Wall clock time and date at job start Tue Mar 31 2020 19:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46609 * 2 1 4 4 H 1.08992 * 109.87769 * 306.25770 * 3 2 1 5 5 C 1.54320 * 109.88205 * 67.44197 * 3 2 1 6 6 C 1.55154 * 102.94674 * 141.60738 * 5 3 2 7 7 C 1.55131 * 101.48285 * 324.32985 * 6 5 3 8 8 H 1.09010 * 110.34094 * 156.05844 * 7 6 5 9 9 C 1.52994 * 110.49687 * 278.45193 * 7 6 5 10 10 N 1.47027 * 109.87827 * 185.24411 * 3 2 1 11 11 C 1.34776 * 125.64922 * 61.61058 * 10 3 2 12 12 O 1.21343 * 120.00016 * 354.95499 * 11 10 3 13 13 C 1.49446 * 120.00028 * 174.95885 * 11 10 3 14 14 O 1.21353 * 120.00146 * 0.02562 * 13 11 10 15 15 N 1.34781 * 120.00266 * 180.27284 * 13 11 10 16 16 C 1.46497 * 120.00483 * 179.72692 * 15 13 11 17 17 C 1.53041 * 109.45645 * 275.07180 * 16 15 13 18 18 C 1.53195 * 109.31355 * 178.61344 * 17 16 15 19 19 N 1.46933 * 108.77444 * 54.62899 * 18 17 16 20 20 C 1.36932 * 120.63021 * 126.41459 * 19 18 17 21 21 H 1.08004 * 120.00199 * 330.03771 * 20 19 18 22 22 C 1.38810 * 120.00228 * 150.03274 * 20 19 18 23 23 N 1.31621 * 119.99834 * 343.65943 * 22 20 19 24 24 Si 1.86799 * 119.99976 * 163.65207 * 22 20 19 25 25 H 1.48497 * 109.47256 * 90.00728 * 24 22 20 26 26 H 1.48506 * 109.47174 * 210.00151 * 24 22 20 27 27 H 1.48499 * 109.47548 * 330.00439 * 24 22 20 28 28 C 1.46919 * 118.73616 * 306.39419 * 19 18 17 29 29 C 1.53036 * 109.46394 * 154.99896 * 16 15 13 30 30 H 1.08998 * 109.47040 * 293.90446 * 1 2 3 31 31 H 1.08997 * 109.47226 * 53.90578 * 1 2 3 32 32 H 1.09003 * 109.46727 * 173.90617 * 1 2 3 33 33 H 1.08997 * 109.47231 * 240.00209 * 2 1 3 34 34 H 1.09000 * 109.47360 * 119.99933 * 2 1 3 35 35 H 1.09007 * 110.71494 * 259.96712 * 5 3 2 36 36 H 1.08996 * 110.72432 * 23.06311 * 5 3 2 37 37 H 1.09000 * 111.00418 * 82.56815 * 6 5 3 38 38 H 1.08997 * 111.00937 * 206.38270 * 6 5 3 39 39 H 1.08997 * 109.47529 * 175.35453 * 9 7 6 40 40 H 1.08999 * 109.47331 * 295.35336 * 9 7 6 41 41 H 1.08997 * 109.47068 * 55.35249 * 9 7 6 42 42 H 0.97001 * 119.99659 * 359.72051 * 15 13 11 43 43 H 1.08997 * 109.45936 * 35.02107 * 16 15 13 44 44 H 1.09004 * 109.49723 * 298.56043 * 17 16 15 45 45 H 1.09000 * 109.50221 * 58.66079 * 17 16 15 46 46 H 1.08994 * 109.58525 * 294.84428 * 18 17 16 47 47 H 1.08998 * 109.70639 * 174.48573 * 18 17 16 48 48 H 0.96996 * 119.99964 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.59062 * 293.81811 * 28 19 18 50 50 H 1.09007 * 109.58623 * 173.39785 * 28 19 18 51 51 H 1.08998 * 109.49593 * 301.33875 * 29 16 15 52 52 H 1.08999 * 109.49632 * 61.43506 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5919 1.9940 -0.8265 5 6 1.6899 2.1229 1.3402 6 6 2.9459 2.9864 1.6301 7 6 4.0779 2.0796 1.0798 8 1 4.9503 2.6789 0.8186 9 6 4.4536 1.0092 2.1063 10 7 3.5047 1.4551 -0.1264 11 6 4.2073 0.9707 -1.1695 12 8 3.6358 0.3892 -2.0683 13 6 5.6902 1.1496 -1.2193 14 8 6.2618 1.7306 -0.3202 15 7 6.3921 0.6700 -2.2651 16 6 7.8450 0.8506 -2.3169 17 6 8.1673 2.2217 -2.9155 18 6 9.6860 2.4213 -2.9361 19 7 10.3017 1.2925 -3.6471 20 6 11.1533 1.5102 -4.6971 21 1 11.0314 2.3848 -5.3189 22 6 12.1734 0.6069 -4.9622 23 7 12.5317 -0.2685 -4.0470 24 14 13.0376 0.6336 -6.6181 25 1 14.2036 1.5508 -6.5532 26 1 13.5031 -0.7356 -6.9557 27 1 12.0932 1.1067 -7.6619 28 6 9.9866 -0.0743 -3.2098 29 6 8.4646 -0.2460 -3.1862 30 1 -0.3633 0.4164 0.9395 31 1 -0.3633 0.6054 -0.8304 32 1 -0.3633 -1.0219 -0.1091 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.8058 2.7517 1.2341 36 1 1.5408 1.3792 2.1229 37 1 2.9022 3.9330 1.0913 38 1 3.0665 3.1538 2.7004 39 1 5.1898 0.3324 1.6727 40 1 4.8754 1.4863 2.9910 41 1 3.5634 0.4463 2.3867 42 1 5.9353 0.2051 -2.9836 43 1 8.2546 0.7895 -1.3087 44 1 7.7796 2.2747 -3.9329 45 1 7.7061 3.0011 -2.3089 46 1 10.0634 2.4591 -1.9143 47 1 9.9275 3.3520 -3.4495 48 1 13.2442 -0.8999 -4.2323 49 1 10.3886 -0.2400 -2.2103 50 1 10.4243 -0.7905 -3.9053 51 1 8.2149 -1.2229 -2.7723 52 1 8.0741 -0.1697 -4.2010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322825774.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:02 Heat of formation + Delta-G solvation = -73.131190 kcal Electronic energy + Delta-G solvation = -30619.197714 eV Core-core repulsion = 26618.094390 eV Total energy + Delta-G solvation = -4001.103324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.10419 -40.53872 -39.05514 -38.78038 -36.16016 -34.81531 -33.96497 -32.76577 -31.87097 -31.27578 -30.73146 -27.71044 -26.96115 -25.79060 -24.13342 -23.89974 -23.43648 -22.39232 -21.53403 -21.21414 -20.43275 -18.95514 -18.38832 -18.14029 -17.20619 -16.92300 -16.78873 -16.29470 -15.82426 -15.56986 -15.42230 -15.37619 -15.09196 -15.01836 -14.75840 -14.54408 -14.23153 -14.14534 -13.86069 -13.74985 -13.29945 -13.24674 -13.21205 -13.03972 -12.96543 -12.66988 -12.58018 -12.47722 -12.41647 -12.23679 -12.10001 -12.05852 -11.90751 -11.77137 -11.60563 -11.49112 -11.38039 -11.28676 -10.57551 -10.49861 -10.21553 -9.84495 -8.69745 -7.89505 -5.36516 0.31716 1.21042 1.47370 1.48917 1.58644 2.09589 2.41220 2.50921 3.21874 3.28553 3.54179 3.64290 3.68631 3.81810 3.86342 3.96958 4.11090 4.19951 4.25013 4.26326 4.41650 4.44260 4.47937 4.55871 4.61479 4.67654 4.71190 4.75087 4.80478 4.93590 4.95512 4.97178 4.99687 5.05572 5.09588 5.10832 5.15721 5.19436 5.21393 5.26912 5.29517 5.33330 5.42629 5.44036 5.47924 5.63474 5.67030 6.04723 6.25129 6.38795 6.65525 6.92522 7.13496 7.82287 8.35876 9.17777 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027144 B = 0.002302 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.297155 B =12158.168061 C =12559.680298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.128 3.872 4 H 0.074 0.926 5 C -0.116 4.116 6 C -0.123 4.123 7 C 0.107 3.893 8 H 0.094 0.906 9 C -0.147 4.147 10 N -0.580 5.580 11 C 0.519 3.481 12 O -0.544 6.544 13 C 0.504 3.496 14 O -0.531 6.531 15 N -0.685 5.685 16 C 0.162 3.838 17 C -0.125 4.125 18 C 0.146 3.854 19 N -0.609 5.609 20 C -0.265 4.265 21 H 0.066 0.934 22 C -0.047 4.047 23 N -0.934 5.934 24 Si 0.967 3.033 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.270 1.270 28 C 0.182 3.818 29 C -0.132 4.132 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.032 0.968 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.415 0.585 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.014 0.986 47 H 0.059 0.941 48 H 0.251 0.749 49 H 0.001 0.999 50 H 0.060 0.940 51 H 0.076 0.924 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.889 3.730 13.241 29.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.026 3.974 4 H 0.092 0.908 5 C -0.154 4.154 6 C -0.161 4.161 7 C 0.005 3.995 8 H 0.112 0.888 9 C -0.205 4.205 10 N -0.313 5.313 11 C 0.302 3.698 12 O -0.423 6.423 13 C 0.285 3.715 14 O -0.409 6.409 15 N -0.337 5.337 16 C 0.058 3.942 17 C -0.165 4.165 18 C 0.020 3.980 19 N -0.333 5.333 20 C -0.395 4.395 21 H 0.084 0.916 22 C -0.243 4.243 23 N -0.579 5.579 24 Si 0.795 3.205 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.195 1.195 28 C 0.056 3.944 29 C -0.171 4.171 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.051 0.949 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.252 0.748 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.032 0.968 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.019 0.981 50 H 0.078 0.922 51 H 0.095 0.905 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.610 3.706 13.328 29.107 hybrid contribution 1.019 -0.568 -1.342 1.778 sum -24.591 3.138 11.986 27.536 Atomic orbital electron populations 1.21679 0.93135 1.02267 1.02835 1.21884 0.97832 0.95581 1.01940 1.22035 0.77833 0.97357 1.00157 0.90809 1.22766 0.98884 0.99396 0.94341 1.22909 0.92582 0.97418 1.03189 1.22521 0.98424 0.94768 0.83767 0.88813 1.21994 1.01250 0.98477 0.98787 1.48616 1.08254 1.56585 1.17795 1.19784 0.87641 0.80010 0.82373 1.90722 1.71464 1.41845 1.38241 1.20243 0.88246 0.80068 0.82925 1.90687 1.71380 1.41321 1.37477 1.45994 1.08380 1.56292 1.23045 1.20863 0.77633 0.95837 0.99817 1.22202 0.97382 0.96230 1.00683 1.20958 0.91116 0.91184 0.94704 1.44325 1.51899 1.01032 1.36024 1.19469 1.06406 1.09171 1.04476 0.91627 1.25851 0.97402 0.99973 1.01093 1.70168 1.30932 1.23239 1.33602 0.85286 0.78395 0.76590 0.80203 1.21157 1.21792 1.19522 1.20513 0.90190 0.86955 0.96773 1.22300 0.97726 0.97528 0.99589 0.90581 0.92636 0.92413 0.93364 0.91610 0.87682 0.88930 0.90243 0.87326 0.94922 0.89730 0.91362 0.74843 0.90902 0.91849 0.91541 0.96826 0.92224 0.93972 0.98116 0.92156 0.90528 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.67 71.98 0.70 -0.90 16 2 C -0.13 -2.21 5.40 30.60 0.17 -2.04 16 3 C 0.13 2.07 2.92 45.34 0.13 2.20 16 4 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 5 C -0.12 -1.02 5.34 31.78 0.17 -0.85 16 6 C -0.12 -1.29 6.58 32.06 0.21 -1.08 16 7 C 0.11 1.96 2.74 45.54 0.12 2.09 16 8 H 0.09 2.18 5.86 -2.38 -0.01 2.17 16 9 C -0.15 -2.50 9.41 71.98 0.68 -1.82 16 10 N -0.58 -12.60 2.71 -765.73 -2.08 -14.68 16 11 C 0.52 14.41 7.73 87.27 0.67 15.08 16 12 O -0.54 -16.92 15.26 -3.23 -0.05 -16.97 16 13 C 0.50 15.14 7.82 87.27 0.68 15.82 16 14 O -0.53 -17.34 13.06 -3.26 -0.04 -17.38 16 15 N -0.69 -20.35 5.07 -443.75 -2.25 -22.60 16 16 C 0.16 5.54 2.42 45.02 0.11 5.65 16 17 C -0.12 -4.43 5.65 30.67 0.17 -4.25 16 18 C 0.15 6.23 6.52 86.36 0.56 6.79 16 19 N -0.61 -30.65 2.98 -699.10 -2.09 -32.74 16 20 C -0.27 -14.56 9.56 84.03 0.80 -13.76 16 21 H 0.07 3.52 7.88 -2.91 -0.02 3.49 16 22 C -0.05 -2.64 4.91 84.86 0.42 -2.23 16 23 N -0.93 -55.02 11.30 21.65 0.24 -54.77 16 24 Si 0.97 44.68 29.58 68.60 2.03 46.71 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 28 C 0.18 8.68 5.28 86.36 0.46 9.13 16 29 C -0.13 -4.81 5.55 30.67 0.17 -4.64 16 30 H 0.08 0.55 7.68 -2.39 -0.02 0.53 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 1.11 6.55 -2.39 -0.02 1.10 16 34 H 0.07 1.04 8.02 -2.39 -0.02 1.02 16 35 H 0.10 0.52 8.14 -2.38 -0.02 0.51 16 36 H 0.09 0.63 7.32 -2.39 -0.02 0.61 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 0.71 8.05 -2.39 -0.02 0.69 16 39 H 0.03 0.73 7.92 -2.39 -0.02 0.71 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 0.95 7.37 -2.39 -0.02 0.93 16 42 H 0.41 11.32 8.07 -92.71 -0.75 10.57 16 43 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 44 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 45 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 48 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 49 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 50 H 0.06 3.22 6.19 -2.38 -0.01 3.21 16 51 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 52 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -67.08 401.24 2.15 -64.93 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.15 Total: 22.30 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 6.23 Total: 25.19 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -6.17 Total: -124.78 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.09 Total: -34.35 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -67.08 2.15 -64.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322825774.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.198 kcal (2) G-P(sol) polarization free energy of solvation -67.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds