.932497 kcal Electronic energy + Delta-G solvation = -31258.220987 eV Core-core repulsion = 27257.863454 eV Total energy + Delta-G solvation = -4000.357533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.13367 -39.32591 -37.92163 -37.23034 -34.46121 -34.14883 -32.19697 -32.07132 -30.49570 -30.11638 -29.64621 -26.12729 -25.64312 -24.43046 -23.15037 -22.35391 -22.07824 -21.42030 -20.99568 -19.82073 -19.03881 -17.65970 -17.05943 -16.69656 -16.50090 -15.68298 -15.21807 -14.84109 -14.70679 -14.51365 -14.27537 -13.94409 -13.89391 -13.69749 -13.66696 -13.34883 -13.06035 -12.90271 -12.75821 -12.58486 -12.45624 -12.25777 -12.12513 -11.65023 -11.51408 -11.40359 -11.35723 -11.25126 -11.13067 -10.99193 -10.85708 -10.79323 -10.66523 -10.46923 -10.32456 -10.20544 -9.98260 -9.62242 -9.25671 -8.98533 -8.83737 -8.46956 -6.31731 -5.72932 -3.65851 1.76014 2.19521 2.92288 3.31538 3.39335 3.42195 3.42407 4.12661 4.14738 4.42631 4.43246 4.50348 4.69019 4.85877 4.98028 5.05088 5.13274 5.22571 5.27415 5.28919 5.33775 5.40174 5.47152 5.49320 5.55579 5.56528 5.60801 5.78964 5.80761 5.83638 5.87404 5.97048 6.03093 6.06117 6.13038 6.21133 6.27073 6.29189 6.44201 6.53863 6.62442 6.75463 6.89860 7.01716 7.07812 7.09317 7.29175 7.42219 7.72021 7.82532 8.06045 8.65913 9.22206 9.69150 10.50466 11.17043 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023341 B = 0.002673 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.321537 B =10472.016433 C =11137.605725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C 0.125 3.875 4 H 0.093 0.907 5 C -0.127 4.127 6 C -0.131 4.131 7 C 0.132 3.868 8 H 0.080 0.920 9 C -0.169 4.169 10 N -0.594 5.594 11 C 0.528 3.472 12 O -0.517 6.517 13 C 0.512 3.488 14 O -0.513 6.513 15 N -0.699 5.699 16 C 0.151 3.849 17 C -0.141 4.141 18 C 0.150 3.850 19 N -0.583 5.583 20 C -0.281 4.281 21 H 0.050 0.950 22 C 0.036 3.964 23 N -0.877 5.877 24 Si 0.894 3.106 25 H -0.283 1.283 26 H -0.288 1.288 27 H -0.275 1.275 28 C 0.172 3.828 29 C -0.145 4.145 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.402 0.598 43 H 0.086 0.914 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.019 0.981 47 H 0.057 0.943 48 H 0.256 0.744 49 H 0.025 0.975 50 H 0.061 0.939 51 H 0.056 0.944 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.536 11.565 18.228 24.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C 0.022 3.978 4 H 0.111 0.889 5 C -0.165 4.165 6 C -0.169 4.169 7 C 0.030 3.970 8 H 0.098 0.902 9 C -0.226 4.226 10 N -0.330 5.330 11 C 0.311 3.689 12 O -0.393 6.393 13 C 0.292 3.708 14 O -0.388 6.388 15 N -0.351 5.351 16 C 0.048 3.952 17 C -0.181 4.181 18 C 0.024 3.976 19 N -0.306 5.306 20 C -0.412 4.412 21 H 0.068 0.932 22 C -0.168 4.168 23 N -0.515 5.515 24 Si 0.722 3.278 25 H -0.209 1.209 26 H -0.214 1.214 27 H -0.200 1.200 28 C 0.045 3.955 29 C -0.185 4.185 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.236 0.764 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.037 0.963 47 H 0.076 0.924 48 H 0.066 0.934 49 H 0.043 0.957 50 H 0.079 0.921 51 H 0.075 0.925 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.192 12.076 17.649 24.137 hybrid contribution 0.258 -1.056 -0.432 1.169 sum 11.451 11.020 17.217 23.431 Atomic orbital electron populations 1.21838 0.94141 1.01847 1.02885 1.22080 0.97512 0.95107 1.02465 1.22125 0.86606 0.97797 0.91227 0.88927 1.22812 0.98231 1.00489 0.94926 1.22904 0.96702 0.99394 0.97906 1.22024 0.88085 0.97107 0.89793 0.90245 1.22255 0.98955 0.99483 1.01910 1.48554 1.11604 1.65629 1.07174 1.20113 0.88352 0.79106 0.81282 1.90716 1.29106 1.52929 1.66506 1.19937 0.88183 0.82009 0.80670 1.90787 1.26164 1.59356 1.62525 1.46291 1.15242 1.23966 1.49567 1.21166 0.85891 0.96008 0.92099 1.22490 0.99241 0.98393 0.98019 1.20941 0.92073 0.95142 0.89492 1.43698 1.53439 1.11393 1.22049 1.18774 1.33294 0.84068 1.05040 0.93226 1.25815 0.94604 0.97048 0.99350 1.70044 1.34514 1.31838 1.15150 0.86483 0.78338 0.85275 0.77655 1.20894 1.21414 1.19961 1.20731 0.87823 0.95313 0.91592 1.22494 1.00961 0.98406 0.96620 0.92663 0.92417 0.91464 0.91774 0.91349 0.89671 0.90128 0.90305 0.89611 0.92521 0.91996 0.89197 0.76400 0.89606 0.92363 0.92434 0.96252 0.92433 0.93400 0.95720 0.92050 0.92548 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.18 37.16 0.38 -1.19 16 2 C -0.13 -1.35 5.35 -26.73 -0.14 -1.49 16 3 C 0.13 1.22 2.38 -66.95 -0.16 1.06 16 4 H 0.09 1.04 7.00 -51.93 -0.36 0.68 16 5 C -0.13 -0.82 6.48 -24.89 -0.16 -0.98 16 6 C -0.13 -0.82 6.50 -24.58 -0.16 -0.98 16 7 C 0.13 1.16 3.79 -66.42 -0.25 0.91 16 8 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 9 C -0.17 -1.58 8.72 37.16 0.32 -1.25 16 10 N -0.59 -6.69 2.98 -156.10 -0.46 -7.16 16 11 C 0.53 7.44 7.24 -11.58 -0.08 7.36 16 12 O -0.52 -8.13 14.60 5.50 0.08 -8.05 16 13 C 0.51 7.81 5.08 -11.58 -0.06 7.75 16 14 O -0.51 -8.92 15.56 5.50 0.09 -8.83 16 15 N -0.70 -10.19 5.08 -54.19 -0.28 -10.46 16 16 C 0.15 2.56 2.42 -67.89 -0.16 2.39 16 17 C -0.14 -2.47 5.65 -26.61 -0.15 -2.62 16 18 C 0.15 3.22 6.52 -3.71 -0.02 3.20 16 19 N -0.58 -14.29 2.72 -172.33 -0.47 -14.76 16 20 C -0.28 -7.60 9.14 -15.06 -0.14 -7.74 16 21 H 0.05 1.35 7.87 -52.49 -0.41 0.93 16 22 C 0.04 0.98 5.22 -17.43 -0.09 0.89 16 23 N -0.88 -25.34 13.21 55.49 0.73 -24.61 16 24 Si 0.89 21.01 29.58 -169.99 -5.03 15.98 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 28 C 0.17 3.86 5.85 -3.71 -0.02 3.84 16 29 C -0.14 -2.55 5.55 -26.61 -0.15 -2.70 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.56 7.33 -51.93 -0.38 0.18 16 32 H 0.07 0.87 6.01 -51.93 -0.31 0.56 16 33 H 0.06 0.78 5.83 -51.93 -0.30 0.48 16 34 H 0.07 0.58 7.28 -51.93 -0.38 0.20 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.45 7.33 -51.93 -0.38 0.07 16 37 H 0.08 0.51 8.04 -51.93 -0.42 0.09 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 1.07 5.75 -51.93 -0.30 0.77 16 42 H 0.40 5.15 8.60 -40.82 -0.35 4.80 16 43 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.95 6.01 -51.93 -0.31 0.63 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 48 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.06 1.46 7.87 -51.93 -0.41 1.06 16 51 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 52 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 399.37 15.07 6.02 6.02 Total: -1.00 -31.05 399.37 -9.28 -40.33 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -8.91 Total: 3.10 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -1.05 Total: 8.44 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.48 Total: -56.99 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.17 Total: -16.88 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.05 -9.28 -40.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322825773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.602 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds