Wall clock time and date at job start Tue Mar 31 2020 20:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47143 * 2 1 4 4 H 1.08995 * 109.52540 * 304.56499 * 3 2 1 5 5 C 1.53200 * 109.48414 * 64.65020 * 3 2 1 6 6 N 1.46920 * 108.76532 * 174.59740 * 5 3 2 7 7 C 1.34777 * 120.63237 * 126.35653 * 6 5 3 8 8 O 1.21285 * 119.99644 * 0.02724 * 7 6 5 9 9 C 1.50698 * 120.00217 * 180.02562 * 7 6 5 10 10 C 1.53782 * 113.61644 * 279.14228 * 9 7 6 11 11 C 1.53955 * 87.01829 * 220.04711 * 10 9 7 12 12 C 1.53786 * 113.61283 * 181.53114 * 9 7 6 13 13 C 1.46932 * 118.74075 * 306.38734 * 6 5 3 14 14 C 1.53186 * 108.77531 * 53.60547 * 13 6 5 15 15 C 1.53041 * 109.49540 * 184.47556 * 3 2 1 16 16 H 1.08996 * 109.46505 * 298.69474 * 15 3 2 17 17 N 1.46900 * 109.45651 * 58.66881 * 15 3 2 18 18 C 1.46901 * 110.99877 * 204.75972 * 17 15 3 19 19 C 1.50696 * 109.47278 * 180.02562 * 18 17 15 20 20 O 1.21295 * 119.99884 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00344 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00375 * 179.72237 * 21 19 18 23 23 H 1.08000 * 119.99970 * 0.27746 * 22 21 19 24 24 C 1.38954 * 120.00141 * 180.27335 * 22 21 19 25 25 N 1.31407 * 119.99676 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00054 * 180.02562 * 24 22 21 27 27 H 1.48490 * 109.47067 * 89.99877 * 26 24 22 28 28 H 1.48504 * 109.47138 * 210.00450 * 26 24 22 29 29 H 1.48503 * 109.47084 * 330.00003 * 26 24 22 30 30 H 1.09005 * 109.46803 * 299.99626 * 1 2 3 31 31 H 1.08997 * 109.47595 * 59.99443 * 1 2 3 32 32 H 1.09000 * 109.47373 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46803 * 240.00373 * 2 1 3 34 34 H 1.08998 * 109.47226 * 120.00163 * 2 1 3 35 35 H 1.09001 * 109.59595 * 54.81222 * 5 3 2 36 36 H 1.08996 * 109.70016 * 294.45307 * 5 3 2 37 37 H 1.08998 * 112.84731 * 50.33995 * 9 7 6 38 38 H 1.09001 * 113.61216 * 334.56594 * 10 9 7 39 39 H 1.09000 * 113.61287 * 105.46910 * 10 9 7 40 40 H 1.08996 * 113.53715 * 270.81238 * 11 10 9 41 41 H 1.09006 * 113.74334 * 139.94330 * 11 10 9 42 42 H 1.08994 * 113.61436 * 254.53297 * 12 9 7 43 43 H 1.09000 * 113.61116 * 25.35200 * 12 9 7 44 44 H 1.09004 * 109.58343 * 293.81766 * 13 6 5 45 45 H 1.08992 * 109.58625 * 173.39600 * 13 6 5 46 46 H 1.09008 * 109.49688 * 185.41869 * 14 13 6 47 47 H 1.08998 * 109.50148 * 65.31659 * 14 13 6 48 48 H 1.00896 * 111.00319 * 328.71231 * 17 15 3 49 49 H 1.08999 * 109.47364 * 59.99869 * 18 17 15 50 50 H 1.09001 * 109.47223 * 300.00057 * 18 17 15 51 51 H 0.97002 * 119.99483 * 359.97438 * 21 19 18 52 52 H 0.97002 * 119.99976 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6120 1.9803 -0.8459 5 6 1.6274 2.1304 1.3052 6 7 2.2333 3.4682 1.3465 7 6 1.4719 4.5609 1.5532 8 8 0.2745 4.4452 1.7078 9 6 2.1083 5.9264 1.5923 10 6 2.7585 6.2645 2.9442 11 6 2.1956 7.6866 2.7681 12 6 1.1111 7.0628 1.8738 13 6 3.6851 3.5923 1.1574 14 6 4.0747 2.8878 -0.1458 15 6 3.5663 1.4446 -0.1126 16 1 3.9945 0.9284 0.7466 17 7 3.9668 0.7561 -1.3469 18 6 5.3293 0.2192 -1.2317 19 6 5.7046 -0.4779 -2.5139 20 8 4.9150 -0.5226 -3.4335 21 7 6.9177 -1.0517 -2.6390 22 6 7.2571 -1.6907 -3.8035 23 1 6.5539 -1.7305 -4.6223 24 6 8.5056 -2.2872 -3.9303 25 7 9.3609 -2.2391 -2.9338 26 14 8.9683 -3.1574 -5.5172 27 1 9.6116 -2.1904 -6.4425 28 1 9.9151 -4.2617 -5.2183 29 1 7.7457 -3.7118 -6.1522 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 1.9783 1.5440 2.1543 36 1 0.5418 2.2195 1.3463 37 1 2.7562 6.1160 0.7365 38 1 2.3239 5.7240 3.7851 39 1 3.8475 6.2199 2.9283 40 1 2.8684 8.3581 2.2347 41 1 1.8056 8.1214 3.6885 42 1 0.8722 7.6617 0.9950 43 1 0.2248 6.7406 2.4202 44 1 4.2038 3.1251 1.9946 45 1 3.9571 4.6461 1.0986 46 1 5.1598 2.8889 -0.2497 47 1 3.6273 3.4117 -0.9905 48 1 3.3101 0.0278 -1.5841 49 1 5.3714 -0.4910 -0.4059 50 1 6.0270 1.0355 -1.0447 51 1 7.5494 -1.0156 -1.9037 52 1 10.2324 -2.6558 -3.0222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323127530.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:53 Heat of formation + Delta-G solvation = -60.960498 kcal Electronic energy + Delta-G solvation = -29923.006616 eV Core-core repulsion = 25922.431052 eV Total energy + Delta-G solvation = -4000.575564 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.91660 -39.22479 -38.12156 -37.33169 -35.28823 -34.34677 -33.78485 -31.31885 -30.96593 -29.72131 -27.64890 -26.36564 -25.98068 -24.63833 -24.37448 -23.30799 -21.41981 -20.82297 -19.92219 -19.24833 -19.02335 -17.90590 -17.64822 -16.58820 -16.15179 -15.90137 -15.40030 -15.30020 -14.92591 -14.72450 -14.50615 -14.09845 -13.93111 -13.83533 -13.74681 -13.39212 -13.26156 -13.14074 -12.82971 -12.54508 -12.42412 -12.28601 -12.12525 -12.02078 -11.77026 -11.66915 -11.52966 -11.45028 -11.18686 -11.04116 -10.87635 -10.78483 -10.72724 -10.67954 -10.40731 -10.33629 -10.22495 -9.79604 -9.52316 -8.85082 -8.45411 -8.08001 -7.97293 -6.43236 -3.83946 2.40942 2.77125 3.16805 3.25473 3.31329 3.89326 4.04410 4.12687 4.20019 4.24702 4.29483 4.44418 4.47158 4.59069 4.66136 4.74980 4.93782 4.99047 5.12006 5.16261 5.17540 5.21222 5.23317 5.29493 5.37463 5.40086 5.42411 5.43593 5.50138 5.51697 5.59620 5.63015 5.73496 5.73754 5.77182 5.82762 5.88656 5.94941 6.01982 6.05464 6.09686 6.15300 6.21285 6.30398 6.37184 7.19378 7.23723 7.53890 7.67059 7.98736 8.05093 8.59881 9.16612 9.52899 10.04435 10.74509 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017923 B = 0.002191 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.846240 B =12773.603375 C =13853.991932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.102 4.102 4 H 0.085 0.915 5 C 0.118 3.882 6 N -0.609 5.609 7 C 0.525 3.475 8 O -0.545 6.545 9 C -0.140 4.140 10 C -0.123 4.123 11 C -0.142 4.142 12 C -0.118 4.118 13 C 0.108 3.892 14 C -0.125 4.125 15 C 0.093 3.907 16 H 0.043 0.957 17 N -0.666 5.666 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.351 0.649 49 H 0.042 0.958 50 H 0.085 0.915 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.470 14.843 15.100 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.121 4.121 4 H 0.103 0.897 5 C -0.005 4.005 6 N -0.341 5.341 7 C 0.314 3.686 8 O -0.422 6.422 9 C -0.161 4.161 10 C -0.161 4.161 11 C -0.179 4.179 12 C -0.156 4.156 13 C -0.016 4.016 14 C -0.164 4.164 15 C -0.017 4.017 16 H 0.061 0.939 17 N -0.301 5.301 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.174 0.826 49 H 0.060 0.940 50 H 0.103 0.897 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.244 15.216 14.244 24.173 hybrid contribution 0.891 -1.319 0.161 1.600 sum -11.354 13.897 14.405 23.012 Atomic orbital electron populations 1.21789 0.95360 1.01749 1.02023 1.21607 0.96467 0.95580 1.02579 1.21694 0.95307 0.96647 0.98478 0.89696 1.21698 1.00028 0.81909 0.96869 1.48145 1.08223 1.06651 1.71113 1.20538 0.86715 0.85909 0.75449 1.90667 1.14907 1.86564 1.50096 1.22811 1.00359 0.92375 1.00517 1.22872 1.00547 0.97118 0.95574 1.22864 0.98480 0.96114 1.00478 1.22803 0.97312 0.95187 1.00308 1.21839 0.79775 1.01801 0.98160 1.21962 1.01881 0.95578 0.96997 1.21486 0.93790 0.94823 0.91639 0.93863 1.60147 1.03079 1.34645 1.32201 1.21714 0.91630 0.98297 0.96541 1.19822 0.83758 0.84443 0.89391 1.90527 1.51029 1.63574 1.41586 1.41867 1.13303 1.48528 1.16372 1.19701 0.99813 1.29792 0.93533 0.87940 1.25262 0.95697 0.98074 0.98941 1.69609 1.07967 1.45238 1.31531 0.85857 0.78486 0.78758 0.81193 1.20381 1.20942 1.19431 0.92638 0.92466 0.92611 0.90837 0.91855 0.91669 0.88631 0.86796 0.89768 0.90559 0.89816 0.90993 0.91004 0.88806 0.91244 0.89469 0.90303 0.90562 0.82552 0.93966 0.89717 0.77489 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.67 37.16 0.36 -1.10 16 2 C -0.12 -1.29 5.25 -26.73 -0.14 -1.43 16 3 C -0.10 -1.11 2.03 -90.49 -0.18 -1.29 16 4 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 5 C 0.12 1.21 5.31 -3.71 -0.02 1.19 16 6 N -0.61 -6.08 2.97 -172.77 -0.51 -6.60 16 7 C 0.53 5.86 7.22 -10.99 -0.08 5.78 16 8 O -0.54 -7.99 15.32 5.55 0.09 -7.90 16 9 C -0.14 -1.12 2.73 -90.96 -0.25 -1.37 16 10 C -0.12 -0.79 7.38 -25.83 -0.19 -0.98 16 11 C -0.14 -0.84 8.09 -25.82 -0.21 -1.04 16 12 C -0.12 -0.93 7.40 -25.91 -0.19 -1.12 16 13 C 0.11 0.87 6.30 -3.71 -0.02 0.85 16 14 C -0.13 -1.30 5.59 -26.61 -0.15 -1.45 16 15 C 0.09 1.09 1.95 -67.67 -0.13 0.96 16 16 H 0.04 0.49 7.80 -51.93 -0.41 0.09 16 17 N -0.67 -10.38 5.93 -107.95 -0.64 -11.02 16 18 C 0.05 0.87 5.96 -4.98 -0.03 0.84 16 19 C 0.44 10.27 7.82 -10.99 -0.09 10.18 16 20 O -0.58 -15.75 15.78 5.54 0.09 -15.67 16 21 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 22 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 26 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 30 H 0.05 0.50 6.69 -51.93 -0.35 0.16 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.88 6.00 -51.93 -0.31 0.56 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.10 5.71 -51.93 -0.30 0.80 16 37 H 0.11 0.78 7.29 -51.93 -0.38 0.40 16 38 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.88 7.45 -51.93 -0.39 0.50 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.56 5.66 -51.93 -0.29 0.26 16 46 H 0.08 0.81 7.41 -51.92 -0.38 0.43 16 47 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.35 5.77 5.73 -39.29 -0.23 5.54 16 49 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 50 H 0.08 1.32 7.39 -51.93 -0.38 0.94 16 51 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 52 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 403.30 15.07 6.08 6.08 Total: -1.00 -32.54 403.30 -9.56 -42.10 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -8.74 Total: 12.84 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.56 Total: 2.07 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.49 Total: -55.46 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.17 Total: -23.57 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.54 -9.56 -42.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323127530.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.865 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds