Wall clock time and date at job start Tue Mar 31 2020 20:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46736 * 2 1 4 4 H 1.08997 * 109.52581 * 305.07099 * 3 2 1 5 5 C 1.53186 * 109.49920 * 65.16358 * 3 2 1 6 6 N 1.46927 * 108.77924 * 65.31315 * 5 3 2 7 7 C 1.34778 * 120.63064 * 233.63500 * 6 5 3 8 8 O 1.21285 * 120.00009 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.00039 * 179.97438 * 7 6 5 10 10 C 1.53775 * 113.61062 * 279.13062 * 9 7 6 11 11 C 1.53953 * 87.02108 * 220.04889 * 10 9 7 12 12 C 1.53778 * 113.61347 * 181.52281 * 9 7 6 13 13 C 1.46919 * 118.73744 * 53.60628 * 6 5 3 14 14 C 1.53188 * 108.78036 * 306.39154 * 13 6 5 15 15 C 1.53042 * 109.49266 * 184.99876 * 3 2 1 16 16 H 1.08993 * 109.45915 * 181.40745 * 15 3 2 17 17 N 1.46901 * 109.46090 * 61.43207 * 15 3 2 18 18 C 1.46905 * 110.99870 * 154.99885 * 17 15 3 19 19 C 1.50697 * 109.47066 * 180.02562 * 18 17 15 20 20 O 1.21297 * 120.00124 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00196 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00290 * 180.02562 * 21 19 18 23 23 H 1.07990 * 119.99768 * 359.97438 * 22 21 19 24 24 C 1.38956 * 119.99812 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99431 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 120.00201 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47527 * 89.99837 * 26 24 22 28 28 H 1.48505 * 109.46906 * 209.99968 * 26 24 22 29 29 H 1.48499 * 109.47065 * 329.99736 * 26 24 22 30 30 H 1.08999 * 109.47278 * 300.00254 * 1 2 3 31 31 H 1.09009 * 109.47051 * 60.00324 * 1 2 3 32 32 H 1.09006 * 109.47235 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47278 * 239.99746 * 2 1 3 34 34 H 1.08997 * 109.46908 * 120.00056 * 2 1 3 35 35 H 1.09003 * 109.58739 * 185.10248 * 5 3 2 36 36 H 1.09004 * 109.58591 * 305.52615 * 5 3 2 37 37 H 1.09002 * 112.84617 * 50.33047 * 9 7 6 38 38 H 1.08995 * 113.62127 * 334.57077 * 10 9 7 39 39 H 1.09010 * 113.61123 * 105.47062 * 10 9 7 40 40 H 1.09009 * 113.53787 * 270.81566 * 11 10 9 41 41 H 1.08996 * 113.74661 * 139.94617 * 11 10 9 42 42 H 1.08995 * 113.62198 * 254.53038 * 12 9 7 43 43 H 1.09003 * 113.61194 * 25.35164 * 12 9 7 44 44 H 1.08999 * 109.58906 * 66.18527 * 13 6 5 45 45 H 1.09005 * 109.58994 * 186.46335 * 13 6 5 46 46 H 1.08998 * 109.50077 * 294.68769 * 14 13 6 47 47 H 1.08998 * 109.50084 * 174.58347 * 14 13 6 48 48 H 1.00901 * 111.00067 * 278.95061 * 17 15 3 49 49 H 1.09001 * 109.46798 * 300.00327 * 18 17 15 50 50 H 1.08998 * 109.46961 * 60.00043 * 18 17 15 51 51 H 0.97009 * 119.99629 * 359.97438 * 21 19 18 52 52 H 0.97004 * 119.99652 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6048 1.9827 -0.8408 5 6 1.6385 2.1268 1.3104 6 7 2.3367 1.4666 2.4219 7 6 1.6491 0.9909 3.4791 8 8 0.4424 1.1064 3.5193 9 6 2.3796 0.3157 4.6111 10 6 2.7337 -1.1534 4.3263 11 6 2.3550 -1.4447 5.7898 12 6 1.4505 -0.2029 5.7214 13 6 3.7985 1.3341 2.3588 14 6 4.1759 0.6587 1.0367 15 6 3.5652 1.4450 -0.1257 16 1 3.9299 2.4718 -0.1005 17 7 3.9525 0.8191 -1.3970 18 6 5.2670 1.3010 -1.8421 19 6 5.6294 0.6389 -3.1464 20 8 4.8675 -0.1559 -3.6554 21 7 6.8002 0.9298 -3.7473 22 6 7.1297 0.3278 -4.9342 23 1 6.4514 -0.3798 -5.3874 24 6 8.3370 0.6274 -5.5534 25 7 8.6531 0.0500 -6.6908 26 14 9.5113 1.8498 -4.7685 27 1 10.4405 1.1306 -3.8604 28 1 10.2899 2.5390 -5.8287 29 1 8.7372 2.8515 -3.9924 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.9211 3.1789 1.2748 36 1 0.5612 2.0403 1.4527 37 1 3.2190 0.9031 4.9832 38 1 2.0732 -1.6292 3.6014 39 1 3.7895 -1.3135 4.1073 40 1 3.1887 -1.3399 6.4843 41 1 1.8070 -2.3772 5.9241 42 1 1.4716 0.4032 6.6270 43 1 0.4380 -0.4169 5.3789 44 1 4.2574 2.3216 2.4087 45 1 4.1469 0.7268 3.1942 46 1 3.7924 -0.3616 1.0269 47 1 5.2608 0.6411 0.9337 48 1 3.9425 -0.1871 -1.3225 49 1 5.2297 2.3814 -1.9815 50 1 6.0171 1.0574 -1.0897 51 1 7.4093 1.5657 -3.3404 52 1 9.4961 0.2589 -7.1230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323127528.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:49 Heat of formation + Delta-G solvation = -75.827137 kcal Electronic energy + Delta-G solvation = -30444.224215 eV Core-core repulsion = 26443.003986 eV Total energy + Delta-G solvation = -4001.220229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.80080 -40.41176 -39.70602 -38.13466 -36.32657 -35.77629 -34.94274 -33.72890 -31.96802 -30.65381 -28.74377 -27.58733 -26.54965 -25.95245 -24.88421 -24.30966 -23.28088 -21.60418 -21.27926 -20.32569 -20.11942 -19.23038 -18.54394 -17.66926 -17.05498 -16.96245 -16.65186 -16.34736 -16.32528 -16.00802 -15.57751 -15.41335 -15.14870 -15.03243 -14.92180 -14.44200 -14.26786 -14.01585 -13.77693 -13.59888 -13.57241 -13.30237 -13.24903 -13.12163 -12.92062 -12.83799 -12.68061 -12.44651 -12.39996 -12.23857 -12.01677 -11.97053 -11.59513 -11.50157 -11.49215 -11.42039 -11.29186 -11.15977 -10.57944 -10.39814 -10.23303 -9.61766 -9.20119 -8.39859 -6.00851 1.31552 1.37208 1.46411 1.63962 1.98909 2.05978 2.24755 2.75109 3.16969 3.41857 3.48994 3.60674 3.67606 3.77397 3.86776 3.92684 4.00561 4.08511 4.12489 4.15254 4.23456 4.37352 4.46043 4.50067 4.57407 4.59234 4.65130 4.69978 4.72140 4.75026 4.78509 4.82158 4.87279 4.95137 4.99239 5.04087 5.06948 5.10065 5.19283 5.21322 5.28654 5.37080 5.43400 5.50863 5.54808 5.65325 5.93871 6.13396 6.41797 6.47273 6.61820 6.90312 7.22374 7.42171 7.99668 8.77950 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018962 B = 0.002356 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.291572 B =11880.912540 C =12456.338280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.082 4.082 4 H 0.079 0.921 5 C 0.115 3.885 6 N -0.603 5.603 7 C 0.518 3.482 8 O -0.587 6.587 9 C -0.135 4.135 10 C -0.121 4.121 11 C -0.132 4.132 12 C -0.126 4.126 13 C 0.112 3.888 14 C -0.164 4.164 15 C 0.097 3.903 16 H 0.095 0.905 17 N -0.679 5.679 18 C 0.064 3.936 19 C 0.447 3.553 20 O -0.616 6.616 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.053 0.947 24 C -0.018 4.018 25 N -0.936 5.936 26 Si 0.967 3.033 27 H -0.255 1.255 28 H -0.278 1.278 29 H -0.229 1.229 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.139 0.861 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.089 0.911 48 H 0.343 0.657 49 H 0.113 0.887 50 H 0.082 0.918 51 H 0.390 0.610 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.539 6.003 29.597 30.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.102 4.102 4 H 0.097 0.903 5 C -0.008 4.008 6 N -0.334 5.334 7 C 0.308 3.692 8 O -0.467 6.467 9 C -0.155 4.155 10 C -0.159 4.159 11 C -0.170 4.170 12 C -0.163 4.163 13 C -0.010 4.010 14 C -0.204 4.204 15 C -0.013 4.013 16 H 0.113 0.887 17 N -0.311 5.311 18 C -0.069 4.069 19 C 0.236 3.764 20 O -0.501 6.501 21 N -0.233 5.233 22 C -0.457 4.457 23 H 0.071 0.929 24 C -0.216 4.216 25 N -0.577 5.577 26 Si 0.787 3.213 27 H -0.180 1.180 28 H -0.203 1.203 29 H -0.152 1.152 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.156 0.844 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.124 0.876 46 H 0.083 0.917 47 H 0.108 0.892 48 H 0.162 0.838 49 H 0.131 0.869 50 H 0.100 0.900 51 H 0.226 0.774 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.887 5.954 28.691 30.345 hybrid contribution 1.007 -0.260 -0.241 1.067 sum -6.880 5.694 28.450 29.819 Atomic orbital electron populations 1.21767 0.96274 1.01206 1.01342 1.21412 0.95484 0.96706 1.00969 1.21439 0.95290 0.96501 0.96952 0.90275 1.21673 0.98167 0.96236 0.84729 1.48170 1.08461 1.57459 1.19358 1.21095 0.87230 0.77177 0.83728 1.90654 1.16348 1.59369 1.80340 1.22914 1.00782 0.97389 0.94464 1.22851 1.02731 0.92400 0.97913 1.22863 0.99960 0.97805 0.96340 1.22786 0.97993 0.97920 0.97648 1.21884 0.78282 1.02535 0.98326 1.22683 1.02083 1.00307 0.95330 1.21625 0.94462 0.99044 0.86157 0.88695 1.60142 1.27721 1.12482 1.30714 1.21665 0.91972 1.00918 0.92300 1.21102 0.81533 0.85019 0.88785 1.90555 1.51764 1.39518 1.68253 1.42036 1.18787 1.41219 1.21297 1.18990 1.04206 1.23547 0.98977 0.92927 1.26166 0.99063 1.00165 0.96252 1.69818 1.24891 1.44639 1.18370 0.85334 0.78448 0.78557 0.78970 1.17981 1.20301 1.15213 0.93082 0.92828 0.93385 0.92788 0.92529 0.90022 0.90390 0.84363 0.91650 0.88703 0.87818 0.91127 0.90221 0.91465 0.89165 0.87597 0.91722 0.89208 0.83791 0.86902 0.90046 0.77410 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.68 71.98 0.70 -2.71 16 2 C -0.11 -2.42 4.67 30.59 0.14 -2.27 16 3 C -0.08 -1.60 2.38 -10.72 -0.03 -1.62 16 4 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 5 C 0.11 2.04 5.70 86.36 0.49 2.54 16 6 N -0.60 -9.42 2.33 -818.91 -1.91 -11.32 16 7 C 0.52 10.00 7.22 87.66 0.63 10.63 16 8 O -0.59 -16.46 15.32 -3.05 -0.05 -16.50 16 9 C -0.13 -1.66 2.72 -11.02 -0.03 -1.68 16 10 C -0.12 -1.31 7.16 31.18 0.22 -1.09 16 11 C -0.13 -1.25 8.09 31.18 0.25 -0.99 16 12 C -0.13 -1.71 7.40 31.12 0.23 -1.48 16 13 C 0.11 1.08 6.31 86.36 0.54 1.63 16 14 C -0.16 -2.15 4.99 30.67 0.15 -2.00 16 15 C 0.10 1.72 2.13 44.95 0.10 1.81 16 16 H 0.09 1.43 7.80 -2.39 -0.02 1.41 16 17 N -0.68 -18.02 5.42 -495.42 -2.69 -20.70 16 18 C 0.06 1.74 5.96 85.55 0.51 2.25 16 19 C 0.45 19.45 7.82 87.66 0.69 20.13 16 20 O -0.62 -33.69 15.78 -3.08 -0.05 -33.74 16 21 N -0.59 -27.05 5.09 -306.99 -1.56 -28.61 16 22 C -0.33 -19.01 10.16 84.04 0.85 -18.15 16 23 H 0.05 3.66 7.39 -2.92 -0.02 3.64 16 24 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 25 N -0.94 -56.24 13.96 21.67 0.30 -55.94 16 26 Si 0.97 37.79 27.74 68.60 1.90 39.70 16 27 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 28 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 29 H -0.23 -7.39 6.52 99.48 0.65 -6.74 16 30 H 0.05 1.24 6.46 -2.39 -0.02 1.22 16 31 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.05 1.42 7.00 -2.39 -0.02 1.41 16 34 H 0.06 1.24 6.13 -2.39 -0.01 1.23 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.73 5.21 -2.39 -0.01 1.72 16 37 H 0.14 0.95 7.55 -2.39 -0.02 0.93 16 38 H 0.06 0.99 8.09 -2.39 -0.02 0.97 16 39 H 0.09 0.67 7.89 -2.38 -0.02 0.66 16 40 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 1.29 7.45 -2.39 -0.02 1.27 16 44 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.11 0.63 5.36 -2.38 -0.01 0.61 16 46 H 0.06 1.03 6.45 -2.39 -0.02 1.01 16 47 H 0.09 0.99 7.42 -2.39 -0.02 0.97 16 48 H 0.34 10.15 7.33 -89.69 -0.66 9.49 16 49 H 0.11 2.59 8.05 -2.39 -0.02 2.57 16 50 H 0.08 1.69 7.41 -2.39 -0.02 1.67 16 51 H 0.39 14.49 5.76 -92.70 -0.53 13.96 16 52 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -80.71 396.45 1.57 -79.15 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: -0.31 Total: 41.51 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 5.93 Total: 6.46 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -5.85 Total: -116.58 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -0.10 Total: -50.25 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 1.90 Total: 39.70 kcal Total: -80.71 1.57 -79.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323127528.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.320 kcal (2) G-P(sol) polarization free energy of solvation -80.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds