Wall clock time and date at job start Tue Mar 31 2020 20:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46736 * 2 1 4 4 H 1.08997 * 109.52581 * 305.07099 * 3 2 1 5 5 C 1.53186 * 109.49920 * 65.16358 * 3 2 1 6 6 N 1.46927 * 108.77924 * 65.31315 * 5 3 2 7 7 C 1.34778 * 120.63064 * 233.63500 * 6 5 3 8 8 O 1.21285 * 120.00009 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.00039 * 179.97438 * 7 6 5 10 10 C 1.53775 * 113.61062 * 279.13062 * 9 7 6 11 11 C 1.53953 * 87.02108 * 220.04889 * 10 9 7 12 12 C 1.53778 * 113.61347 * 181.52281 * 9 7 6 13 13 C 1.46919 * 118.73744 * 53.60628 * 6 5 3 14 14 C 1.53188 * 108.78036 * 306.39154 * 13 6 5 15 15 C 1.53042 * 109.49266 * 184.99876 * 3 2 1 16 16 H 1.08993 * 109.45915 * 181.40745 * 15 3 2 17 17 N 1.46901 * 109.46090 * 61.43207 * 15 3 2 18 18 C 1.46905 * 110.99870 * 154.99885 * 17 15 3 19 19 C 1.50697 * 109.47066 * 180.02562 * 18 17 15 20 20 O 1.21297 * 120.00124 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00196 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00290 * 180.02562 * 21 19 18 23 23 H 1.07990 * 119.99768 * 359.97438 * 22 21 19 24 24 C 1.38956 * 119.99812 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99431 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 120.00201 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47527 * 89.99837 * 26 24 22 28 28 H 1.48505 * 109.46906 * 209.99968 * 26 24 22 29 29 H 1.48499 * 109.47065 * 329.99736 * 26 24 22 30 30 H 1.08999 * 109.47278 * 300.00254 * 1 2 3 31 31 H 1.09009 * 109.47051 * 60.00324 * 1 2 3 32 32 H 1.09006 * 109.47235 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47278 * 239.99746 * 2 1 3 34 34 H 1.08997 * 109.46908 * 120.00056 * 2 1 3 35 35 H 1.09003 * 109.58739 * 185.10248 * 5 3 2 36 36 H 1.09004 * 109.58591 * 305.52615 * 5 3 2 37 37 H 1.09002 * 112.84617 * 50.33047 * 9 7 6 38 38 H 1.08995 * 113.62127 * 334.57077 * 10 9 7 39 39 H 1.09010 * 113.61123 * 105.47062 * 10 9 7 40 40 H 1.09009 * 113.53787 * 270.81566 * 11 10 9 41 41 H 1.08996 * 113.74661 * 139.94617 * 11 10 9 42 42 H 1.08995 * 113.62198 * 254.53038 * 12 9 7 43 43 H 1.09003 * 113.61194 * 25.35164 * 12 9 7 44 44 H 1.08999 * 109.58906 * 66.18527 * 13 6 5 45 45 H 1.09005 * 109.58994 * 186.46335 * 13 6 5 46 46 H 1.08998 * 109.50077 * 294.68769 * 14 13 6 47 47 H 1.08998 * 109.50084 * 174.58347 * 14 13 6 48 48 H 1.00901 * 111.00067 * 278.95061 * 17 15 3 49 49 H 1.09001 * 109.46798 * 300.00327 * 18 17 15 50 50 H 1.08998 * 109.46961 * 60.00043 * 18 17 15 51 51 H 0.97009 * 119.99629 * 359.97438 * 21 19 18 52 52 H 0.97004 * 119.99652 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6048 1.9827 -0.8408 5 6 1.6385 2.1268 1.3104 6 7 2.3367 1.4666 2.4219 7 6 1.6491 0.9909 3.4791 8 8 0.4424 1.1064 3.5193 9 6 2.3796 0.3157 4.6111 10 6 2.7337 -1.1534 4.3263 11 6 2.3550 -1.4447 5.7898 12 6 1.4505 -0.2029 5.7214 13 6 3.7985 1.3341 2.3588 14 6 4.1759 0.6587 1.0367 15 6 3.5652 1.4450 -0.1257 16 1 3.9299 2.4718 -0.1005 17 7 3.9525 0.8191 -1.3970 18 6 5.2670 1.3010 -1.8421 19 6 5.6294 0.6389 -3.1464 20 8 4.8675 -0.1559 -3.6554 21 7 6.8002 0.9298 -3.7473 22 6 7.1297 0.3278 -4.9342 23 1 6.4514 -0.3798 -5.3874 24 6 8.3370 0.6274 -5.5534 25 7 8.6531 0.0500 -6.6908 26 14 9.5113 1.8498 -4.7685 27 1 10.4405 1.1306 -3.8604 28 1 10.2899 2.5390 -5.8287 29 1 8.7372 2.8515 -3.9924 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.9211 3.1789 1.2748 36 1 0.5612 2.0403 1.4527 37 1 3.2190 0.9031 4.9832 38 1 2.0732 -1.6292 3.6014 39 1 3.7895 -1.3135 4.1073 40 1 3.1887 -1.3399 6.4843 41 1 1.8070 -2.3772 5.9241 42 1 1.4716 0.4032 6.6270 43 1 0.4380 -0.4169 5.3789 44 1 4.2574 2.3216 2.4087 45 1 4.1469 0.7268 3.1942 46 1 3.7924 -0.3616 1.0269 47 1 5.2608 0.6411 0.9337 48 1 3.9425 -0.1871 -1.3225 49 1 5.2297 2.3814 -1.9815 50 1 6.0171 1.0574 -1.0897 51 1 7.4093 1.5657 -3.3404 52 1 9.4961 0.2589 -7.1230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323127528.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:50 Heat of formation + Delta-G solvation = -52.423431 kcal Electronic energy + Delta-G solvation = -30443.209354 eV Core-core repulsion = 26443.003986 eV Total energy + Delta-G solvation = -4000.205369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.07298 -39.31602 -38.31679 -37.37290 -35.19441 -34.17102 -33.82945 -31.70076 -31.05238 -29.82019 -27.69276 -26.50711 -26.01578 -24.62435 -23.98157 -23.28743 -22.41785 -20.94370 -19.51481 -19.43106 -18.63312 -18.24359 -17.78361 -16.37988 -16.10932 -15.85319 -15.70374 -15.36997 -15.08975 -14.75483 -14.68780 -14.33793 -14.26295 -13.91525 -13.44612 -13.31193 -13.05313 -12.95623 -12.84581 -12.64855 -12.53525 -12.33662 -12.29606 -12.07476 -11.95502 -11.78457 -11.65678 -11.46215 -11.39695 -11.18831 -10.93375 -10.79831 -10.72275 -10.62026 -10.56945 -10.31344 -9.99338 -9.81505 -9.59254 -8.87587 -8.60363 -8.21184 -8.12721 -6.32880 -3.84355 2.38491 2.74049 3.00299 3.04032 3.12926 3.72078 4.02034 4.08459 4.08958 4.17165 4.23208 4.41289 4.42449 4.56908 4.71814 4.73462 4.83032 4.86339 4.96413 5.10501 5.13579 5.18521 5.23426 5.27028 5.36618 5.40276 5.43190 5.46540 5.48547 5.50234 5.54958 5.58540 5.60623 5.70780 5.74140 5.76874 5.83278 5.88477 5.92410 6.02367 6.08055 6.14486 6.21711 6.37781 6.42994 7.09620 7.16368 7.54594 7.56862 7.96435 8.12871 8.57894 8.93310 9.40587 9.80907 10.80276 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018962 B = 0.002356 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.291572 B =11880.912540 C =12456.338280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.088 4.088 4 H 0.091 0.909 5 C 0.111 3.889 6 N -0.606 5.606 7 C 0.525 3.475 8 O -0.542 6.542 9 C -0.139 4.139 10 C -0.123 4.123 11 C -0.142 4.142 12 C -0.118 4.118 13 C 0.112 3.888 14 C -0.170 4.170 15 C 0.093 3.907 16 H 0.078 0.922 17 N -0.660 5.660 18 C 0.048 3.952 19 C 0.449 3.551 20 O -0.564 6.564 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.119 0.881 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.269 1.269 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.351 0.649 49 H 0.086 0.914 50 H 0.044 0.956 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.172 3.497 26.025 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.108 4.108 4 H 0.109 0.891 5 C -0.012 4.012 6 N -0.339 5.339 7 C 0.314 3.686 8 O -0.419 6.419 9 C -0.161 4.161 10 C -0.161 4.161 11 C -0.180 4.180 12 C -0.155 4.155 13 C -0.011 4.011 14 C -0.210 4.210 15 C -0.017 4.017 16 H 0.096 0.904 17 N -0.291 5.291 18 C -0.085 4.085 19 C 0.235 3.765 20 O -0.446 6.446 21 N -0.231 5.231 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.707 3.293 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.113 0.887 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.172 0.828 49 H 0.104 0.896 50 H 0.061 0.939 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.524 3.433 25.091 27.425 hybrid contribution 1.985 0.626 0.939 2.283 sum -8.540 4.059 26.030 27.694 Atomic orbital electron populations 1.21821 0.96065 1.01419 1.01757 1.21503 0.95730 0.96012 1.01989 1.21524 0.94897 0.97479 0.96853 0.89089 1.21788 0.99004 0.95403 0.84971 1.48085 1.07438 1.58265 1.20080 1.20507 0.87572 0.77643 0.82923 1.90671 1.14273 1.57609 1.79329 1.22800 1.00443 0.97041 0.95774 1.22875 1.02089 0.93229 0.97887 1.22863 0.99896 0.98744 0.96449 1.22796 0.98959 0.96589 0.97198 1.21685 0.79891 1.01071 0.98487 1.22761 1.01529 1.01177 0.95566 1.21577 0.94859 0.98225 0.87075 0.90398 1.60180 1.28091 1.12807 1.28027 1.21744 0.90455 1.00509 0.95801 1.19726 0.83009 0.86460 0.87297 1.90572 1.50325 1.37332 1.66361 1.42216 1.17658 1.40692 1.22493 1.19429 1.04272 1.23044 0.96600 0.86303 1.25049 0.97280 0.97892 0.96006 1.69625 1.23823 1.42491 1.16180 0.86664 0.81643 0.81366 0.79657 1.19689 1.20174 1.19493 0.92453 0.92739 0.93237 0.90842 0.92614 0.91676 0.88465 0.87146 0.89608 0.90634 0.89913 0.90925 0.91131 0.88741 0.91279 0.89709 0.90611 0.90642 0.82817 0.89551 0.93853 0.79731 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.68 37.16 0.36 -1.32 16 2 C -0.11 -1.27 4.67 -26.73 -0.12 -1.39 16 3 C -0.09 -0.90 2.38 -90.50 -0.22 -1.12 16 4 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 5 C 0.11 1.06 5.70 -3.71 -0.02 1.04 16 6 N -0.61 -5.42 2.33 -172.77 -0.40 -5.82 16 7 C 0.53 5.40 7.22 -10.98 -0.08 5.32 16 8 O -0.54 -7.47 15.32 5.55 0.09 -7.39 16 9 C -0.14 -1.03 2.72 -90.96 -0.25 -1.27 16 10 C -0.12 -0.81 7.16 -25.83 -0.18 -0.99 16 11 C -0.14 -0.83 8.09 -25.83 -0.21 -1.04 16 12 C -0.12 -0.87 7.40 -25.92 -0.19 -1.06 16 13 C 0.11 0.78 6.31 -3.72 -0.02 0.76 16 14 C -0.17 -1.43 4.99 -26.61 -0.13 -1.57 16 15 C 0.09 0.97 2.13 -67.66 -0.14 0.82 16 16 H 0.08 0.77 7.80 -51.93 -0.40 0.37 16 17 N -0.66 -9.36 5.42 -107.94 -0.59 -9.94 16 18 C 0.05 0.74 5.96 -4.97 -0.03 0.71 16 19 C 0.45 9.91 7.82 -10.99 -0.09 9.82 16 20 O -0.56 -14.89 15.78 5.54 0.09 -14.80 16 21 N -0.59 -13.79 5.09 -10.96 -0.06 -13.85 16 22 C -0.30 -8.53 10.16 -14.93 -0.15 -8.69 16 23 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 24 C 0.04 1.10 5.50 -17.46 -0.10 1.01 16 25 N -0.88 -25.59 13.96 55.50 0.77 -24.81 16 26 Si 0.88 19.07 27.74 -169.99 -4.72 14.36 16 27 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 28 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 29 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 30 H 0.06 0.66 6.46 -51.93 -0.34 0.33 16 31 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.93 7.00 -51.93 -0.36 0.57 16 34 H 0.06 0.61 6.13 -51.93 -0.32 0.30 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 1.07 5.21 -51.93 -0.27 0.80 16 37 H 0.11 0.62 7.55 -51.93 -0.39 0.23 16 38 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.07 0.41 7.89 -51.92 -0.41 0.00 16 40 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.87 7.45 -51.93 -0.39 0.48 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.47 5.36 -51.93 -0.28 0.19 16 46 H 0.08 0.69 6.45 -51.93 -0.33 0.36 16 47 H 0.08 0.62 7.42 -51.93 -0.39 0.23 16 48 H 0.35 5.31 7.33 -39.29 -0.29 5.03 16 49 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 50 H 0.04 0.57 7.41 -51.93 -0.38 0.18 16 51 H 0.37 7.53 5.76 -40.82 -0.24 7.30 16 52 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 396.45 15.07 5.97 5.97 Total: -1.00 -33.34 396.45 -8.98 -42.32 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -8.56 Total: 12.93 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.58 Total: 1.03 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.27 Total: -54.43 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.17 Total: -22.19 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.72 Total: 14.36 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.34 -8.98 -42.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323127528.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.103 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds