Wall clock time and date at job start Tue Mar 31 2020 19:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46866 * 2 1 4 4 H 1.08997 * 109.99796 * 336.52573 * 3 2 1 5 5 C 1.54326 * 109.88032 * 97.62182 * 3 2 1 6 6 C 1.55165 * 102.93820 * 141.61087 * 5 3 2 7 7 C 1.54904 * 101.57993 * 324.49818 * 6 5 3 8 8 H 1.09004 * 110.36753 * 278.16762 * 7 6 5 9 9 C 1.53002 * 110.36651 * 155.85304 * 7 6 5 10 10 N 1.47023 * 109.88282 * 215.42935 * 3 2 1 11 11 C 1.34777 * 125.64400 * 61.37469 * 10 3 2 12 12 O 1.21351 * 119.99898 * 174.30057 * 11 10 3 13 13 C 1.49455 * 120.00356 * 354.30061 * 11 10 3 14 14 O 1.21347 * 119.99416 * 53.73444 * 13 11 10 15 15 N 1.34772 * 119.99790 * 233.73164 * 13 11 10 16 16 C 1.46508 * 119.99562 * 179.97438 * 15 13 11 17 17 C 1.53038 * 109.46158 * 275.07259 * 16 15 13 18 18 C 1.53191 * 109.31124 * 178.61784 * 17 16 15 19 19 N 1.46923 * 108.77943 * 54.63016 * 18 17 16 20 20 C 1.36935 * 120.62701 * 126.36906 * 19 18 17 21 21 H 1.08001 * 120.00599 * 301.50233 * 20 19 18 22 22 C 1.38819 * 119.99702 * 121.50851 * 20 19 18 23 23 N 1.31613 * 119.99947 * 345.33435 * 22 20 19 24 24 Si 1.86809 * 119.99834 * 165.33589 * 22 20 19 25 25 H 1.48493 * 109.46870 * 89.99706 * 24 22 20 26 26 H 1.48497 * 109.46817 * 210.00157 * 24 22 20 27 27 H 1.48501 * 109.46781 * 329.99808 * 24 22 20 28 28 C 1.46926 * 118.73920 * 306.39474 * 19 18 17 29 29 C 1.53042 * 109.45887 * 155.00197 * 16 15 13 30 30 H 1.08999 * 109.46919 * 226.68944 * 1 2 3 31 31 H 1.08996 * 109.47036 * 346.69200 * 1 2 3 32 32 H 1.09000 * 109.46542 * 106.69247 * 1 2 3 33 33 H 1.08990 * 109.47294 * 240.00162 * 2 1 3 34 34 H 1.09004 * 109.47045 * 119.99586 * 2 1 3 35 35 H 1.09002 * 110.71608 * 259.96699 * 5 3 2 36 36 H 1.08998 * 110.72201 * 23.24629 * 5 3 2 37 37 H 1.08997 * 111.00049 * 82.57205 * 6 5 3 38 38 H 1.08996 * 110.99795 * 206.38236 * 6 5 3 39 39 H 1.09005 * 109.46638 * 305.09792 * 9 7 6 40 40 H 1.09001 * 109.47295 * 65.09646 * 9 7 6 41 41 H 1.09000 * 109.47440 * 185.10205 * 9 7 6 42 42 H 0.96996 * 120.00613 * 0.02562 * 15 13 11 43 43 H 1.08996 * 109.45701 * 35.03248 * 16 15 13 44 44 H 1.09001 * 109.49853 * 298.56481 * 17 16 15 45 45 H 1.09000 * 109.49782 * 58.66565 * 17 16 15 46 46 H 1.09004 * 109.58357 * 294.84313 * 18 17 16 47 47 H 1.08997 * 109.70419 * 174.49577 * 18 17 16 48 48 H 0.97005 * 119.99589 * 180.02562 * 23 22 20 49 49 H 1.08990 * 109.58944 * 293.81678 * 28 19 18 50 50 H 1.08996 * 109.70243 * 173.45945 * 28 19 18 51 51 H 1.09003 * 109.49867 * 301.34449 * 29 16 15 52 52 H 1.08998 * 109.49623 * 61.43154 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.2785 2.1072 -0.4080 5 6 2.3964 1.8732 1.4385 6 6 3.6753 2.7287 1.2382 7 6 4.3700 1.9813 0.0728 8 1 4.9240 1.1216 0.4501 9 6 5.3041 2.9271 -0.6848 10 7 3.2688 1.5385 -0.8015 11 6 3.3724 1.2619 -2.1165 12 8 4.4144 1.4746 -2.7010 13 6 2.2041 0.6931 -2.8548 14 8 1.1300 1.2564 -2.8171 15 7 2.3436 -0.4454 -3.5625 16 6 1.1982 -1.0032 -4.2858 17 6 0.3664 -1.8671 -3.3351 18 6 -0.8489 -2.4205 -4.0858 19 7 -0.3820 -3.1242 -5.2881 20 6 -0.7602 -4.4178 -5.5304 21 1 -0.5320 -5.1909 -4.8116 22 6 -1.4370 -4.7355 -6.7000 23 7 -1.9682 -3.7803 -7.4332 24 14 -1.5937 -6.5190 -7.2333 25 1 -2.8300 -7.1022 -6.6532 26 1 -1.6616 -6.5883 -8.7151 27 1 -0.4140 -7.2840 -6.7555 28 6 0.4989 -2.4137 -6.2251 29 6 1.6991 -1.8605 -5.4505 30 1 -0.3633 -0.7049 0.7478 31 1 -0.3633 1.0000 0.2365 32 1 -0.3632 -0.2952 -0.9844 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.5953 2.4726 1.8712 36 1 2.6077 1.0033 2.0603 37 1 3.4217 3.7493 0.9518 38 1 4.2958 2.7193 2.1343 39 1 4.7456 3.8042 -1.0119 40 1 6.1169 3.2380 -0.0284 41 1 5.7150 2.4132 -1.5538 42 1 3.2021 -0.8959 -3.5923 43 1 0.5819 -0.1912 -4.6715 44 1 0.9748 -2.6938 -2.9683 45 1 0.0295 -1.2614 -2.4939 46 1 -1.5050 -1.5994 -4.3747 47 1 -1.3925 -3.1141 -3.4444 48 1 -2.4414 -4.0024 -8.2503 49 1 -0.0472 -1.5922 -6.6885 50 1 0.8470 -3.1016 -6.9956 51 1 2.3108 -1.2501 -6.1148 52 1 2.2950 -2.6871 -5.0638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322825773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:59 Heat of formation + Delta-G solvation = -75.404449 kcal Electronic energy + Delta-G solvation = -31259.065354 eV Core-core repulsion = 27257.863454 eV Total energy + Delta-G solvation = -4001.201900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.16706 -40.47676 -39.02274 -38.69741 -36.06318 -34.91862 -34.03318 -32.89257 -31.79926 -31.50483 -31.07998 -27.46132 -26.64517 -25.85996 -24.10936 -23.89173 -23.46225 -22.32061 -21.95066 -21.28560 -20.34366 -18.89548 -18.38866 -17.97735 -17.65678 -16.97091 -16.63788 -16.26974 -15.90124 -15.55007 -15.48277 -15.43965 -15.16757 -14.79013 -14.68566 -14.55607 -14.35819 -14.17160 -14.04637 -13.76869 -13.43955 -13.29450 -13.14906 -12.88554 -12.84769 -12.76893 -12.61130 -12.55485 -12.40064 -12.21359 -12.10123 -12.02754 -11.95031 -11.74008 -11.67907 -11.62531 -11.39951 -11.27108 -10.56259 -10.45307 -10.20928 -9.87125 -8.38451 -7.74559 -5.78575 0.61484 1.14507 1.45148 1.46989 1.57412 1.75589 2.38058 2.46270 3.18437 3.21541 3.50466 3.65738 3.69001 3.81345 3.84340 3.98580 3.99772 4.14700 4.24029 4.27095 4.34572 4.43804 4.48099 4.59374 4.64072 4.68310 4.70232 4.71049 4.78773 4.86875 4.93294 4.95940 5.01742 5.06404 5.10499 5.14278 5.15824 5.19525 5.21826 5.25516 5.30356 5.31576 5.34798 5.48652 5.51298 5.53980 5.68440 6.10623 6.21003 6.55020 6.66686 6.86570 7.21111 7.70200 8.46745 9.08180 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023341 B = 0.002673 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.321537 B =10472.016433 C =11137.605725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.119 3.881 4 H 0.074 0.926 5 C -0.118 4.118 6 C -0.121 4.121 7 C 0.123 3.877 8 H 0.093 0.907 9 C -0.164 4.164 10 N -0.588 5.588 11 C 0.527 3.473 12 O -0.539 6.539 13 C 0.513 3.487 14 O -0.538 6.538 15 N -0.689 5.689 16 C 0.163 3.837 17 C -0.122 4.122 18 C 0.150 3.850 19 N -0.600 5.600 20 C -0.291 4.291 21 H 0.049 0.951 22 C -0.015 4.015 23 N -0.916 5.916 24 Si 0.963 3.037 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.264 1.264 28 C 0.176 3.824 29 C -0.128 4.128 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.115 0.885 39 H 0.044 0.956 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.413 0.587 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.000 1.000 47 H 0.053 0.947 48 H 0.255 0.745 49 H -0.001 1.001 50 H 0.041 0.959 51 H 0.077 0.923 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.266 11.389 21.158 27.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.016 3.984 4 H 0.092 0.908 5 C -0.155 4.155 6 C -0.159 4.159 7 C 0.022 3.978 8 H 0.111 0.889 9 C -0.222 4.222 10 N -0.322 5.322 11 C 0.310 3.690 12 O -0.417 6.417 13 C 0.294 3.706 14 O -0.415 6.415 15 N -0.341 5.341 16 C 0.059 3.941 17 C -0.162 4.162 18 C 0.024 3.976 19 N -0.324 5.324 20 C -0.422 4.422 21 H 0.067 0.933 22 C -0.215 4.215 23 N -0.556 5.556 24 Si 0.789 3.211 25 H -0.205 1.205 26 H -0.216 1.216 27 H -0.189 1.189 28 C 0.050 3.950 29 C -0.168 4.168 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.134 0.866 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.250 0.750 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.018 0.982 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.017 0.983 50 H 0.060 0.940 51 H 0.095 0.905 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.951 11.904 20.635 27.115 hybrid contribution -0.314 -0.934 -1.290 1.623 sum 12.637 10.970 19.345 25.578 Atomic orbital electron populations 1.21798 0.94612 1.02514 1.01482 1.22074 0.97044 0.95318 1.02458 1.22279 0.85654 0.97306 0.93120 0.90837 1.22835 0.98780 1.01410 0.92504 1.22912 0.96591 0.98704 0.97685 1.22353 0.87601 0.97856 0.90035 0.88870 1.22185 0.99691 0.98785 1.01526 1.48689 1.13120 1.63965 1.06433 1.19785 0.87394 0.79541 0.82313 1.90721 1.29483 1.54272 1.67260 1.20260 0.88383 0.81648 0.80305 1.90776 1.27368 1.60069 1.63280 1.46018 1.14964 1.24006 1.49110 1.20804 0.86349 0.95052 0.91920 1.22241 0.97571 0.98655 0.97755 1.20947 0.93583 0.94230 0.88848 1.43949 1.54262 1.11171 1.22999 1.19064 1.32822 0.85203 1.05110 0.93318 1.26577 0.94374 1.01096 0.99490 1.70178 1.35842 1.33980 1.15616 0.85411 0.78557 0.80321 0.76853 1.20478 1.21600 1.18877 1.20587 0.89021 0.93888 0.91547 1.22238 0.98912 0.99020 0.96602 0.91208 0.91866 0.94470 0.93951 0.89042 0.88141 0.88370 0.90557 0.86650 0.93731 0.89365 0.91944 0.75011 0.91866 0.91501 0.91295 0.98240 0.92849 0.93644 0.98291 0.94013 0.90480 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 10.18 71.98 0.73 -2.18 16 2 C -0.13 -2.41 5.35 30.60 0.16 -2.24 16 3 C 0.12 2.09 2.38 45.34 0.11 2.20 16 4 H 0.07 1.60 7.00 -2.39 -0.02 1.58 16 5 C -0.12 -1.08 6.48 31.79 0.21 -0.87 16 6 C -0.12 -1.05 6.50 31.99 0.21 -0.84 16 7 C 0.12 1.84 3.79 45.47 0.17 2.01 16 8 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 9 C -0.16 -2.81 8.72 71.98 0.63 -2.19 16 10 N -0.59 -12.40 2.98 -766.14 -2.28 -14.68 16 11 C 0.53 14.59 7.24 87.27 0.63 15.22 16 12 O -0.54 -16.86 14.60 -3.25 -0.05 -16.91 16 13 C 0.51 15.60 5.08 87.27 0.44 16.04 16 14 O -0.54 -19.01 15.56 -3.24 -0.05 -19.06 16 15 N -0.69 -19.69 5.08 -443.73 -2.25 -21.94 16 16 C 0.16 5.51 2.42 45.02 0.11 5.62 16 17 C -0.12 -4.27 5.65 30.67 0.17 -4.10 16 18 C 0.15 6.61 6.52 86.36 0.56 7.18 16 19 N -0.60 -30.15 2.72 -699.13 -1.90 -32.05 16 20 C -0.29 -15.96 9.14 84.04 0.77 -15.19 16 21 H 0.05 2.65 7.87 -2.91 -0.02 2.63 16 22 C -0.02 -0.84 5.22 84.86 0.44 -0.40 16 23 N -0.92 -54.43 13.21 21.65 0.29 -54.15 16 24 Si 0.96 43.63 29.58 68.60 2.03 45.66 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 27 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 28 C 0.18 8.13 5.85 86.36 0.51 8.63 16 29 C -0.13 -4.46 5.55 30.67 0.17 -4.29 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.16 7.33 -2.39 -0.02 1.14 16 32 H 0.04 0.96 6.01 -2.39 -0.01 0.94 16 33 H 0.04 0.97 5.83 -2.39 -0.01 0.96 16 34 H 0.09 1.25 7.28 -2.38 -0.02 1.24 16 35 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.10 0.62 7.33 -2.39 -0.02 0.60 16 37 H 0.08 0.74 8.04 -2.39 -0.02 0.72 16 38 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.04 0.85 8.12 -2.38 -0.02 0.83 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.45 5.75 -2.39 -0.01 1.44 16 42 H 0.41 10.08 8.60 -92.71 -0.80 9.28 16 43 H 0.06 2.48 7.58 -2.39 -0.02 2.46 16 44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.07 2.28 6.01 -2.39 -0.01 2.26 16 46 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 47 H 0.05 2.35 7.93 -2.39 -0.02 2.33 16 48 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 49 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 50 H 0.04 2.05 7.87 -2.39 -0.02 2.03 16 51 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 52 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -69.81 399.37 1.92 -67.89 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.12 Total: 20.65 kcal Atomic # 6 Polarization: 18.57 SS G_CDS: 6.02 Total: 24.60 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -6.15 Total: -122.82 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.10 Total: -35.98 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -69.81 1.92 -67.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322825773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.510 kcal (2) G-P(sol) polarization free energy of solvation -69.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds