Wall clock time and date at job start Tue Mar 31 2020 19:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46609 * 2 1 4 4 H 1.08992 * 109.87769 * 306.25770 * 3 2 1 5 5 C 1.54320 * 109.88205 * 67.44197 * 3 2 1 6 6 C 1.55154 * 102.94674 * 141.60738 * 5 3 2 7 7 C 1.55131 * 101.48285 * 324.32985 * 6 5 3 8 8 H 1.09010 * 110.34094 * 156.05844 * 7 6 5 9 9 C 1.52994 * 110.49687 * 278.45193 * 7 6 5 10 10 N 1.47027 * 109.87827 * 185.24411 * 3 2 1 11 11 C 1.34776 * 125.64922 * 61.61058 * 10 3 2 12 12 O 1.21343 * 120.00016 * 354.95499 * 11 10 3 13 13 C 1.49446 * 120.00028 * 174.95885 * 11 10 3 14 14 O 1.21353 * 120.00146 * 0.02562 * 13 11 10 15 15 N 1.34781 * 120.00266 * 180.27284 * 13 11 10 16 16 C 1.46497 * 120.00483 * 179.72692 * 15 13 11 17 17 C 1.53041 * 109.45645 * 275.07180 * 16 15 13 18 18 C 1.53195 * 109.31355 * 178.61344 * 17 16 15 19 19 N 1.46933 * 108.77444 * 54.62899 * 18 17 16 20 20 C 1.36932 * 120.63021 * 126.41459 * 19 18 17 21 21 H 1.08004 * 120.00199 * 330.03771 * 20 19 18 22 22 C 1.38810 * 120.00228 * 150.03274 * 20 19 18 23 23 N 1.31621 * 119.99834 * 343.65943 * 22 20 19 24 24 Si 1.86799 * 119.99976 * 163.65207 * 22 20 19 25 25 H 1.48497 * 109.47256 * 90.00728 * 24 22 20 26 26 H 1.48506 * 109.47174 * 210.00151 * 24 22 20 27 27 H 1.48499 * 109.47548 * 330.00439 * 24 22 20 28 28 C 1.46919 * 118.73616 * 306.39419 * 19 18 17 29 29 C 1.53036 * 109.46394 * 154.99896 * 16 15 13 30 30 H 1.08998 * 109.47040 * 293.90446 * 1 2 3 31 31 H 1.08997 * 109.47226 * 53.90578 * 1 2 3 32 32 H 1.09003 * 109.46727 * 173.90617 * 1 2 3 33 33 H 1.08997 * 109.47231 * 240.00209 * 2 1 3 34 34 H 1.09000 * 109.47360 * 119.99933 * 2 1 3 35 35 H 1.09007 * 110.71494 * 259.96712 * 5 3 2 36 36 H 1.08996 * 110.72432 * 23.06311 * 5 3 2 37 37 H 1.09000 * 111.00418 * 82.56815 * 6 5 3 38 38 H 1.08997 * 111.00937 * 206.38270 * 6 5 3 39 39 H 1.08997 * 109.47529 * 175.35453 * 9 7 6 40 40 H 1.08999 * 109.47331 * 295.35336 * 9 7 6 41 41 H 1.08997 * 109.47068 * 55.35249 * 9 7 6 42 42 H 0.97001 * 119.99659 * 359.72051 * 15 13 11 43 43 H 1.08997 * 109.45936 * 35.02107 * 16 15 13 44 44 H 1.09004 * 109.49723 * 298.56043 * 17 16 15 45 45 H 1.09000 * 109.50221 * 58.66079 * 17 16 15 46 46 H 1.08994 * 109.58525 * 294.84428 * 18 17 16 47 47 H 1.08998 * 109.70639 * 174.48573 * 18 17 16 48 48 H 0.96996 * 119.99964 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.59062 * 293.81811 * 28 19 18 50 50 H 1.09007 * 109.58623 * 173.39785 * 28 19 18 51 51 H 1.08998 * 109.49593 * 301.33875 * 29 16 15 52 52 H 1.08999 * 109.49632 * 61.43506 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5919 1.9940 -0.8265 5 6 1.6899 2.1229 1.3402 6 6 2.9459 2.9864 1.6301 7 6 4.0779 2.0796 1.0798 8 1 4.9503 2.6789 0.8186 9 6 4.4536 1.0092 2.1063 10 7 3.5047 1.4551 -0.1264 11 6 4.2073 0.9707 -1.1695 12 8 3.6358 0.3892 -2.0683 13 6 5.6902 1.1496 -1.2193 14 8 6.2618 1.7306 -0.3202 15 7 6.3921 0.6700 -2.2651 16 6 7.8450 0.8506 -2.3169 17 6 8.1673 2.2217 -2.9155 18 6 9.6860 2.4213 -2.9361 19 7 10.3017 1.2925 -3.6471 20 6 11.1533 1.5102 -4.6971 21 1 11.0314 2.3848 -5.3189 22 6 12.1734 0.6069 -4.9622 23 7 12.5317 -0.2685 -4.0470 24 14 13.0376 0.6336 -6.6181 25 1 14.2036 1.5508 -6.5532 26 1 13.5031 -0.7356 -6.9557 27 1 12.0932 1.1067 -7.6619 28 6 9.9866 -0.0743 -3.2098 29 6 8.4646 -0.2460 -3.1862 30 1 -0.3633 0.4164 0.9395 31 1 -0.3633 0.6054 -0.8304 32 1 -0.3633 -1.0219 -0.1091 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.8058 2.7517 1.2341 36 1 1.5408 1.3792 2.1229 37 1 2.9022 3.9330 1.0913 38 1 3.0665 3.1538 2.7004 39 1 5.1898 0.3324 1.6727 40 1 4.8754 1.4863 2.9910 41 1 3.5634 0.4463 2.3867 42 1 5.9353 0.2051 -2.9836 43 1 8.2546 0.7895 -1.3087 44 1 7.7796 2.2747 -3.9329 45 1 7.7061 3.0011 -2.3089 46 1 10.0634 2.4591 -1.9143 47 1 9.9275 3.3520 -3.4495 48 1 13.2442 -0.8999 -4.2323 49 1 10.3886 -0.2400 -2.2103 50 1 10.4243 -0.7905 -3.9053 51 1 8.2149 -1.2229 -2.7723 52 1 8.0741 -0.1697 -4.2010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322825774.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:03 Heat of formation + Delta-G solvation = -55.107093 kcal Electronic energy + Delta-G solvation = -30618.416131 eV Core-core repulsion = 26618.094390 eV Total energy + Delta-G solvation = -4000.321741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.07669 -39.40444 -37.91091 -37.32845 -34.62011 -34.07660 -32.19949 -31.89931 -30.19697 -30.07228 -29.50542 -26.70150 -25.64037 -24.47247 -23.16437 -22.37630 -22.17491 -21.23993 -20.64472 -19.91498 -19.09379 -17.67000 -17.11787 -16.65898 -16.03803 -15.80639 -15.36949 -14.93041 -14.77904 -14.54188 -14.17170 -14.12411 -13.72524 -13.69876 -13.54833 -13.22505 -13.01899 -12.98184 -12.68477 -12.62899 -12.55870 -12.42138 -12.28135 -11.79162 -11.56994 -11.49034 -11.43955 -11.15693 -11.05934 -10.91189 -10.87123 -10.72546 -10.58840 -10.51167 -10.31446 -10.08376 -9.84554 -9.65653 -9.32209 -8.96361 -8.83176 -8.48392 -6.68172 -5.81607 -3.25417 1.46890 2.26514 3.24956 3.36529 3.43831 3.46198 3.47666 4.18222 4.20503 4.46926 4.48298 4.51745 4.76138 4.85633 4.90156 5.06219 5.08981 5.26251 5.28544 5.33644 5.34424 5.37059 5.46028 5.47555 5.52473 5.55634 5.61265 5.72884 5.76936 5.79762 5.81659 5.87070 5.98383 6.02890 6.06049 6.16889 6.22059 6.27786 6.47419 6.48910 6.54461 6.74017 6.79191 6.95297 7.08485 7.27826 7.35240 7.57938 7.75957 7.79048 8.11259 8.43817 9.18967 9.81576 10.39455 11.27507 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027144 B = 0.002302 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.297155 B =12158.168061 C =12559.680298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.136 3.864 4 H 0.078 0.922 5 C -0.127 4.127 6 C -0.132 4.132 7 C 0.116 3.884 8 H 0.117 0.883 9 C -0.152 4.152 10 N -0.585 5.585 11 C 0.522 3.478 12 O -0.523 6.523 13 C 0.505 3.495 14 O -0.518 6.518 15 N -0.690 5.690 16 C 0.150 3.850 17 C -0.140 4.140 18 C 0.148 3.852 19 N -0.592 5.592 20 C -0.254 4.254 21 H 0.065 0.935 22 C 0.004 3.996 23 N -0.902 5.902 24 Si 0.902 3.098 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.176 3.824 29 C -0.148 4.148 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.407 0.593 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.021 0.979 47 H 0.057 0.943 48 H 0.254 0.746 49 H 0.023 0.977 50 H 0.090 0.910 51 H 0.056 0.944 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.289 2.800 12.337 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.034 3.966 4 H 0.096 0.904 5 C -0.165 4.165 6 C -0.170 4.170 7 C 0.014 3.986 8 H 0.135 0.865 9 C -0.211 4.211 10 N -0.320 5.320 11 C 0.305 3.695 12 O -0.399 6.399 13 C 0.285 3.715 14 O -0.395 6.395 15 N -0.341 5.341 16 C 0.047 3.953 17 C -0.180 4.180 18 C 0.021 3.979 19 N -0.315 5.315 20 C -0.384 4.384 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.546 5.546 24 Si 0.732 3.268 25 H -0.213 1.213 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.050 3.950 29 C -0.188 4.188 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.243 0.757 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.039 0.961 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.041 0.959 50 H 0.108 0.892 51 H 0.075 0.925 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.962 2.749 12.396 26.239 hybrid contribution 0.222 -0.329 -1.152 1.219 sum -22.740 2.420 11.244 25.483 Atomic orbital electron populations 1.21709 0.95041 1.01964 1.01732 1.21946 0.96229 0.96031 1.03433 1.21759 0.79576 0.96946 0.98364 0.90355 1.22737 0.98443 0.99210 0.96068 1.22913 0.93980 0.98114 1.01989 1.22380 0.97814 0.94302 0.84145 0.86539 1.22039 1.01363 0.98975 0.98675 1.48456 1.07005 1.58145 1.18347 1.20066 0.88309 0.79472 0.81657 1.90730 1.71417 1.40507 1.37217 1.19956 0.87491 0.80639 0.83428 1.90683 1.70868 1.40865 1.37089 1.46227 1.09436 1.55973 1.22512 1.21220 0.76356 0.96720 1.01013 1.22401 0.99900 0.95428 1.00267 1.20870 0.89300 0.92119 0.95568 1.44071 1.51755 0.99736 1.35919 1.19148 1.06198 1.09211 1.03834 0.91744 1.25102 0.96428 0.99990 0.97969 1.70019 1.30282 1.22441 1.31886 0.86308 0.79529 0.76960 0.84028 1.21345 1.21545 1.20457 1.20714 0.87217 0.88048 0.99036 1.22569 1.01384 0.96001 0.98824 0.92671 0.92571 0.92482 0.90188 0.91807 0.90010 0.90243 0.90451 0.89589 0.92099 0.91267 0.92784 0.75707 0.89575 0.92095 0.92662 0.96115 0.92421 0.93565 0.95937 0.89221 0.92521 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 37.16 0.36 -0.63 16 2 C -0.14 -1.23 5.40 -26.73 -0.14 -1.38 16 3 C 0.14 1.23 2.92 -66.95 -0.20 1.03 16 4 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.13 -0.79 5.34 -24.90 -0.13 -0.92 16 6 C -0.13 -0.90 6.58 -24.46 -0.16 -1.06 16 7 C 0.12 1.15 2.74 -66.30 -0.18 0.96 16 8 H 0.12 1.39 5.86 -51.92 -0.30 1.08 16 9 C -0.15 -1.41 9.41 37.15 0.35 -1.06 16 10 N -0.59 -6.64 2.71 -155.97 -0.42 -7.06 16 11 C 0.52 7.29 7.73 -11.59 -0.09 7.20 16 12 O -0.52 -8.11 15.26 5.50 0.08 -8.03 16 13 C 0.50 7.63 7.82 -11.59 -0.09 7.54 16 14 O -0.52 -8.47 13.06 5.49 0.07 -8.40 16 15 N -0.69 -10.43 5.07 -54.20 -0.27 -10.70 16 16 C 0.15 2.58 2.42 -67.89 -0.16 2.41 16 17 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 18 C 0.15 3.14 6.52 -3.71 -0.02 3.11 16 19 N -0.59 -14.64 2.98 -172.32 -0.51 -15.16 16 20 C -0.25 -6.91 9.56 -15.06 -0.14 -7.05 16 21 H 0.06 1.72 7.88 -52.48 -0.41 1.31 16 22 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 23 N -0.90 -25.90 11.30 55.49 0.63 -25.27 16 24 Si 0.90 21.49 29.58 -169.99 -5.03 16.46 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.18 4.09 5.28 -3.72 -0.02 4.07 16 29 C -0.15 -2.71 5.55 -26.62 -0.15 -2.86 16 30 H 0.05 0.30 7.68 -51.93 -0.40 -0.10 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.93 6.55 -51.93 -0.34 0.59 16 34 H 0.06 0.56 8.02 -51.93 -0.42 0.14 16 35 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.08 0.45 7.32 -51.93 -0.38 0.07 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.46 8.05 -51.93 -0.42 0.04 16 39 H 0.06 0.70 7.92 -51.93 -0.41 0.28 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.44 7.37 -51.93 -0.38 0.06 16 42 H 0.41 5.71 8.07 -40.82 -0.33 5.38 16 43 H 0.09 1.61 7.58 -51.93 -0.39 1.21 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.09 2.32 6.19 -51.92 -0.32 2.00 16 51 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 401.24 15.07 6.05 6.05 Total: -1.00 -30.31 401.24 -9.56 -39.88 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -9.13 Total: 3.50 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -1.02 Total: 8.73 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.59 Total: -58.19 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.16 Total: -16.43 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.31 -9.56 -39.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322825774.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.230 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds